Array 1 5577-6702 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQS01000045.1 Salmonella enterica subsp. enterica serovar Braenderup strain 100 NODE_45_length_13998_cov_11.3165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5577 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 5638 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 5699 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 5760 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 5821 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 5882 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 5943 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 6004 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 6065 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 6126 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 6187 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 6248 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 6309 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 6370 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 6431 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 6492 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 6553 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 6614 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 6675 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8848-10954 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQS01000031.1 Salmonella enterica subsp. enterica serovar Braenderup strain 100 NODE_31_length_41605_cov_10.4068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8848 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 8909 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 8970 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 9031 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 9093 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 9154 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 9215 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 9276 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 9337 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 9398 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 9459 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 9520 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 9581 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 9642 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 9703 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 9764 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 9826 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 9887 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 9949 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 10010 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 10071 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 10132 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 10193 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 10254 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 10315 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 10376 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 10437 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 10498 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 10559 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 10620 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 10681 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 10742 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 10803 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 10864 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 10925 29 89.7 0 A...........TC............... | A [10951] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //