Array 1 133138-134519 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBER01000022.1 Ligilactobacillus salivarius strain CCuG45735 CCuG45735_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 133138 36 100.0 44 .................................... TTTAGGATTGCTTGATTTCTCCAAGCTCCACCATCAGCTTCAAA 133218 36 100.0 40 .................................... ACCATACCTATTTGAGCTAAATTCATATCAACTTCATTAG 133294 36 100.0 34 .................................... ATATTCTAAGAATAGATCATTCATTTTATCTTCA 133364 36 100.0 38 .................................... TTTGGAACTATCTTTCTCATATTTGGCTACTGTTAAGA 133438 36 100.0 37 .................................... TTATGTGCTTGTTTCATTAAATTCTTTTTACTCATTT 133511 36 100.0 35 .................................... ATATCGTTCCTTAAGATAATCCTGTGTTTTAACAT 133582 36 100.0 40 .................................... CAATAACCCGCTGTTGTTAATGTAATCATTTTTCATCACC 133658 36 100.0 39 .................................... TTTTTCTTTTATTGTGAAATATAGGTCATCATATTTTTC 133733 36 100.0 37 .................................... ATTGATACTATGGTTCACTTGTCAACAGTTTACCAGG 133806 36 100.0 35 .................................... ACTAAATAACCTTTATTACTCGTATATTTTTATTT 133877 36 100.0 40 .................................... CTGAGTTAATTTTTGAACTAATTTTTTCTAAAACATCTCT 133953 36 100.0 42 .................................... TATATACATTTGACGGATCCATTTCTTCAGTTGAATTATTTG 134031 36 100.0 40 .................................... TCTTCGATAGTTATAACATAACCGTAGCCTTTTTCATTGA 134107 36 100.0 37 .................................... CAATCCCCACCTCCGAGGATTAGTTGCATAGAATTTA 134180 36 100.0 41 .................................... CTAAACCTCGCTTGCTTTCTCAGCTAACGAAAAAGGTATAG 134257 36 100.0 37 .................................... AGCTGCTTTGGATTGACTTAATCCAAGCTTTAATCTT 134330 36 100.0 41 .................................... TTACCACCAGAAAAAGCAACTAAGATATTATCAAATTCATT 134407 36 97.2 40 .....................G.............. CCTGCTGTTGTTAGTTCGATCATTTTTCTTCATCCTTTCG 134483 35 88.9 0 ............................-....TCT | TT [134513] ========== ====== ====== ====== ==================================== ============================================ ================== 19 36 99.3 39 AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Left flank : CAGGATTGAAATTACTGACTTTCATTGAGGAAGGAAGATAAGTATGATGCTATTAGTATGTTTTGATTTACCAAGAGACACGAAAGAGAATAGAAAAGAAGCAACTAAATATCATAAGAAATTAGTAGAATTAGGTTTCACAATGAAGCAATTTAGTGTGTATGAAAGAGAAGTAAGACAAAATTCTACTAGAGATAGAGTAATTAAAGTGTTAAAAGATAGATTACCTAAATCAGGTGCAATTACTTTATATTTACTTCCTAACGAAGTAAATGATTCACAAATAACGATTTTAGGAAGTGAGTCTATAAAGAAAACTGTTAGGAAACCTCAATTTATTGTGTTATAATACACTTACACTGCTGTAAGAAACAGTAGTACAAATAAAAACTTGTCTGAATTTTGACCAAATAATACTTATTAATTTAACCTATTGCCCGTTTAGGGTACCATTAAAAATGTCAATAATTGTTGATATATCAACTAATTGATCAAAGAGT # Right flank : TAATTAAAGTGATAAGAAGGAGAGTAAAAGTTAGAAAAAATAATATATAATATAGGTAATTAATTAGAAAGTGGTGTAATTATGACAACATTAATATCATGTATTGGTGATACAGATCCTATAAGAAATAGGCATGATGGAGCTTTATTGCATTTAGCAAGAGTATTTCGCCCTGAAAAAATATTATTAATATACTCTGAGCGTGCTTTACTAAAAGAGAATAATATCTTATTAGCGTTAAATTCTATAGAAGGATATAATCCTGTAATAAAAAAAGATGAGAGATTTATTTCCAATAGTGAAGTATTTATTTTCGATAAAATGTATGAAATATTAAATAATATAGTTTTAAAGTATTCTAGGGATGGTGAGGATTTAATTTTGAATTTATCTAGTGGAACTCCACAAATGAAGTCAGCTTTATTTACTATTAATAGATTGAATGATATTAATGTCAGAGCCTATCAAGTAATAACACCTAGTCATTCTTCAAATGAAGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 51164-53773 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBER01000005.1 Ligilactobacillus salivarius strain CCuG45735 CCuG45735_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 51164 36 100.0 30 .................................... TGCTTTTGCTTTGTTAATTTTACTGGGAAG 51230 36 100.0 30 .................................... AAAGCTTTATTTCTTTGACCCTGATCACCT 51296 36 100.0 30 .................................... AAAACAGATGGAACTCCACCCGCATATAAA 51362 36 100.0 30 .................................... GCATGTTAGCATATTTAGTTAATGCGGCTG 51428 36 100.0 30 .................................... TGTACTAGCAACAGCACATCAGATTGATAA 51494 36 100.0 30 .................................... TAATATTCTCTTTGATTTTTTTGTCAATAG 51560 36 100.0 30 .................................... TAAATTACGTTGAGCATACATCTTGTGTAG 51626 36 100.0 30 .................................... TAACCAAGATATATTAAGCAATTCAACAAG 51692 36 100.0 30 .................................... GAAGTCGTTTGACGCCAAGTTAAAGCTTGA 51758 36 100.0 30 .................................... TTGCCACTTCGATAAGCGGCACTAGCAATC 51824 36 100.0 30 .................................... ATAATTACCTCTTGCGTGCTTTCTAAGCCT 51890 36 100.0 30 .................................... TGAGTTTGAGCAACAGATTGGTTTTAGTTC 51956 36 100.0 30 .................................... TAATCTATGAATATAAACTTCTCTAGTTAC 52022 36 100.0 30 .................................... AATTAGGATAGAAAAATAATTTTATATAGG 52088 36 100.0 30 .................................... TATTATATAAGGCTTTTCAAGGTGTTATGT 52154 36 100.0 30 .................................... AGTGTAGATGTTAATACAATGTTATGCTTA 52220 36 100.0 30 .................................... ATGATAATTTAACGATTGATAGCCCTACTA 52286 36 100.0 30 .................................... GTATATTGGAAAGCATGTAAAAACACGTCA 52352 36 100.0 30 .................................... AGTTAACGGCGAAAGCTCAACAACGACCGG 52418 36 100.0 30 .................................... TGCTTATATTGTGTTTCCTGATTACAAGGA 52484 36 100.0 30 .................................... ATAACGATTTTAATTACATCTGGTTGCTTT 52550 36 100.0 30 .................................... TCCATCAATTCCATTGTTTTCTTCCTCCTC 52616 36 100.0 30 .................................... AGGAGGAAACAGAATGGAGACAATAAAAAA 52682 36 100.0 30 .................................... TCATAGCTAGGAACATAATGCTTAATTGCT 52748 36 100.0 30 .................................... CGTATGTGATAGTAGATCCGTAGCCTTGCG 52814 36 100.0 30 .................................... AACATTTCATTGTTGGGTCAATGTTTGGCT 52880 36 100.0 30 .................................... ATTTTCGTTGCTGTTTCCAACACTACCTCC 52946 36 100.0 30 .................................... GGATTGTTATACATGATTGACCCTTACAGG 53012 36 100.0 30 .................................... AGAATTGAGTTTTAGCATAAGGCGTTGTAT 53078 36 100.0 30 .................................... ATACGTATATCGGATACTTTATGGGAACAC 53144 36 100.0 30 .................................... ATTCAATTAATGCGACTGATATGTTTAAAG 53210 36 97.2 30 ......T............................. TGGCAAGTAACCATATTGTCCGTTACCTCT 53276 36 100.0 30 .................................... CATCACTTTCTTTTCCACTTAGAACTTCAA 53342 36 100.0 30 .................................... CGTCTGTCCATTGCTTGCCTCCTGTTTACG 53408 36 100.0 30 .................................... TAACTAGTTGATTTAAAAACAACTCTACTT 53474 36 100.0 30 .................................... TTCAGAAATATCATCAGTGTTGTTACGTAA 53540 36 100.0 30 .................................... AACAATCCGTATAAATTGTGTGATTTCTTG 53606 36 100.0 30 .................................... AGGATAAAAAATAAATTAAGAATTAAAGGG 53672 36 94.4 30 .............A.....................C TCTTCGTTCAACCGCTTAATTGATTGGTTT 53738 36 75.0 0 ......T...A.........T...AG...CG..G.C | ========== ====== ====== ====== ==================================== ============================== ================== 40 36 99.2 30 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGTGAGATTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGACAATGATTTAACGAGATTATTCAAGTATTGTCAAGTACATACAGAGACGTTGCTATGGAAAAATGCATATGATAGAATATCCTCAGATGTTAAATTACATGTGGAACTAAATAGAAAACGAATTATAGGTCTAACCAATGTCGTACATTATCTTACCAAAGAAGAGTTTCAGGAACTTGTAAGTCTTGTTAAAGCGACTAACTTATTAGTATTTATAATTGAATTCACAGAAAAGGATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATGTTGATTGGCACTAATGAATCGTTAAATTTTGATTATAAAATAACT # Right flank : CTGAAAAACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAACATAATATTATATGATATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATACGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGTGACTATAAAGTTAGTTTGGATTCAATTTTCGAAAAAACTAGAGAGGGGGAATAATAATGAACTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //