Array 1 30587-30269 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNM01000012.1 Selenomonas sp. CM52 ctg120007584576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 30586 36 100.0 35 .................................... GTCATTGCGACTACCGATAGGCCCGACTTGTACGA 30515 36 100.0 34 .................................... TGGAATATCACGTTCCTTACAACGGGACTTCGTA 30445 36 100.0 35 .................................... TGTATTGGGTCGTGTCCGACTTAATTCCCTTCACC 30374 36 97.2 34 .........A.......................... TCGACCGTTGTGACGTTGTAGTGTGCATCGTACT 30304 36 91.7 0 .........A..................G..A.... | ========== ====== ====== ====== ==================================== =================================== ================== 5 36 97.8 35 ATTGCATGCGATCCATACCGCTTGCGGTATTGAAAC # Left flank : CATCACATGAACCTGTTTCGTCATCGAATCCTTCCCCCAAAAAGCCACTCGCAAATGTATTTCCAGCAGTCTGTCTGCGTTGTTGAAGATGTCGCGCAAAAGAGAGTCCCCGTATGCATGCTGCGGTTTCTTCATAGAACGGCTCACTTTGTCATATTATACTATAAGCCGTGCCATCCGGACAAGGAGTGCTGGTGGCTTCGGCTGCATCATCCTGCGCATCGAAGCACTCTCACCGCCCTCATGTACACGGTTGACAGCGGACATATTTCTATGCTATACTTTGTTACAGTGAAGGGAAGGATTTCGGGGAAAATGCCATGAGTTTTAGATTTTTCCCGTGGACAAAAGTTTCCTTGATATTACAGGGTTTGCGGACGTTTTCAGCCGATTTTGGCGACAAAAAAATCCCGCGAGGTTGCGGCGATCTGTTCAAAAGGGCGCTCCGTTTAGAAAACCCGCTTCTGGGTTCAGCTGTCCCAAGGGCTGTGAGGGACGGT # Right flank : AAAGGGGCTGTCGCACATAAATCATGTGCGGCAGCTTTTTTCATGCATAAAAAAGCCTCCGCCCTAGCAAAAGGGCGGAGGCGGGTGTAAAAAAAGAGGGGCTATTGCATAAGTCGAATTCGACTCATGCAACAGCCCCTTACGCTAAACCTTCAGGACATACGTTCAGCCACTAACCGAATCAGATCTCCGCGTCAGTGGATCTCAATCTGCTTGCGTTGAGGCTCGCCCGCTGTTTTTGGCAGCTTCACCTGCAGTACACCGTCCTTGAACTCCGCGTGGATATTCGCTTCGTCGATGCCGTCGATGTAGAACGAGCGGCTGACCTCGCCCGTGTGACGCTCACGGCGGATGTAATTGCCCGCCTCATCCTTCTCGTCCTTCGACTCGTCGTGCGAGGCGGCAACGGTCAGATAGCCGTTTTCATAGTGCAGAGCGACGTCTTCCTTCTTCATGCCCGGCAGATCGGCAGTCAGTTCGTAATGATCGTCCATCTCCTT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCATGCGATCCATACCGCTTGCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 33800-33480 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNM01000012.1 Selenomonas sp. CM52 ctg120007584576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 33799 36 100.0 34 .................................... CAAACAAATAATTTGATATGCTCCCCATTGCGAA 33729 36 100.0 33 .................................... AATCAAGTTGGTTACAAAACTCTTGCCCGTTAA 33660 36 100.0 36 .................................... AAATCAACCCAGTAATCTGGGTGATCCTGAAGGATT 33588 36 100.0 37 .................................... TGTCATACCGTCCCCCGTATGTTTGTTGATAAATTCC 33515 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 99.4 35 ATTGCATGCAATCCATACCGCTTGCGGTATTGAAAC # Left flank : ATCGTGGCGAGCGTTATATCGCTGGCTGTCGTTTTAATGCCAAGAAGCGCCTCATAGATTTCCGGCAGTCTGTCTGCGTTGTTGAAGATGTCGCGAAAAAGAGAATCCCTGTATGCGCGCTGCGGTTTCCTCATCGAACTGCCCCCTTTATCATATTATACTATAAGCCGCGCCATCCGGACAAGGAGTGCTGGTGGTTTCGGTTGCATCATCCTGCGCATCGAAGCGCTCTCACCGCCCTCATGCATACGGTTGACAGCGGACATATTTCCATGCTATACTTTGTTACAGTGAAGGAAGAGATTCTCGGGGAAAATGCCATGAGTTTTAGATTTTTCCCGTGGACAAAAGTTTCCTTGATATTACAGGGTTTGCGGACGTTTTCAGCCGATTTTGGCGACAAAAAAATCCCGCGGGGTTGCGGCGATTTGCCAAAAAGAGCGCTCCGTTTAGAAAACCCGCTTCTGGGTTCAGCTGTCCCAAGGGCTGTGAGGGACGGT # Right flank : AGGACAGATTCGTGCAGAATCCCTAAGAGGATGAAAAGAAGCCCTGCGGCAGAGCCGCAGGGCTTCTTTTGTCGGTATATGTATGCAGTTTTCCTAGCAGTGTATATGTCTTTCGAGCAGCAGCAGCGCTTCCTCGAAAGGCGGCCTCAGATCTTGTGCCCCGCCGGGCTTGCTGTATCCTTCTTCCTCCATGACGTTCCTCATGGCCGGCCTCGCGGCAAAGACTCGTCCGGACGCTCACCGATACTCGCGAAACCGCGTGAAGACGAAGCGGCTGATCTTGCGTGCCGAACCGTCTTCCGCCTGCTCCTCGATCGCCTCCCTGCGGCTCGTTGCCGCAAGGACAGTTACGCCCGCCGCACGCAGGAGGTTCACGAGATGGTAGACGTAGGTGAATTCGCCCTGACACAATACGGCGCAAGGCTTCTCCGCCAAGATCTTCGCGGCATTCTCCACAGCGATCTTCGCGACGCGCTCCTCGTCCCAATCCGCCCCGATGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCATGCAATCCATACCGCTTGCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 52813-53075 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNM01000027.1 Selenomonas sp. CM52 ctg120007584580, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================ ================== 52813 35 100.0 36 ................................... TTGTCGACCATGCGCTGAAACGCCATCTCATACGCA 52884 35 100.0 39 ................................... GATACGCGATCGGCCATGAACATGAAGAGCAGCACGAGC 52958 35 100.0 48 ................................... TCGTCTTCCGCCGACCAGTCATATATGGGGTAAAAACTATATAATATA 53041 35 88.6 0 ...........T...................T.GT | ========== ====== ====== ====== =================================== ================================================ ================== 4 35 97.2 41 ATTTCAGAACACGAACCCCGAAAGGGGACGGAAAC # Left flank : TCTATGCTATGGATCGGCGCAATGCGCTCTTGTCCATGCCATTGGGGAGAGATGGTATTGCAATCTGCCGCTACCTTGTCGAACAAGGGATAGATGTCAACTATCGTTCAAACGATGGCACGACGCCGTTGATGTATGTATCTCACACCTATACATCTTCCGAGGCAAGGCACGAGCTTCTACAGATTCTTCTCGATGCAGGAGCGGATCCTTATCGGAAAGACAAGTCGGGGCATACGGCGATTGACTACTGCCTGCTGAACAACGATTTGGAAAACGCCCAACTCTTGCAACGATATTGATACTGGGAAAAGGAAGTAGAAATCATTGTCCTTCTGCTTCCTTTATGTTATACTATAAGAGAAATCCGCGCCGCATCAACAATGACAAGGCTTGAAGCGTATTTTTTCAAAGAAATGGCGCAGAAAAGAGACAAAAAAACAGTCCGCGCCGCAAACAGCATCTTGAAGCCGCGTAAAATCAGGGATTGCAAGATGAGG # Right flank : TTCTTGGAGGTGTGAGCATGAGTTTTGTCTATATCACGGAAGAGGGAGCTTATGTTCAGAAGCGCGGGGGGAATTTCGTTATCGGTCGCAACCGTGAGTGCATCATGGAGATTCCCGAGGAGGTCTTGGAGGGGCTGACTCTGATCGATCGCGTGCAGGTTTCCTCACAGGCAATGGTGGAGCTTCTTCGCTTGGGCATCCCTGTCACATGGCTGTCGCGCACGGGGGCGTTCTTCGGTCGTCTTGAATCGACGCGCCATGTGCATGTCTTTCGGCAGGAGCAGCAGATCTTGCTCAAGGGTTCGTCCTTTTATCTCGCGCTGGGACGCAAGGCGATTGCAGCGAAGGTGTATTTTCGCGCTTTGGGGCGACTCGTGCCTGAGGAGTCTGGAATGCGAGGAGATGGAGTTTGTCGCTGCTGACGAGCGCCGTTACATCGTGCTTGTAATCTACGACATCGTGGACAACAAGCGCCGCAACCGCATGGTCACGTGTGTCGA # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAGAACACGAACCCCGAAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 109816-110499 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNM01000020.1 Selenomonas sp. CM52 ctg120007584581, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 109816 36 100.0 38 .................................... CCCAATGCGCCACAACGCCCCGCCCTTTAGGGCTGGGA 109890 36 100.0 36 .................................... TCAAGCGAATTTGTTCGAAGCATCCACGATAGGCTT 109962 36 100.0 39 .................................... CGCAGACTCTACCTTCTCAACAGCAACCTCGTCAATGTT 110037 36 100.0 35 .................................... GATGGAAAACAAGGAGAGAATTTGTATGCTTTTTC 110108 36 100.0 34 .................................... AATGTAAACAGTTTTCCTCGTATTATTCTTTGCC 110178 36 100.0 35 .................................... TCTCGTTCGAGCAAGTCACACTCATCCTCGTACCA 110249 36 97.2 35 .........................A.......... TCTTTTGCAAGAGCCTCAACATCCCAAACTCTGGT 110320 36 100.0 35 .................................... TTTCTGAGTTTGTCCTCAGAAACGGAATCAATCTT 110391 36 100.0 37 .................................... TCGAATTCCACATACGAGATGTGTCCTGCGTTGCAAA 110464 36 91.7 0 ......C.....................G......A | ========== ====== ====== ====== ==================================== ======================================= ================== 10 36 98.9 36 ATTGCATGCAATCCATACCGCTTGCGGTATTGAAAC # Left flank : GCGACAGCTTTTTCATGCACAAAAAAGCTTCCGCCCTAGCAAAAGGGGGGAGGCGAGTGCAAAATAGACTTATGCTAAAAAACCGAATCTTACAACCAGATTATACCGCATGGAGCGAAAACTTATCAACCTTGCCTGCCTCTAAATTTTGAAATGCAGATTCCAAAGAATGACCCGGTTCGCCTGCTGCGCCAATCATGCACAGCCCCGTTTTGCTGGGGGACGTGCCTTTCGCGCACGGTGTCACGCACACGGTTGACAGCAATGCGTTTCTATGCTATACTCTGTTACAGTGAAGGAAGAGATTTCGGGGAAAATGCCATGAGTTTTAGATTTTTCCCGTGGACAAAAGTTTCCTTGATATTACAGGGTTTGCGGACGTTTTCAGCCGATTTTGGCGACAAAAAAATCCCGCGAGGTTGCGGCGATTTGCCAAAAGAGCGATCCGTTTAGAAAACCCGCTTCTGGGTTCAGCTGTCCCAAGGGCTGTGAGGGACGGT # Right flank : AAGGACAGGTTTGTGCAGAAAATCCCTAAGAGCATGAAAAGAAGCCCTGCGGCAGAGCCGCAGGGCTTCTTTTGTTATGGGTCGTGACCCAGTGTTGCATGTACAGTATGCGACACAATAAACCACCCGCTATGCGGGTAGAAGACAAACGGAAAAATTCATGCTGTGCATCACGTTGCGGATGGAGGCGGTCAAGCCTTCCTGTCTTCCTTCCTGTCGTCCATCCGCTCTAGCCTCTTCATCTCCATCGTGCTTTCTATCACTAGAGAAATATTTCTTCTCATTCCGGCAGGAATCTTCCTCAATTGCACGAATATTAAAAGTGAATAAATTACGCAAAGGAGGCTTTTTGATGGAGCTGAAAGCACTGCTTTTCGACACACGCTCGATTCAGAAGTACATCTTTTCCAGCAGCCGTCTCAAGACGCAGATTGGCGCTTCCTATCTCGTCGACCGCATCTTTGACGATGTGCTGCTTCCCGTCATCCGCGAGGTATGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCATGCAATCCATACCGCTTGCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 119033-119351 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNM01000020.1 Selenomonas sp. CM52 ctg120007584581, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 119033 36 100.0 37 .................................... TAGGTGCTTTCTGAAATCTCTTGAAGAACTCCTCAAC 119106 36 100.0 34 .................................... GAGGGAGCAATTCCCCTCCATTTCCAAGTACCCA 119176 36 100.0 33 .................................... AAGGTCAAGACGTTCTGGCATTGCTTTCTTCAA 119245 36 100.0 35 .................................... ACCCCAATTGGCTACCATCGCGCAAGCTGCGAGGA 119316 36 97.2 0 ............................G....... | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 99.4 35 ATTGCATGCAATCCATACCGCTTGCGGTATTGAAAC # Left flank : GAAGCCTTCGAAAAGAGCATGAAGGAGCTTCGCTGTCTGCTCGACTGGAACAAGACGAGCCTTCCCAAGTGGCAGGAAAAGACCGCCATGATGCGCATCGGCGACAGGAGCGACACGCGCTTCAAGGATCGCGTGATCTTGAAGAGCGCACTCGACTTCGCACGCTGAACAAGAAAGGGCTGCCGCACATTGAATCGTGTGCGGCAGCCCTTTCGTACGCAAAGAGCATGGTCATGTATGCAGTTGTACACGGTTGACAGCGGACATATTTCTATGCTATACTTTGTTACAGTGAAGGGAAGGATTTCGGGGAAAATGCCATGAGTTTTAGATTTTTCCCGTGGACAAAAGTTTCCTTGGTATCACAGGGTTTGCGGACGTTTTCAGCCGATTTTGGCGACAAAAAAATCCCGCGGGGTTGCGGCGATTTGCCAAAAAGAGCGATCCGTTTAGAAAACCCGCTTCTGGGTTCAGCTGTCCCAAGGGCTGTGAGGGACGGT # Right flank : CAAAAGGAGAGAGTCTTGCGACTCTCTCCTTTTGCTGTGCCAGCTTTTCTATGCAATATATACAAAAAAGCCGCGCAAGTGTCGGATGACGCCTGCGCGGCTTTCTGTATTTCGTTGACGATGTTTCCGTCCCCGTAAATCAAATAAACACGGGGAGAGAATCAGTGGCTGGCCTACCTCCCCCGTGTTTGGTGAAACACGGCAGAATAGGCGTGTAGATCTTGATTGTCTACTTGCCGCAAACATAGTATACCACATTGGCGACAGAATTGCACGAAATAAATCGAAAATCGGGAAAAAGAATCTTCTAATCTTCAAAAATGCGCTGTTTCAAGAACTGCTCCTGCCAAAGGAAAGCCCTGCCGGATGCGGTGCATTCGACAGGGCTTCGAGAACAAGGTCGATCTATTTGCGCATTTGCAGGGCTGCGGTGCGGTAGCGGTAGAGCAGTCCCAAGAGCATGAGGATGCCGAAGGTCGTGAAGGCGGACAAAACGGCAG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCATGCAATCCATACCGCTTGCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 66382-66984 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNM01000009.1 Selenomonas sp. CM52 ctg120007584550, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 66382 36 100.0 34 .................................... CGCTGAACGCTTCGGACTGAACCGTAGCGCCAAA 66452 36 100.0 36 .................................... GTTCCCCTCCATCTCCAAAGATCCGTCTTCGTGGGC 66524 36 100.0 35 .................................... AGCAACTGCGCTCTCACACAGCAGTTTACGAACAT 66595 36 100.0 34 .................................... AAGTCGACGTCCGCAGGGCTGACGTTTTCCAGCA 66665 36 100.0 34 .................................... TTCCCCTTGCGGGGCTTGTGCTCGTAGTAACGGC 66735 36 97.2 37 .............T...................... ACTTCAGTAACATCCTCAGAGAGACGAATCGTCCATC 66808 36 100.0 35 .................................... ATTACGAAGATACCCCAATGCTTGAAACACCAATT 66879 36 100.0 34 .................................... TCCACATTGAAATCGACCCTGAAATTGAACTTGA 66949 36 86.1 0 ...............................TTTTT | ========== ====== ====== ====== ==================================== ===================================== ================== 9 36 98.1 35 ATTGCATGCAATCCATACCGCTTGCGGTATTGAAAC # Left flank : GCTTTGAATGAAGAAGAGCAGCACGCACTCCTTCTCCTCGCCCAATTCGCCAACTTCTCCGGCGTCGGCAGACTCACAGGACAGGGATTCGGCGAGACGCGGGCGCTGTATCGGCTCTTGAGATGATCGGCATACCGCAGGCGGAACTAAAGAAGAGGCTGTAGGCGACGCTGTAAGAGCGGCAGCAAAAGCGGGAACGCTCTCTATGAGTCTTCCCGCTTTTGCCGTTTGCGGAGGAAGGAATTTCTTAGGCCATTGACAGCATTTCAATTTCATGCTATACTTCGTTACAGTGAAGTCCGAGATTTGCGAAAAGATTCCATGAGTTTTAGATTTTTTTCGTGGACAAAAGTTTCCTTGATATAGCTGGCTTCGCACCCATTTTAAGCCACTTTTTGCGACAAAAAAATTCCCTGAGGTTTGGGGAAAAGTGCAAAAGGGAGGGCGTACTAGAAAACCACCTTTTGGGTTCACTGTTTTCAAGGGTTCTGGGAGACAGT # Right flank : TTATTTTTAGCGCGTTTTTTCAAACGCGCGCTTTTTTTATGGCATAATGGAGTTGTTGGAAGATTCTTTTTGAGGAGGGATAGCAATGTGTGTTATTTATATGATGTCGAAGGATACGAAAGCAATCAAAGACCATGGCAGGCTGCTTCTTTATCGCAAGAATGAGAAGATCGCGAGTCAGCCGATTTCGCGCATTTTTAGGGAAACGCTGATAAAATGAAGTTGCCCAGATTTGCACAGATGCGCTGTGCCTATGGCGGTCAACGTCAGCCAATCATGCGGCGCACTTCGTGCTTGCATTCTTGGGACGTTTTCGCATACGAGCCGTTGCCCAATCACCTGCGTCCTTCGGACTTGGCTCTTGGACGGCTCAGCAAGGAGACAAACCGCAGGCGTAGCAGAGCTACGTCGAGGATTTGTCGACGACGAGAGGACAGCGTAGATGTGTGAAGATGGGCGGCTGAATTTATCAGTGGTTCCCTATCGTTATGGTCACGAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCATGCAATCCATACCGCTTGCGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 8908-14034 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNM01000046.1 Selenomonas sp. CM52 ctg120007584570, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 8908 32 100.0 33 ................................ GTCGAGTGCGAAATAGATATTGTCGCCTGCCGT 8973 32 100.0 35 ................................ ACGATGTAGCTGCCATCCTTGTAGCGGATGCTCCG 9040 32 100.0 33 ................................ TCCGTCGAGATGAAAGAGCCGACGACGGGAAAC 9105 32 100.0 35 ................................ CTTTGGACGGCTCAAGCCGCGCCATATCGCTTTGG 9172 32 100.0 33 ................................ AGCGCCGGGTATGTTATCCCGACGCATCGCGGA 9237 32 100.0 34 ................................ GATGTTGCCGTGGGTATCATCGGCAATTCCATTT 9303 32 100.0 34 ................................ AGTTGTAAAGATTTGCCTTGCAACTGAGAAGAAA 9369 32 100.0 38 ................................ CCTGCATAAGGGGGTGGAAGCATGGCGAAGAAGGCCGT 9439 32 100.0 35 ................................ CTGTCAAACGAAGGCGACGCCGATCTCGTCAAGGC 9506 32 100.0 33 ................................ GCAAGATCGCCGCCGAACTCGGCATGAGTCCGA 9571 32 100.0 34 ................................ CCTGCCGGAGTTGGACAATGCGCGAGCGCTCCTG 9637 32 100.0 33 ................................ TGCAAACCCTGTAAGCCGACAAAGGCCAACGGC 9702 32 100.0 33 ................................ GTGTATAGGAGTGAGTGTTGAAAACGTACAAGC 9767 32 100.0 34 ................................ CGCGATATTGAGATCACGTTCACGGCGAACATTC 9833 32 100.0 34 ................................ AATCGGGATGCACACACATTCTCGAGTTTGTGGT 9899 32 100.0 34 ................................ CGTCCCGATGCTGCCCTCACCGTTTGCACGGGGG 9965 32 100.0 33 ................................ GTGACGATGTTGCAAAGTTTAAGACCTACGTTT 10030 32 100.0 34 ................................ GCGTGCTCTATACATCAAGCGTCACCTCCCCATA 10096 32 100.0 34 ................................ ATTGTCGTCGCGTGCGGATAGACGCGCGAACCCT 10162 32 100.0 34 ................................ CACTTGATATTGTGGAGATTCTTCAACACGTCCG 10228 32 100.0 34 ................................ ATCACGACGCAGACAGGCGCACCGGGGGCGATGC 10294 32 100.0 33 ................................ GATAGCGAGGAGGAATTTGAGGGGCTTTGGTGG 10359 32 100.0 34 ................................ TGTATCGTCCATCTTGACGCTCGCAAGCGGCGCG 10425 32 100.0 33 ................................ CTCGGTATTTCCTTGACCGCCGCCATGACCTCA 10490 32 100.0 33 ................................ GTCCGCGACGCCTGCACCATCTTGCGGTAATCG 10555 32 100.0 34 ................................ CCCGCACTCTCTCACCCATCGCCTGAACACCCTT 10621 32 100.0 34 ................................ TGGCGGCTCATGCAGGCGCAGACGCGCCATGGCA 10687 32 100.0 35 ................................ ATCAGCAACCCCGACGAAGAGGAATGGCTGCGCGA 10754 32 100.0 34 ................................ GGGGCTGTTTTTTATGCTCGTGGATTGACGTGTG 10820 32 100.0 33 ................................ TCTCCCGCGATCAGATTGCTCGTCACGCGCCAC 10885 32 100.0 34 ................................ GCCCGCCGCATCTCGTCGTCCACCATGATCGTGG 10951 32 100.0 34 ................................ ATGAGGGAAACCTCCTTATAAAAGATGTGAATTC 11017 32 100.0 34 ................................ CAGTGCTTCCGCGCGATGCGATTTTTTATGCCGC 11083 32 100.0 34 ................................ CCGGACGTAGCCGATGAAGAGGTGCTCGGAACGG 11149 32 96.9 35 .........T...................... CAAAATGCTCAGCCCCTCGTTGCAGAGGAAGAACC 11216 32 96.9 34 .........T...................... CCTGAAATCGAAAATCCTTTACTGCATAGCGCAG 11282 32 96.9 34 .........T...................... CTGCCCGCGGCGGTTGATACTTTCCTTCTGCTGT 11348 32 96.9 34 .........T...................... ACGCAGTATGGCGACCATCTTGTGCGACCCCTCG 11414 32 96.9 34 .........T...................... GATACAGAAAGCTTGCGATTTGGTAAAATTGATA 11480 32 96.9 35 .........T...................... GTCCATTTGGCATACAGCTCGGCGAAGGTTGCCGT 11547 32 96.9 34 .........T...................... CTAGTTGCAAAGCAAACCTTTACAACTGAACATT 11613 32 96.9 34 .........T...................... TTGAAAGAGATGTCCGTGAGATAGCCGCGCCGGC 11679 32 96.9 33 .........T...................... GCGACGGTCGTCGGACTCATGCCGAGTTCGGCG 11744 32 100.0 33 ................................ AAGGCTATGACAGCCTGAAAGATAAGTATATTT 11809 32 100.0 34 ................................ ATCCAAGCGTAACCCGAACAGTGTGATCTGCGCA 11875 32 100.0 35 ................................ TTGCATCCACGGCTGTTATGGTCAAGGGGGCTGTG 11942 32 100.0 34 ................................ GACGAAGCTCGGCCTCGCGGCGACCGACCGCTTG 12008 32 100.0 34 ................................ TGGAGGTGTTGTTGGAGCGTGGCTGGTCATGAGA 12074 32 100.0 34 ................................ CAGCAGCTCCCTGTCGACCGCCGCAACTTGGAGT 12140 32 100.0 35 ................................ TACGAGGCCGTGCCCGACCGCTCCCGGGTCGGGCA 12207 32 100.0 34 ................................ TTACGTGAAGCTCGAAGACATCGGGAAGGCCTAC 12273 32 100.0 35 ................................ TTGCGTAGGACAAACAATTACAACAACGCCAGAAG 12340 32 100.0 34 ................................ TACACGATACGTCATGGCTGTCGCTTTCCAGCCA 12406 32 96.9 34 .........T...................... GATAAAACAGATGTAGAAATCGTAGATACGGTAG 12472 32 96.9 34 .........T...................... ATTATTTATGGCTGTCTTTTGGGCGACCGACCTG 12538 32 96.9 34 .........T...................... AGGGTGTGCAAGAGCAGCCGCAGATCGGATCGCT 12604 32 93.8 34 .........T....A................. AAGGGAAAGAACAGAGAGGAGTAAAAAATCATGA 12670 32 96.9 34 .........T...................... GACTTCGCGAAAATCAAGGGCAGCACGCTTTTGA 12736 32 93.8 34 .........T....A................. ATCGGAGATGGGGATATAGCCGGCGGTGATGTAG 12802 32 93.8 34 .........T.T.................... GATTTATTCGCCTTGGGTGACGTTTGGCGATGTG 12868 32 93.8 34 .........T.T.................... TATGAATGGGTGAAGGTCATGAACGATGAGATGG 12934 32 96.9 35 .........T...................... AACAAGCTGGTGCTAGGCAGGACGCTCACGGAGGA 13001 32 96.9 33 .........T...................... TGGAATCATGTGTCTGGACTGTTCTCGACGCCG 13066 32 96.9 34 .........T...................... ATTTTTGCCAAACCGGGAATCGAGATGTCCACGG 13132 32 93.8 35 .........T.T.................... GATAGATGGGCTTACTGGCAGATCGAAGAGAACAT 13199 32 93.8 35 .........T....A................. CTGGATTGGATAGCCGTCAAGACCTATGCACATGG 13266 32 96.9 35 .........T...................... GCCTTGACGAGGCGGCGCACCGTGTTGATGCCGAT 13333 32 96.9 34 .........T...................... GGCAGGCCGCGCACGTTGACTTTGACCGCCTGTA 13399 32 96.9 34 .........T...................... TAGTATGATTGACTTATATAATTAGATATGATAT 13465 32 96.9 34 ..............A................. TCCCGCGCCGCATCTACTCCGTATTGCGCTTCTG 13531 32 96.9 34 ...................T............ TCGACTTCGCCCGTGGTCTTGTCCACCGTCACGA 13597 32 96.9 34 ............................G... AGGTACCTTGACGTTCGGCAGCTCCGCCGTCGGC 13663 32 96.9 34 ............A................... CCGGATCGTGCTTCCGCCTACGCAGCTGGAGCTG C,G [13669,13678] 13731 32 93.8 34 ...........T.......T............ ATCTAGTGCTGTTGACGAAAACGGTACAGAGCGC C,G [13737,13746] 13799 32 93.8 33 ...........T.......T............ CCTGCTGTGCCATTGGCGGAAGCTGCTGAAAGG T,A [13806,13815] 13866 32 93.8 34 ...........T.......T............ CGTGACAATCGAGCAAAACAAGCAAGGTAAATGA C,G [13872,13881] 13934 32 90.6 34 ............TG..............C... CTGAAATACACCGACAAGAAGAACCTCCGCACAT A [13946] 14001 32 75.0 0 ...A.T.............T..AC.CA....G | A,T [14022,14031] ========== ====== ====== ====== ================================ ====================================== ================== 78 32 97.9 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAT # Left flank : ATCCGGCGTTTCTGTGGAAATAAGCAGGAAAGATGGAGGGGGCGGCGGAAATGTTGATTCTCGTGACATACGATGTCAATACGGAAACACCTGCCGGCCGCACACGCTTGAGAAAAGTGGCGAAATGCTGCATGCGCCACGGACAGCGCGTGCAGAATTCCGTGTTTGAATGCGTTCTCGATGAAGCACGCTTCTGCACCTTGCGGCATGAATTAACAACGTTGATTGACCAAGAAAAAGACAGTCTGCGTTTTTATAACTTGGGCAATAAATACGCAGGAAAAACGCAGCACGTTGGTGCAAAACCAAGTTATGAAGCTGAAGGAACTCTGATGCTGTAGAAGGCATCTCCTTCGCGAGAATGGCCGCAAAATCTCTGTGCGAACCCGTATCACACAGAGGACTTTGCGACGAAAAATGCCTGTAACAGCACGCCCAAAAATGAGGTTCGCGAAAGATATAGCGCGACCGCTGTAATTAAGCCCGTGTAAACAGGCACA # Right flank : GTGCGACACTCAAAAACGCGAGGAATACGGGCTTTGGTAAGCCTCCTGTGAGGCGTGCTTGGTCAAGGATGCGCGACAGAACATTTTGCGCATTGAGTCCTGAAAAATGATTTAAACAAAACTCTTGGCACACCCAGAACTCGCGAAAAAAGGAGAGGCATCATGGAGCAGCGAATCAAATACAATCCAAAGGATTATGTCGACTATCTGGAAGAGAGCATGACGCTTTTCGCCGAAGCGATGCAGGGGGGAGATGTATTCCTCATGGAACACGCATGGCGGCGTATGTACAACGACACGAAACAGGCGATGAAGGAATGCTGTCTCCCAAAGACCGTGCTGAGATGCTTTTCTGTTATGACGAGTTGATTCCGAATGCTCGACATTCTATATAGGATGGCATACGAATCACTAGGACAGTTCGAAGAAACGAGGGATTCATCATGGAAGCAGTCTATAAGTACAATCCGCAAGATTATGAAGAACTTCTTCGCGACTAT # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAT # Alternate repeat : GTCGCGCCCTACGCGGGCGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //