Array 1 214986-212454 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRN01000003.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_28 contig0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 214985 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 214924 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 214863 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 214802 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 214741 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 214680 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 214619 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 214558 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 214497 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 214436 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 214375 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 214314 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 214253 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 214192 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 214131 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 214070 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 214009 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 213948 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 213887 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 213826 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 213765 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 213704 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 213643 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 213582 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 213521 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 213460 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 213399 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 213338 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 213277 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 213216 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 213155 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 213094 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 213033 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 212972 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 212911 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 212850 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 212789 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 212728 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 212667 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 212606 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 212544 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 212483 29 96.6 0 ............T................ | A [212456] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232613-231609 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRN01000003.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_28 contig0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232612 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 232551 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 232490 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 232429 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 232368 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 232307 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 232246 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 232185 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 232124 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 232063 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 232002 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 231941 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 231880 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 231819 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 231758 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 231697 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 231636 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //