Array 1 1927-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCKC01000050.1 Moraxella catarrhalis strain 23/95/1 NODE_50_length_2214_cov_10.868711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1926 28 100.0 32 ............................ GATTTTTGATGCGCTTAATGGTGAAAAAGTGA 1866 28 100.0 32 ............................ TGTATAAATGAACATGTTCCCCTACATTTTCT 1806 28 100.0 32 ............................ TTTGACTTTAGTCAGATTATTAAATCGCTTGA 1746 28 100.0 32 ............................ CAGCATTTACAGCTTCATCAATACCAGTAACT 1686 28 100.0 32 ............................ ATCAATGAGCCAAAGAAAATCAACATCGCTGA 1626 28 100.0 33 ............................ AAGTGATGGCGAAAACTGGACAATCATTGATGT 1565 28 100.0 32 ............................ ATCTCCGCCCATGGTGATGACCTCACTTTTTT 1505 28 100.0 32 ............................ ATTGGGCAGTAAGATACCACAGATAACATAAG 1445 28 100.0 33 ............................ ATGCGAATAAGCGGCGATAAGTCAGCTTCGCAC 1384 28 100.0 31 ............................ TAAACCCAATACGAAAAGATGCCAATTTTAT 1325 28 100.0 32 ............................ GCCTGCATAGCTTAGGCGAGCTAGTGTACGGT 1265 28 100.0 32 ............................ TAATTGCTCCCCTAAGATTACCGAACAACGAA 1205 28 100.0 33 ............................ AGTCCATTGTTGAATTTTTGGTACATACTCGCG 1144 28 100.0 32 ............................ GTAAAAAGTCGGTAGGTAGGGCGAGTGGTGAC 1084 28 100.0 32 ............................ AGTTAAAAAAATAAGCAGTTTTAAGACTTGCT 1024 28 100.0 32 ............................ TATATAGCGATACAGCAGATTTTATTGCGATT 964 28 100.0 32 ............................ AAAACCTTGACACGGTCAGGATTTAGCACATA 904 28 100.0 32 ............................ AAGTTTTCAGCGATTGAGCCGAATGTCCGCCG 844 28 100.0 32 ............................ TTTAGATGATGATGACTTTGTCAAAGAAGTGC 784 28 100.0 32 ............................ AAGATGGTAAGATTATTAGTCTAACCAATCAA 724 28 100.0 32 ............................ AGAATACAACTGCTTAGTGTATTACCCAAGCT 664 28 100.0 32 ............................ AAAAGGCGGCCAATACTTTGATGCAGGAAACA 604 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 544 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 484 28 100.0 27 ............................ GAAGATCAGATCTATTATTGAGCGAGC 429 28 100.0 32 ............................ AAACTTCGGTCGATTTTGACACGGTTGAACGC 369 28 100.0 32 ............................ GTGATGATGTTGAAAAATATGGCAAGTTATTT 309 28 100.0 32 ............................ TTATGACACGCTTGGCACTGATTTTAGTGATA 249 28 100.0 34 ............................ CTGCGAAACTCGGTCATTCGCAAGTTTTGCAAAC 187 28 100.0 32 ............................ AAACTGCCAGAGGTGTGCACTGGCAAGCCTTT 127 28 100.0 32 ............................ ATGACGATGCTAACAGAAGAACAAGCAGATTT 67 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 32 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAAC # Right flank : ATCCAAAAACTCACACAGATAAAACGTGATTAACTTCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //