Array 1 45557-43805 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBLC01000022.1 Streptococcus agalactiae strain IT-PW-086 NODE_2_length_275818_cov_65.7007_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45556 36 100.0 30 .................................... TTCTGAAATTGTTGGAAGTTCACGAAGTTT 45490 36 100.0 30 .................................... CACACCAAGACTGGACTGTGTTAACCATCT 45424 36 100.0 30 .................................... ATACTCTTTTTCACCAATTGGAAAGTATTT 45358 36 100.0 30 .................................... ATGCTATTAGTGATGTTGTTACAAGACGTG 45292 36 100.0 30 .................................... ACCTAGGTCGTTAGTCTTTGATGTGTCGCT 45226 36 100.0 30 .................................... AATTTCCAATACTTACGATATCTTCGTCAG 45160 36 100.0 30 .................................... ACGTACCCAGCGATAGACTATGCAGAAAGG 45094 36 100.0 30 .................................... ATCTTTACCAAACTCTTATGAAGAATATTA 45028 36 100.0 30 .................................... AACTGATAATCTTAAAAAAGTGAATGTGAC 44962 36 100.0 30 .................................... AATAGGGCTAGTGCGACACTCTCGAGCTTA 44896 36 100.0 30 .................................... ATTATTTTATAAAGTGACAAATATGTCTGT 44830 36 100.0 30 .................................... AAATGTTAATTTCATATCTACATCTTGTTC 44764 36 100.0 30 .................................... TTATTTAAGACGTGATTTAATGTTAAAACT 44698 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 44632 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 44566 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 44500 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 44434 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 44368 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 44302 36 100.0 30 .................................... GACCTCCTCGAAATTGCTATCATTCCATAT 44236 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 44170 36 100.0 30 .................................... TCCTCTTTCTATGTTTCAATTGCCAATTTT 44104 36 100.0 30 .................................... AAAAAATCTTGAATCATCATATAAAATCTT 44038 36 97.2 30 ..............T..................... AGCTATCTTTTTCGTACTTTGAAATAGTTT 43972 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 43906 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 43840 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //