Array 1 857843-858605 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822040.1 Streptococcus thermophilus isolate STH_CIRM_1125 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 857843 36 100.0 38 .................................... TGCAATAAATTTCATTATCCTCGTCCATAATTGCGTAT 857917 36 100.0 40 .................................... GGAGAAACCTTAACATAAGATGAAAATTCTTGCGATTGAT 857993 36 100.0 34 .................................... TTTATCAGTTGACGCTTTAACATCTACTAACTCA 858063 36 100.0 36 .................................... AATCACAAAAAACGTATCAGTTTTAAGTGCAATATT 858135 36 100.0 40 .................................... TTTTTGCAATTCAGTAATATCTACATTACTGAAATCTCCT 858211 36 100.0 36 .................................... AATGCTTCAGAAAAAGTTACGTCGTTTTTTTCGTTT 858283 36 100.0 35 .................................... CCCACTCAGCAACCTCATTAATTCCGACAGGTTTG 858354 36 100.0 34 .................................... GTAATTGCTGAACGACTAATTCCTATTTCTCTTT 858424 36 100.0 38 .................................... TATATCGCCTTACCATTATCATCATAATTACATAAGTA 858498 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 858570 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ======================================== ================== 11 36 98.5 37 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AAGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATTCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGG # Right flank : TTGAAAATTTTGAAAATATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACACCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1311525-1310103 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822040.1 Streptococcus thermophilus isolate STH_CIRM_1125 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1311524 36 100.0 29 .................................... GCCGTCAAAGACCAGGGGAAAGGCTTGCA 1311459 36 100.0 30 .................................... TGTAAGAACAAGCTTTGTCCTATGTGCAAT 1311393 36 100.0 30 .................................... GTTGAAGTGTTTCGTTGCAACAATGACAAG 1311327 36 100.0 30 .................................... TTGGACTAGATAACGATAGCGCAGGAAGAC 1311261 36 100.0 30 .................................... GGTGACTGTGGTTACTATGGTGGTTATTAC 1311195 36 100.0 30 .................................... AATGATAGCTACACCCCACACGAAGACACA 1311129 36 100.0 30 .................................... TGTAAGAACAAGCTTTGTCCTATGTGCAAT 1311063 36 100.0 30 .................................... GTTGAAGTGTTTCGTTGCAACAATGACAAG 1310997 36 100.0 30 .................................... TTGGACTAGATAACGATAGCGCAGGAAGAC 1310931 36 100.0 30 .................................... GGTGACTGTGGTTACTATGGTGGTTATTAC 1310865 36 100.0 30 .................................... AATGATAGCTACACCCCACACGAAGACACA 1310799 36 100.0 30 .................................... GGGTGTTATATGGTCTCCTACTCGTGCGTT 1310733 36 100.0 30 .................................... AAGTTTGCTAAAATAAACGCAAAGAACAAA 1310667 36 100.0 30 .................................... TAAGACGTCGCCTTGTGGTACGTGCTGTTT 1310601 36 100.0 30 .................................... AATTACAAGAGCCGAGTTGGCTGAAAAAAT 1310535 36 100.0 31 .................................... TGTATGGAAGAATAATCTCAACCGCATAATC 1310468 36 100.0 30 .................................... ATCGTTCGTAGCTAGTCGTTTGGCCAACCT 1310402 36 100.0 30 .................................... ACAACAGATAATGGACCAGCCTCTGGAGAG 1310336 36 100.0 30 .................................... GCACACCGTTATAGAAGTCCTAGACAAAGG 1310270 36 100.0 30 .................................... AGGTAACATTGGTTCAACAGCAGTCTAATT 1310204 36 100.0 30 .................................... TCCACTATAAGTCATTAATTACAGTAAGTT 1310138 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TATGAGTGTCAGTTTCAAAAATAAGCGAAATCTTGATATTTTGGTCTTTGATTCCGATTAATTCTGTGTTATTCTTAATAAGTCTCATAAGTTCTTCCTAATGGTAGTTTCGTCGCTTTTCATTATAGTTCTTATGGGACTTTTTGTCTGCATTCAAAAAGCTCTATAATCTCTACAGTGGTTTTACCCACTACAGAAATTATAGAGCCGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGGACATGTTATACGAATATCTAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTCTGATTCAGGTAGAACCTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //