Array 1 15098-16590 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIAZ01000243.1 Escherichia coli C458_10 C458_10_244, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15098 29 100.0 32 ............................. CGTCCAGTGATAGAACTCGACGACGGAACAAC 15159 29 100.0 32 ............................. ATTTTTTCCGTTAGTTAGTGAGCGTGATAACA 15220 29 100.0 32 ............................. AGGGTTACAGAAAAGAAGCATCGCAACTTGAT 15281 29 100.0 32 ............................. CACAAGAAAAAGATATCGCAGCGTCATTTATG 15342 29 100.0 32 ............................. GTCGCTTTTGGCGGCGTGGGCTAATGCTGGTT 15403 29 100.0 33 ............................. TTTTCGGGACGCACTGCAACCTACCAGGACCGC 15465 29 96.6 32 ............................T GTTTCGCCGCAAATACTACCGCAACGGCGCGC 15526 29 100.0 32 ............................. GCGTGGGCGAAATTGCGCAAAATACCGCTGGG 15587 29 100.0 32 ............................. GGCGATACGCCGCGCGATCGCATCCTCAATAT 15648 29 100.0 32 ............................. CGAACAGAAAAACCGTTCTCAGCCAGCGTCAG 15709 29 96.6 32 ....................A........ CAAACGATGAGCGGGCCAACGAATCGCCGTTG 15770 29 100.0 32 ............................. ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 15831 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 15892 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 15953 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 16014 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 16075 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 16136 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 16197 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 16258 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 16319 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 16379 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 16440 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 16501 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 16562 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 84886-85524 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIAZ01000025.1 Escherichia coli C458_10 C458_10_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84886 29 100.0 32 ............................. ACCGCAGAAAAAACCAGCTGGCCTCGAAAGAA 84947 29 100.0 32 ............................. ATCTGGCTCTTCAAAAAACAGCAGCCTGAACC 85008 29 100.0 32 ............................. CCGCCATCACAGAACCTTGCCAGACCGTATCC 85069 29 100.0 32 ............................. CGCCCAGGATCAGCTTACTGCGCACCGTTTCC 85130 29 100.0 32 ............................. GCGGGTTTTTTACGCGTGGGGTTGCAACAGGT 85191 29 100.0 32 ............................. AAAAAACAGCAAAAGATGAACAAAATATAAAC 85252 29 100.0 32 ............................. GATCTAAAAAGGATCTGCGGAACTGAAAAAAT 85313 29 100.0 32 ............................. GGTTAAACATGCCGTTAACGCCATTTCAGCGC 85374 29 100.0 32 ............................. GGTATTTATTGTGCAATTAGCTTTGCATTAAA 85435 29 96.6 32 ..........................A.. TTTAGCGTAAAGTCAACAATTACTTGGCTTTT 85496 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //