Array 1 725124-723994 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOAJ01000002.1 Pseudomonas aeruginosa strain PA206 NODE_2_length_845090_cov_23.665650, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 725123 29 100.0 33 ............................. GTCACGGTGAACGGCAAGGGCCTGGTCACTGGC 725061 29 100.0 32 ............................. CTGATAGGCACCATGAACAGCTACAACCCCGC 725000 29 100.0 32 ............................. CGCTGGGGCGAGCGATTGCCGGAATGCCATCA 724939 29 100.0 32 ............................. ACCTCATGCTCGATTGCATGGACGGCGTCGGC 724878 29 100.0 32 ............................. GCGTTTGTGGACCGCTCCACGTCGCCCCAGGG 724817 29 100.0 32 ............................. AGGCAGCCCCGGCTCCGGCCAAGGCCACCGCT 724756 29 96.6 32 ...........G................. GATGGCGACCTGAAACGCGCAGATGCGATGAA 724695 29 100.0 32 ............................. GGCAGCCGGCAGATGACGGAGACGGCTACCTA 724634 29 100.0 32 ............................. ACGGCCCTGGCGATCGCCAGGGTGTCAGGGTG 724573 29 100.0 32 ............................. TTCACCGTTCACGCCGTACTCGACAGCATCGA 724512 29 100.0 32 ............................. ATGTTGCGGAAATGGTCAGGGTCGCCGCGCAA 724451 29 100.0 32 ............................. GCAGGCCGGTACCTCGCCCAGCGTGCGGGCCA 724390 29 100.0 32 ............................. ACGTTCCCCAGTGGATAATCCGAGTCATAGAA 724329 29 100.0 32 ............................. TAGGTGCGAAGCAGGCGCTGTACCGTGTGATC 724268 29 100.0 32 ............................. TTCTCGCCGGCCTGCTCTCCCAGACCGCCCTC 724207 29 100.0 32 ............................. AAGCCGGTATTCGTTTCCCAGGTCAACCTGGA 724146 29 100.0 33 ............................. CGGCCGCCACCGACTTGGGCAGGCTTTTCCAGC 724084 29 100.0 32 ............................. GCGAACCAGGTGCGCTACGGCGACATCGTCTG C [724075] 724022 29 89.7 0 .G..........G..A............. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCCCGCATCATTCCCACCATCGAAGAGGTTCTGGCCGCCGGCGGCGTCGAGCCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGTCGTAGTGATGGAAAACGTCCCGCCGCGCTTGCGTGGACGTCTGGCTATCTGGCTACTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTATGAGGAGGGCAACGTGGTAATGGCCTGGGCCAGCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGTTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCATGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCCTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGTTGGGCGGGAACCGGCCAGAGCAGGGAGAGGCCGGGTTGGCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 735244-734299 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOAJ01000002.1 Pseudomonas aeruginosa strain PA206 NODE_2_length_845090_cov_23.665650, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 735243 29 100.0 32 ............................. AAAGTCTTCATTCCCGACCCGACAACCTCGGG 735182 29 100.0 32 ............................. CTGCGCTCTCGTCTGAGCGTGCGTACTCCGAA 735121 29 100.0 32 ............................. ATGCCATTCAGCCTGAAGGCCAAAAACTCGAA 735060 29 100.0 32 ............................. GACTCGCTGCCACGCTCCCACAGCACCATGGC 734999 29 100.0 32 ............................. ATGTGCTTCCAGCTCTCGTCGTCCAGCTTCCG 734938 29 100.0 32 ............................. GCATCCGTGCCTTGGTTCGGGATGGCAGGGCA 734877 29 100.0 32 ............................. GGATCGCATGGCGCACCGGTGGACGGGCCGCT 734816 29 100.0 32 ............................. ACCGCACTGGCGGCGGCGATGAGCAGGCCACA 734755 29 100.0 32 ............................. ATGAACTTCGGGTGCGTCGAGATCAACGAGCG 734694 29 100.0 32 ............................. GATACGTGTTCGGACTAGGTGGGAGCGAAGGC 734633 29 100.0 32 ............................. CCTCTAGGCACCGTCGTGGCGAGCGGTCGAAA 734572 29 100.0 32 ............................. TGAACGCCAACGAGAAGCGCTTTGCGCTGCGA C [734563] 734510 29 100.0 32 ............................. TACTGTCCGCGCTGGCGGACCTGCCCTTACCA 734449 29 96.6 32 ..............A.............. AACGCGGCGCGCGAACGCCCATCTTCCAGAAG 734388 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 734327 28 79.3 0 A..........A..C.....-..A....T | C [734318] ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.8 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGGTGAGGTGGTGGGTCGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATTCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCGGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGACCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTTCGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTCCAGGGCATGGAGTTTCCAACCAACCCGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAACAACTGACGGCGCGGCGTTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTTGAAGAAGGCTTCCAGCCCCCCCTGTGGCGGAAGGAAACAGATTGTGAACGGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCGCCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCAGGTCCATATCCCTCCTGCGGTCCTTCGCTTGCTAAACGGGGGTGAGCAGGCGTATCCCTCGCAGGCTGCTCCTTGACGAGCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26484-26096 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOAJ01000012.1 Pseudomonas aeruginosa strain PA206 NODE_12_length_217669_cov_26.595457, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26483 28 100.0 32 ............................ AGCTGGACACGCCGGGAATGGGCCGCGCCATC 26423 28 100.0 32 ............................ ACCGAGGCGGTCTGGCGGACGTTGCGAATCCT 26363 28 100.0 32 ............................ ACGTAGAAGATGGCCGGAATGCCGCCCTTGGT 26303 28 100.0 32 ............................ AAGGTGCAATCGCTTCAGGAAGCGTTCAACGC 26243 28 100.0 32 ............................ TCGGGGCTATGCCCATGTCTCTGTCGTGATGT 26183 28 100.0 32 ............................ TGGAACGACGGCAAGGTGACGGCGCACCACGG 26123 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGCGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTTGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCAGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCATTTTTCAGACGATTTCTTACGCCCTTATAAATCAGCAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCAAGAAAGAACAGAATGGCCAGCCTGCGCCGTTTATTGCCGTGTAGTCCCGTAGAGCGAATACCGCCACAGGCGATATCCGCCGATACCCCGGATACGCGGCGGATAACCGCAGGCGGTTATTCGCCCTACGGATCAGGGCTTCGGCATATGGAGGTCAGGCCTGCACGAAGTCATGCCTGACCTCCAAGTGACAGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGCGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAGGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGGACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACGAAAAACAGCTTGACCAGCAACCATGAAGCCCGCTCGAACATCCCTTAGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //