Array 1 228630-228866 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018291.1 Calothrix sp. NIES-4105 plasmid plasmid1 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 228630 25 100.0 47 ......................... TATAATTCTGGGCGAAGTATACTTCCTTTCTGAGACTTTCAACCCAC 228702 25 100.0 47 ......................... ACTGAAAAATCATAGTCCCGTTTCCAGCACTTCAAGCTTTCAACCCA 228774 25 100.0 44 ......................... TATGACAGGTTAAGGTTAGACCCGCCTGACCAAGAACTTTCAAC 228843 24 84.0 0 ...-CC...A............... | ========== ====== ====== ====== ========================= =============================================== ================== 4 25 96.0 46 CCATAGCTGGAATGGTTATTGAAAC # Left flank : AACTCGACTTGTTTAATAGCTTTGACGGGGATGCTGAGGGGTTAGTCGGCTAAAATCCAGAAGAATCCGTATCCATATTTTAATGAAATTGGAAACGGTATTTCAATTTGATGTTGAAGGTATTCTTGGTCAGGCGGGTCTAGCCATAATCTGTCGTACTCCGCGTATATTTTAATTAATTGTAGAGGGACAAGCTAAATGACCGTGGAGACAATTTATTTGTCAAAATGCAGAGAGACAATTTACTTGTAAATTTTACCCAAATAACCATCAAAGCGATAAAAAAACATATTAACTTTCGCTTAACTGTTGAATAATAATCATTCTTTCAATATATTGCTTGCTAAAATAACTGAATATCAATAATTTTGCAATACATCTCAATTTTCAAGAGTCCTATGCTCTTTTCAACTTTCCGGAGCCACATTGATTTTGAACTACTGTCGAAACAGTTATTCTTTCATATACAAAATAGCTGCATCCCAAAAATTTCAAACCAC # Right flank : CTCCGCCAATCCAGAACCTTATCAGTAAAGCTTTTTCTAATACAAATTTGGTGCCGCCCTAAAAAAGCATCTTCATTATAAATGAAAAAATTAAATTAATTGACAAGCTTGTACTTGAATCAGTTACCATATAAGGATTTTAATATTTTGGCGGGATTCCAGTGATTTTACCTCCGCTTCGATACGCCAAAAAAAATATTTGGAGGGTTCCCCCGACGAAGGGGGTGATTCAGTAGCCACCACTGAGGTAGTCCTCACCGTTATGCAATTATGCAACGGTTCAAGCTTTTCAGCTATACTCTTTTTTGCTGGGAGCGCACCTATCCCTCTTTTCCGATTCCTAAATATAAGCATTCTTCTTTGTTATCAAAACATAGAAGTATGTTGGTTATCCTAAGACAGAAAAGAAGATGTATCCTGTCTGAACTAGCCAGACAGCAGCTTCAAGAGCGGGCAGCTACCAGGGTCCAGAAAGCAAAACGGTTTTCAACCCGTTAAAC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCATAGCTGGAATGGTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 331498-332215 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018292.1 Calothrix sp. NIES-4105 plasmid plasmid2 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 331498 36 97.2 43 ................T................... GACATCAGAAGCCGCATTTCTTGCGTCTTCGAGGTTGTCTTTG 331577 36 100.0 36 .................................... CTCACAAACTGCTCTAGACAAATCACAACCAAGCAG 331649 36 100.0 40 .................................... GAAAGATGCCACGCTATCAAACCACAAATATAGAGTGAGG 331725 36 100.0 44 .................................... GGCCAGCAGCAATCGAACAGGCGGGTAGTTCCCGATCCAGCCCG 331805 36 100.0 39 .................................... CATCCACCGCAACCGTCGTCGGGAACTGGGTCAGCCTGG 331880 36 100.0 36 .................................... GTGATTCTGGACTTCCGGTCGAGGCAGACGTACCGA 331952 36 100.0 44 .................................... GACAATAATCCAAAGCGCTGCCTCGATCAGTGAGTACTCGCCGA 332032 36 100.0 36 .................................... CAGGTTCATTTCGACTTCTACAGCCCTTCCTCCCAG 332104 36 100.0 41 .................................... CCTGCTCCCTTTTTGTAGGTGTCGCGCTTGATGTTGTGGAG 332181 35 80.6 0 .T.....A.......-..............TACT.. | ========== ====== ====== ====== ==================================== ============================================ ================== 10 36 97.8 40 TCACATTCTTTACTTACCCCTCACGGGGACGGAAAC # Left flank : GTCCCGGTGGTAGTGGTACAGCTTCTTTTACCAACCTTGTAGATATTTCTAGCACCGCTGGTCAAGCTATCGCTGTTAAATAATATAGTCTCTCTAAACCACACTTCTAGCATAAGGCGCTCTAATTCAAGGCGCCTTTTTAGTTGGTGCCTATGTTTTGTTTTATTACACGGGCAAAAGTGGCGCCTGTTTCTTTATGACGTTGGAAGTCTTGTTATATATACAGTGTGTTGATTGTTAAGGAATGTAAAACTGGCGCCGGAATTAGCGCAACGAGTATATAAGACTATTTCAATGATAATCAAAAATAAAACGAGATAATATAGGTTAATTGGGCTAACTTCTGAGTAAAATAATTTTAAATAGCTAAATATAGCATTAATTTGCTTATTTACTTATACAAGAAAGTGTAATAAGCTTTTGATACATCAGCTTTGTCAGTAGACTGGCGCAACCGCACTTTGAAAACTGAATATAGTAAGGCTTTTAGGAAGGTAGGG # Right flank : CCAATACGTCTTACAGGCGCCACAATAATCTGCACATCCAAACAGGCACCATAATCCAAGTATCTAGATACCTAAATATTTACTTAATGCAACAGCAATATACTGTCCTAACTTTACAGGTACAGCGTTACCAACAACTTGCTCTAAATTAGTCTTAGTTTAATTCTCAATATCAAAATCAAAACCCTTGGGAAACGTTTGTATATAACTCCTCTCAATCGCAGTCAGCGCGCGCACTTTTCTAAAATGCCAACAAGCATCATTCTTGTGAGGGGTGTAGTTCTTAGATATCGGTCTATTTGTCCCACAAATGGTTGGACTAGGTTCATCGATGCTAAATATTGCTTTCCGCTGGTAACTGCGCGCGTGTCTATAATAAAACTCTACGCGTAGAGAAAATTTACATTTTTAAAACGATAGGCGTTTAGATAGAGATAAAGTTGCAAGAACGTTTCAAGCACCCGCAAGACTTTTTACCCCTAGATACAACATCTGCTATA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACATTCTTTACTTACCCCTCACGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 3747394-3749085 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018290.1 Calothrix sp. NIES-4105 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3747394 37 100.0 34 ..................................... AAACAATGATTGTACTTAAAGGCAAAGTCGTTAT 3747465 37 100.0 33 ..................................... TGAAGCTTATCTCTCTAATGGTAAGCAACTTAT 3747535 37 100.0 37 ..................................... AACAAAATCATAGCGAATGGTGAGGAGTGGACAAAAG 3747609 37 100.0 34 ..................................... TTGATTGGGTAAGCGCTGGGCGTGACTATTAAAC 3747680 37 100.0 37 ..................................... TTTGTAAAATATGCTTTTGATTTTTCATTAACAATCA 3747754 37 100.0 33 ..................................... TTTAATATCGTACACCTGACTCGCACAAGTTGC 3747824 37 100.0 33 ..................................... AGTAGTAAATGAATTACAAACTACTTTTTTCAA 3747894 37 100.0 33 ..................................... CAAAATCTTTGCAGCTACTTCGTTTTTAAGTCT 3747964 37 100.0 34 ..................................... TTGCTTTCTGACCCTGGTAGCTGCCCACCTTGAA 3748035 37 100.0 38 ..................................... AGCCAGAGCTAAATCGTTACTAGCTTTATCAATTGCAA 3748110 37 100.0 36 ..................................... AAGGATTGCAACCTTAACAAATAATCCCTTTGCGTG 3748183 37 100.0 34 ..................................... AATTCCTAAGTTTAATTCAATATCACAGCAATAG 3748254 37 100.0 35 ..................................... TTTTGATAATGACTCTATTAATATACGTTCTTTTG 3748326 37 100.0 33 ..................................... AAGATTATTGGCTGCTGCCGAAAAAGCGGAAGC 3748396 37 100.0 35 ..................................... AAGCTTTGCGACTTCATAACGCGCGCTTCTGTCAC 3748468 37 100.0 36 ..................................... CAGAAAATTCAAAATCACGGCGTTTTAATTTTTGAC 3748541 37 100.0 34 ..................................... TTCTAAATGCTACTGCAATGGCAAAAGCTTGTGA 3748612 37 100.0 34 ..................................... TATGCTATTAACCATGAGAATGGTGGAGTACTGG 3748683 37 100.0 34 ..................................... TTGTATCGTATTTGCAGGCGCCAAAGCTCAGGGT 3748754 37 100.0 34 ..................................... ATAAGTGTTTCCAGCAACTAACTGAGATTTGTTA 3748825 37 100.0 39 ..................................... TTAACTGATTTCTTCCAAGCCACATACTCTTTAGTGTTG 3748901 37 100.0 34 ..................................... GTGCCTTTGTAATTATCTTATCTGGTTGATTTTT 3748972 37 100.0 40 ..................................... AGTAACCTTCGTTGGGCACAAAAAATATATGATTTATTGA 3749049 37 83.8 0 ..C.T.....C............GT...........A | ========== ====== ====== ====== ===================================== ======================================== ================== 24 37 99.3 35 ATTGCAATTTAAAATAATCCCTAACAGGGATTGAAAC # Left flank : TATGAGCTTATTGAGTCAGATGTATAATTACTGCTGATAATTACAACATTGCTCTTGGAACTGTATACTTAGACATCCCTGCCCGTTATATATTTAGAGCATCACACTTGGAGTTTATTTGGCAACTAGTACTCACTCTAACTTTATTGGCGCCGTATCGAGTACTCATTATGCTAAACTACGAGCGCGTATCGGTGGTGAAATGCCACGGGATAATACAATCTTCTTTGCTTGATATTTGCTAGCTAGTTGCGCCAACCTGTGGGTGTTGAAAAAAGTATGCTAAATTCAACGGCTGAATTATTTACCCTGTCTTAGTTTCAGCTATTTTTTCTCAACTTAAGGTTGGCGCAACTCTTGAAAACTGCTCTAAATATAGCTTTGAGCTATTTTTGGCTCAGATCACTATTGACAGACAATCGGCTGAAATTGTATTTTAAGATTAGTTGGCGCAACTGAACCTTGAAAACCGAATATGGTAATGCTTCTACTGTGAGCCA # Right flank : ATAAAGTAGTTGGAACGGCTACTGGTTTTGAAGATGTTGCTCAACAATAACTCGCCATGCTTCGGTTGGTTCGCTAATTGTTTGTAGTACTTGCTGACGCATCGGCGCCTCAAGCCCACACGTTTAGCTAACCACCTTACTTATGGATATGACTATATAGACGATAATAGAGTGTTTAAAGCAATTAAATTAACTTTCCAACAATACTCACTTTATGTGCAGCAAATAAACGCTTACCTCGTTTGCTGGAAGCATACTAAAAACTGCCACCATTAGTGGCAGAAATTTGTAGCGGTTATAATTATTACAAGTACAAAATCTTAATTACGATGATTCGGTTTGAATATTAGTCTCTGTATTTTCTAAATGGTATTTAAATAAACCATCTTGTGGAAATCTAATTCCAGCCCATTATATATTTAGGGCACCTTGCCCGTTCAGTACACAGAATATCACACTAATAGTTTATTTATAAATTAGTACTTACTTTAACTATATTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTAAAATAATCCCTAACAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 3760864-3764482 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018290.1 Calothrix sp. NIES-4105 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3760864 37 100.0 33 ..................................... CAGAGTTGTCTCAAATTTTAGGAAATTTCAAAT 3760934 37 100.0 36 ..................................... CAATTTTTCCATTCGTTGACACACGGCTATTATCAG 3761007 37 100.0 35 ..................................... CGGGTATCCCAGGTTTACCCAAAGCTTCTATAGCT 3761079 37 100.0 35 ..................................... AAACCAACACTAGCTAAGTCAGCTTTTGAAATTAT 3761151 37 100.0 34 ..................................... TTACATCAACAACGCCAGGAACAACGCCAGGAAC 3761222 37 100.0 35 ..................................... ATTTATAATATTGCACCTCGCACGCGCGGGGTTTT 3761294 37 100.0 36 ..................................... AATTGGATAGCCCCTAAATCGGATAAGTCTATCGTT 3761367 37 100.0 34 ..................................... GCTTAAGCAGAGTAATAGGGATTTAATTCAAAAG 3761438 37 100.0 35 ..................................... TCACCAGAAATAGAATGTAGCTAGTCATGGATTTA 3761510 37 100.0 36 ..................................... AGATAATGTTTCTTCTTCTGAATCTGATGTGTTAGA 3761583 37 100.0 36 ..................................... AACATCATTGGATAGAAGCACGCGTCTGGATAAGAT 3761656 37 100.0 34 ..................................... CTAAATTTGTTGTGCGCGGCGCGTACAATGCTTC 3761727 37 100.0 35 ..................................... ATGAGGTGGTATGATGTTGAGCGACCAGCATGGAT 3761799 37 100.0 33 ..................................... ATATATGAGATAGTTGACGCTGTAATTGAGTGG 3761869 37 100.0 37 ..................................... CCTCCACCTTTGCTTTAAGTTCGGCAATACGCTTATC 3761943 37 100.0 34 ..................................... ATTAGTGCTGATGTAGATGCTAATCTTGAAAAAG 3762014 37 100.0 36 ..................................... GCGGTTTGATACAGATGCTTTTGCCAAGTCATCAAT 3762087 37 100.0 34 ..................................... ATCAACGTGCGGTAACTCGTCAGCTTTGTTTAAA 3762158 37 100.0 34 ..................................... TGGGAAAAGCTAACAATAGCGACTCGGGTGGTTA 3762229 37 100.0 34 ..................................... AACATTACTATATATATAAAAGACTACTTGATAT 3762300 37 100.0 37 ..................................... GCTTCGTACTGCGATTATTCAGCAAGGTTATGTAAAT 3762374 37 100.0 35 ..................................... AGTAGAAAGTGACAAAGTACGCGCGGAGGCTCTTA 3762446 37 100.0 34 ..................................... TTGACTCGTCAATTACAGGCATAGGCGCACTTCG 3762517 37 100.0 33 ..................................... CGACTTGATAAAATTGATAGAATAGAAAATCGA 3762587 37 100.0 35 ..................................... TCTTCACCATTTGGGCCACGTTCAAGCCCTGGAGG 3762659 37 100.0 35 ..................................... TCCCTACTTTTGCATTTAGAGGTACTAATAATACG 3762731 37 100.0 34 ..................................... GAGCATCACTGAAAACATCAACGAGATTAAAAAA 3762802 37 100.0 39 ..................................... ATCCATAATTTACCCATTGAAAGATAGGGGTGATTAAAG 3762878 37 100.0 33 ..................................... CAGGGGTGATATAGAAAATATCTGCACGAGTGC 3762948 37 100.0 33 ..................................... TGGACAATACAACGAATTAAATTTTGGGGGATT 3763018 37 100.0 34 ..................................... GGAGATTGATTGTTCGTATTACTAAACCCTTCTA 3763089 37 100.0 37 ..................................... AACTTTGTAGCGGCGCCCGTCCGATACATAGCGAATA 3763163 37 100.0 33 ..................................... AAGATGCTTCGAGAGAAACTGAACGACATTTTG 3763233 37 100.0 33 ..................................... AGAACATCCTTACTCATACAACAGGCGCCACAG 3763303 37 100.0 35 ..................................... CAACTGTGATGCTTAATTGGGACATGCCTGTACTG 3763375 37 100.0 33 ..................................... GTTTATGATTCACGCAAAGTTGGTGGTGGTGAA 3763445 37 100.0 36 ..................................... AGTATTTCCATAGTGCAAAGGCTGCCAGCATACAAA 3763518 37 100.0 34 ..................................... AAAAAAGGAGAGTTGTCGGCTTTTTGGATATCTC 3763589 37 100.0 33 ..................................... TTTTGAGCGCATTGTTTCTATTGCTCAGGAATA 3763659 37 100.0 35 ..................................... CCAGATAACCAGCACTTTAGATTCGTTTGTAATGG 3763731 37 100.0 34 ..................................... CCAGGTTACAAGAAATCAAAAAGTTATCAAATTA 3763802 37 100.0 35 ..................................... AGAGATGGTGGAGTAAAAGAAATATACTATGGTAA 3763874 37 100.0 33 ..................................... AGCAAGTAACCCCGCGCATAGGGCACGGTTGCG 3763944 37 100.0 37 ..................................... AAGATTTAGAGCGGATATCACAGGAGAGCAATCAGGT 3764018 37 100.0 35 ..................................... TACGAACGCTCCGAGAGCGCGTATTTTTCCGGTGG 3764090 37 100.0 35 ..................................... ACGCAGGTAAAACACAATGCGTAGTAATAAATGAT 3764162 37 100.0 34 ..................................... CTAAGAATTGTTGAGTATCGCTATGCAAATATTT 3764233 37 100.0 38 ..................................... CTAGCTACTATTGGAGTAGCAAGTATTAATAATGATAA 3764308 37 100.0 37 ..................................... ATCTTCAAAGGCTATTTCAGCATAACGAACTGTGTAG 3764382 37 94.6 28 .......................T............G GGAAATTGGCTGGAGTCACTATATAGCC 3764447 36 81.1 0 ..........-T..........TAA.......T...G | ========== ====== ====== ====== ===================================== ======================================= ================== 51 37 99.5 35 ATTGCAATTTCAAATAATCCCTACCAGGGATTGAAAC # Left flank : AGGCGCCGTACTAAAATCCATAAAATTCTAAAGTCTTATGGACAGTGGATGCAGTATTCTGTTTTTGAGTGCGATTTGACCGACACTCAGTATGCTAAACTACGAGCGCGTCTCTCCAAAGTGATCAAACCAAAGGAAGATAGCATTCGTTTTTATACCCTCTGTGCTTGCTGCCAACCAAAAGTTGAGCGTATTGGTGGTGAAATGCCACGGGATAATACAATCTTTTTTGCTTGATACTTGCTAGCTAGTTGCGCCAACCCGTGGGTGTTGAAAAAAGTATGCTAAATTCAGCGGCTGAATTATTTACCTTGTCTAGGTTTCAGCGATTTTTCCCCAACTTGAGGTTGGCGCAACTCTTGAAAACTCCTCTATATATAGGTTTGAGCTATTTTCACTCAGATCACTATTGACAGCCAATCGGCTGAAATTGTATTTTTAGATCAGTTAGCGCAACTGAACCTTGAAAACCAAATACGGTAATGCTTCTACTGCGAGCC # Right flank : GCAGGGAATAAGGCTAATTTTTAGTCCTGCTTTCAGCAACATATTTTTATGGTAAATAAAACACCAACAGTTGCAGAATTGAGAGAACTTTCTTTGCGACTTCCAGAGAACATTCCGTATGTTAAAATGCTAGTTTTATTCGGTTCGAGAGCTAGAGGTGATATTCATGCTAATAGTGATTGGGATTTTGCTGTAATTTGTGATGAGAACCAACGTTTAGATTATGTAAAGGATAATCCTTTTTTGTGGTTTGAGCTACCTGCAAAAGTTGGCGAGATTCTCCAAATCAATAGCGATATTATAGATGTGGTAGAACTTGATCATTGTTCGCCATTGATGGGTTATCATGTAGCCCGTGATGCTAAGGTTTTATATGAAAGTAAACCAGAGAGTTTTCTTAGATTTCAATGCAAAGCCTGGAAGATTTATGCTGATACAGCAAAATTCCGCAAAGCTGAAAGAGAATCTATAAAACTCTGGTTGAATAAAAGAGGGTTATA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAAATAATCCCTACCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 3 5412679-5413087 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018290.1 Calothrix sp. NIES-4105 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5412679 37 100.0 38 ..................................... ACTTAACTACCATTACTTTAGAACCAGCAGATGATAGT 5412754 37 100.0 36 ..................................... CAGCAACCTCCCTCGCCACTTCCAAAGGCGCCTTCT 5412827 37 100.0 36 ..................................... GATATTTTATAAATTGATATTTCTTACTCGTATTAT 5412900 37 100.0 37 ..................................... GAACTACCATCCATCTGATAAGGTTTAAATTTATCAG 5412974 37 100.0 41 ..................................... CCTGCATCATATGTATCCCACGTCAACCAATTATGCTTGGG 5413052 36 75.7 0 .........................-.CA..AAGCCA | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 96.0 38 CTTGAAACCTTACGAATCCCGTCTTCGGGACTGAAAC # Left flank : AAAGCTTCGCACTATAGAACTACATCCAGAAGCACAGAAAGCAATAGCTCAAAGTTGGCGAAGCATGATAAAATTTTTACCTCAAACCTTACCCTTATCACAACCAAATTTAAAACGTAACCTCTACCCGCTCAAAGAACTCGACTTAAACAAATTTGCAAACGACGAAGTAGAATACTTCCAACTATATCTATTAATAGTCAGGGCACTGCGCCTATGCGACCAAAGGGCTGTACAATTGTTACATTAATCTAGACAAAAACAACAACTCGCCTTATTATTAAACAATCAGCTTGATGTTTCGTAAACCGAAGCGAGGTCAAAAACCCTAGGGGTTTCACGAAATTGCCTATAACCTAGACAAGATAATAATCACAGCATTTACAGCTTTGCAATAACTGCAAATAACTCTCAACAAGCGCGGCTGAAATCGACTCAATTTAGGCACTTACGAAAATCCTTTCTGGAATCCTTACTCTGTAACCTTCGTAGCGCGCGGC # Right flank : ATTTTATTGGTGATTGGTCAGACCCTTTGTGTAAATACTCAGACGCAGCAATGCACAAAAGTTGTTTTCTTAATTGGGATATGCGAGAAACATTTATTGCTAGATATAATGAAGTGATGAAATCGTATAGAGCAGAAGATTGGGAAGTTAGAACTTATCTATATATGATGCCTGATGGTAGTATTGAACAACGAAAACACGCGGTTTAAATAGAAGTTAAACAGCGTAGCAAGTCAAAAATAAAACTATTGTTGAGTACGCACTGTGAGGTCAAATAAACCAATTAGTGTAGCAACATATCAAGTTGTTTAAACTGTACCGCAAGAACTGCAAAATCAACTTCCCTCTTCTGAACAGGTATCAAAACTACTTGGAAGTATAAAGTAGAAATATCCGTGTATATAACTTAGGAGTTAGGAGTCAAATCGCGTTTTACAGCTTCGCAAATAATCCTTCGTAAATACTTAACTCGCTCCTCCGGCACCAGTGCGTGCAGGGTA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACCTTACGAATCCCGTCTTCGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 5423169-5421971 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018290.1 Calothrix sp. NIES-4105 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 5423168 37 100.0 34 ..................................... GTGCAGAGCCGTACTTTGTAAACTACAGATAACA 5423097 37 100.0 36 ..................................... TTATTTGCTTTTGATGATTGGGCTATCGGCAATCAG 5423024 37 100.0 36 ..................................... AAATGGCATCGGTATATGGAATTATCTGTTTGGAAG 5422951 37 100.0 35 ..................................... CCAATTACAGTTCCGCTTTGCAAGGTTAAAATACG 5422879 37 100.0 35 ..................................... GCGAGCGTCTAGGGGCGATGTAGAAGCTGGGAAAC 5422807 37 100.0 35 ..................................... CCACGATGATAATAGTGGTTAATCGGGCTTTGTAT 5422735 37 100.0 35 ..................................... TTGGAACCTCTTACTAAGTTTGACCTTCAGTTAGA 5422663 37 100.0 36 ..................................... CAGGTTTAGTATTATCAATCGGTTGCCAATCAAAAC 5422590 37 100.0 35 ..................................... CTAGATAAGTCTAGTGATTGGGTATTAGTAGATGA 5422518 37 100.0 35 ..................................... TGCGCGATTACTCCACCTGCACTAGCTTGTAATCT 5422446 37 100.0 36 ..................................... TGACTGTAAGTTTTGGCGGGCCAGATGCGTAAGTAC 5422373 37 100.0 38 ..................................... CCATGTGATAGTATAGTTGCCTAAAAGTTAAGTGTTAT 5422298 37 100.0 35 ..................................... TTTTATCGATAGTGTTTTTCCTTGCATCGTTTGAT 5422226 37 100.0 36 ..................................... AAGGTGGAGACAAGCTTGATGAACAAGGCACGTGGG 5422153 37 100.0 36 ..................................... TCCACTGTTAAAATTGGTGCAGGATATTTTTGGGGA 5422080 37 100.0 36 ..................................... GTAAGTGTCGTCAATGCGGCTTGCACCGCAATAGAA 5422007 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 17 37 100.0 36 GTTTCAGTCCCGATAACGGGATTCGTAAAGTTTAAAG # Left flank : TCAGCTACCACTTTAACTGCATTTTTGGTAACTTCGATATCTACATCTTTAGCTTCAATACCAGGCAATTCTAATTTTAGGTGTACTGCTTCCGAGGTTTCATGCAGTTCCGCAACAGGAGTTCTAAATGTCGGCGCCTGAAGTTCTTGAAACAAAGAATCTAATTGGCTTGTAATTGCGTTCATTTCATTCCAGGGATTGTAACATAATAACATTTTGCGTTGCTCCTTTCTGCTTGTGTATTAATTAATTAGTTTGGTATATCGTTTCGTATGTCTTTATAGTAATGAAGTTTAAAATGCTTGGAAATAGGGTTAATATTACTTTTATATTAATGAAAACCGACCGTTATTAATAGGATAATTAGGAGTCGTGTAAATACGAAAAATATAAGTACGGTAAACCTAACACGTAATGTATTTCTAATATGGCGCCTTGCGATATCAGGATTCGTAAGTTTTAAAGCCAGCAGCACATCCCAGTTCAGGAATTAGAGTAAT # Right flank : ATCGCGCGCTGAAACCCTTACAGGGTAAGCACTGCACAGAGGGTTTTCGTGAAACCTAAATTTGGCTTTATTTCAGCCGTGCTTATTGAGACTAATTAGCACTTGTCTCAATATTGAAAATGCTCAAACTATTATATTGTCAAGGTTCTGGCGTTTTTCGTGAAACCCCTAGGGTTTTTGCCCTCGCTTCGATTTACGAAACGTCAAGCTGATAGCTTAATCATAAAACGATTACTTGTTCTTGTCTAGGTTTTTCTGAGCCATAGGTAATGGTTCGCTTTACAGACCCAGCGTCCAATACATATACTCGCACGGAGTCTTCATCGGGCTTGATTAATTTTTCTACTTTTATTTGTAGCTGAGTAAATTTTACCGCAGTTAAGAAGCACTCGAATACGCTGTATTGTGTCCATGTTCCATAACCAGTGAGCATTTTATGCAAGCGAGTCCGGCGCCTATTAGCTGCTTTGTTATCTGGTAAGTCGTAAATAATTAGATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGATAACGGGATTCGTAAAGTTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 5 5743122-5740344 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018290.1 Calothrix sp. NIES-4105 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 5743121 37 97.3 32 ....................................G AGCAGTCTTCATTGACTTCGAGAAGGCGAATT 5743052 37 100.0 34 ..................................... ATGGATTGCACACAATTAGCACTATTTACGGTCG 5742981 37 100.0 34 ..................................... ATCGTGCGTAACTCACTAGTAAAGGTATAGATGT 5742910 37 100.0 35 ..................................... TTTATGACAACATCCATCATTAAACCGATAACCGA 5742838 37 100.0 34 ..................................... CCAACCACTTTACCAATAAACGAAGATGGTGTAA 5742767 37 100.0 34 ..................................... TTGCAGCAAAGCAAGTTTTTCAACCTTTAACCAG 5742696 37 100.0 36 ..................................... TTCTCGGCAGCATTATCATCATTCATAACATCTTTA 5742623 37 100.0 38 ..................................... GCACTTGATGACCTCTAGATGAGTTCCCAATCGGTACA 5742548 37 100.0 46 ..................................... TCCCGTTATCTCAAGAGGAGAGCGATATAAAGGAATCTCTGGGAAA 5742465 37 100.0 40 ..................................... ATTTAAGCTAGAGATATTTGATGCCCTTGACGCGCTAGGT 5742388 37 100.0 33 ..................................... AAATAGGGTGGATGTAGCTCATTTGCTAATTTA 5742318 37 100.0 35 ..................................... GCATCTACGCGAGCATGAAATAATCATTGAACAAG 5742246 37 100.0 34 ..................................... TAGCCACTAATATCACCAACGTAGGTCAGATTGA 5742175 37 100.0 34 ..................................... TTACCAAATCCCACCAAGCATCTAAATCAATTTT 5742104 37 100.0 36 ..................................... GGAATTATTTTATTGCAACAGTGGATGGAATACTTC 5742031 37 100.0 35 ..................................... ATTAATGATAAGAGGTATAAAATTGGGTTTAAGCA 5741959 37 100.0 34 ..................................... AGCGAACAGCCTAACGTGGGAACACTATACTAAA 5741888 37 100.0 34 ..................................... TACATAAATCCTGCCACTGCTGTAAGCTGCACTC 5741817 37 100.0 34 ..................................... TTGGGCGAAATGTGTTTTAGAATGTCCGCACTCA 5741746 37 100.0 34 ..................................... AAGAGCGTGCAGTTCGAGTAACGAATTATGGTAC 5741675 37 100.0 34 ..................................... TGAAAAAGCTGAATCAATAGACGAACTAATTCGA 5741604 37 100.0 35 ..................................... CTAAGTTCATAAACCTCTATCTCCATATAAATCAT 5741532 37 100.0 37 ..................................... TTCTGATGCAGCAATCCTTGGTGATTTGGTAAAGAAC 5741458 37 100.0 33 ..................................... TTTTTCCCCACTTTCAAATGAAGAATTAAAAAC 5741388 37 100.0 35 ..................................... CTTCCTGCTGCATACCATACTTAATACTAAGTTCT 5741316 37 100.0 36 ..................................... AACCTTATATCCTTGTTATGCTCTTAATCCTGATTC 5741243 37 100.0 37 ..................................... CACTCTGTAACAGGAGTGGATTTTTTTACTGTGAAGA 5741169 37 100.0 34 ..................................... GAAACTCCCGAACAGTTCATGATATTAGTTTTAG 5741098 37 100.0 34 ..................................... AGCAGAACCAATACTATCATGAAAAGCTTTTTGT 5741027 37 100.0 36 ..................................... GATTAGCCTCCGCTTCTGTCGCTGGCACAGTGGCAT 5740954 37 100.0 33 ..................................... TTAATTTCAATCAAAGCAGGAACCAGTGCTTGC 5740884 37 97.3 35 ............................A........ TGGCTACTATGCTTAGAGGATTTTCAGCCAATGTA 5740812 37 100.0 36 ..................................... ACCAGCTACCCATGAAATACATGCAGCAGTTGGCGC 5740739 37 100.0 34 ..................................... CCCACGGTAGTAATCTACCACGACGCCCTAACAT 5740668 37 100.0 35 ..................................... TCCTACTCTGATTGGGACAAGGGGTATCAGTTCAA 5740596 37 100.0 34 ..................................... AGACATTTTAGGTGATACCGCAACTCGTAATCGC 5740525 37 100.0 35 ..................................... TTTTCTTGTGGTATGAATGCTGCTCGCTTTTTAGA 5740453 37 100.0 36 ..................................... ATGGCTTTATATCAACGTGGAAGCGCTCTTACTCCT 5740380 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 39 37 99.9 35 ATTGAAATTTAAAATAATCCCTTTAAGGGATTGAAAC # Left flank : AAACAGGTGAAGGAAATCGTACAACGAACCGTGATTGTGCGTGGGTCTAGGAGTCCAGATTTTCCGAGATTTTTTGAACCGGCAAGTAACATATAAAATCATAGGAGAGGTTGAACCAGAAGTCATCAAACAAGTAAACGCAATAGCTGATTTTGCGCTATACGCAGGAGTCGGAAGAAAAACACCAATGGGAATGGGAATGGTACGCAGGCAAACAAATTAGATAGCATTTACCTAATTTTTCCTATATGACCGCGAACCTACTGGTGTTTTTTTCACGTCACGTCAATTTATCCTCGAAACGCCTATCCAGTCAAGCTTTGAAGAATTTGGCGCCTGACAGAGGTTCGCGGTAACTCTGAAACCCCTATCAATTAACCATTCCAGCAATTTTAGCCTATGCTCATATTGACACCTCAACATCTGAAACGCTATTATTACTCTAAGTTCGCGGTACAGAACCTTGAAAACCAAATACAGCAAAGCTTCCACATTGAGCC # Right flank : TTATTAATAAAGCTGGTATTACAAATAATAACGCGCGCTGGTGCCAAAGCGTGAACGTTTAGAACTTTCGTTTATGGGAGTATAATATTCCTGAAATTAGGAAGTTCTTGCTTAAATTCCAACTAACATCGGCGAGTAAAGTGTTAGCGATTGAATTTGGGAGAATATCACCAAAATAGTTGACTAAACCAAGCGATACGTTACCAAGATTTGCTCTGGCGCCTAATGTAATTGAACTACCCGGTGATTTTACTACAAATTGGTCAATTTCTGCTTTACGGTCAATGGCATAGTTCAATCCTGTTGATAAGACAAGATTAGAATTTTTCCCTAAGCTGATTTTCTTGGAAATGCTACCTGATACTTGACTATAGTAATCATTATCTGGATTTGTATAACCAATGGCGCCACCAGAGAAAGTCCAACCATCGTTTGTGTACCTAGTAAAGTCTGTACCAAGATAAGCGTTGATTTTATCTCCGCCAATCATACCACCCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTAAAATAATCCCTTTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 6 5752083-5747624 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018290.1 Calothrix sp. NIES-4105 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================== ================== 5752082 37 100.0 33 ..................................... CGAGAAGCTGGAGCAATATCACTACGTCCACTA 5752012 37 100.0 33 ..................................... AACTAGCGACTGTACTAAGTTGAGTGAAATTAA 5751942 37 100.0 34 ..................................... TCCAAGCTATTACGGGATAAGATGTTATTGTTGC 5751871 37 100.0 35 ..................................... TCCATCAAGGATGGCTACTGAAGTAGCTCCACATA 5751799 37 100.0 36 ..................................... TATTTTTTTAAATAATTGCTTGACAAGATGTAAGAA 5751726 37 100.0 36 ..................................... GCTTGGCTCAAACAACTGAGGTAACAAAGCAGTAAC 5751653 37 100.0 35 ..................................... CGATAGGTAAAACTGGTCCGCGCGGTGAAATTGGT 5751581 37 100.0 37 ..................................... TTCAAGCAAAATTTTTGTGTTTTTTGATATAAACAAT 5751507 37 100.0 34 ..................................... TAATGTGGTGGATTCTGACATTAAAGTTGCTGGA 5751436 37 100.0 35 ..................................... TTACGACCATAACTTTAGAGCCGCTTGCTGATAAT 5751364 37 100.0 35 ..................................... AATTTTTTACCTTGCTTGATATCTCTGGCAAGAGA 5751292 37 100.0 33 ..................................... ACATTATACCCTGCCCTATATATTCTTTGATAT 5751222 37 100.0 62 ..................................... AAGTACAACGTAGGGAAGAACAGCATGAACTAACACAATACATTAATGACATAGAAGCTCTA 5751123 37 100.0 35 ..................................... AAGTACAACGTAGGGAAGAACAGCATGATTACAGG 5751051 37 100.0 33 ..................................... TTTACCACGTTTTGAATTGACTAATGCAACCTC 5750981 37 100.0 35 ..................................... AAAGTAAGGCATTAATTACCCCTTACGTAAATTTT 5750909 37 100.0 33 ..................................... TTAATGTTAGTAAATCGCGCTTCTTTTGCAAGT 5750839 37 100.0 33 ..................................... CAACTTTTACAGGCTTATGTTTTTTCTTACCAT 5750769 37 100.0 34 ..................................... TCATGATGATTGTCAGCAAGAAAATTGAGTAAGT 5750698 37 100.0 35 ..................................... GCTTAACTAAGTACTCTAGAATCGTATCCGCTTGC 5750626 37 100.0 34 ..................................... TTTTACTGCTTGAACTGTTCGCTGTCTTGATAGC 5750555 37 100.0 36 ..................................... ACTTAAGCAGAGCAATAGGGATTTGATTCAGAAATA 5750482 37 100.0 33 ..................................... CCTATTGGGCTATCAAAGTGAATGCAGTAGTAC 5750412 37 100.0 34 ..................................... TTAGAGGCACCCGAAACAAAATACATTTTCACAG 5750341 37 100.0 35 ..................................... TTCAATCACTTTTTTGCGCGCTTGTTCCGCTTCGA 5750269 37 100.0 41 ..................................... ACTAATTCAATAGAAGGAGGCATTGACGGTAATGATGGCTC 5750191 37 100.0 35 ..................................... TTGTAAAATACATTCCAGTACTTGGCTGGTTAGTA 5750119 37 100.0 37 ..................................... TTGCTGAGGCGTTAACAAGACTCAATAATGCAGCTAA 5750045 37 100.0 36 ..................................... CCTGGCGCCACTGACTTAAAATCAAGGCAAGGACAT 5749972 37 100.0 36 ..................................... TTTATGTACATCTACAGGATAATCATGCACTTGTGA 5749899 37 100.0 35 ..................................... GCAGCTGTTTGTATGAAGTCCTTTATTAAAAATAG 5749827 37 100.0 37 ..................................... AATAGTTGCTTGCTTTTCATTGCCTAAAGCATTTGAA 5749753 37 100.0 35 ..................................... GAAAACACAATCAATCTCCCTAAATAAGTAATTAC 5749681 37 100.0 41 ..................................... ATCGCTATTATCCCATGTTTCTGCTGATTTGTACCATCCAA 5749603 37 100.0 33 ..................................... GTACATTCCAATATCATCTGCAAGTTTGGTATC 5749533 37 100.0 34 ..................................... TCGCTTTATCTTTGTGCGTTAGATAATCATCGTA 5749462 37 100.0 34 ..................................... GAGTAGGGTAGCGAGTAACTCAAGTTGCTTAATA 5749391 37 100.0 34 ..................................... GGTAGCTTGGCACTGTACACAGAGGGTGTGTTTA 5749320 37 100.0 36 ..................................... TTTTCTTGGACATGCTTAAAACAAGTTCGTACATGA 5749247 37 100.0 36 ..................................... ATGAAGTTTGGGGTAAGGAGCTAATTCTACCGATGC 5749174 37 100.0 38 ..................................... TTTGCAATTCATAGGCAACGTGCCAAGCGATATTTAGA 5749099 37 100.0 36 ..................................... GTATCTGTAAGGATTGCGCTCACCTTGGATCAAAGT 5749026 37 100.0 35 ..................................... TTAAAATTATCATCGACTCGCTATATCGTAGTTCA 5748954 37 100.0 34 ..................................... TTTGTAGCTCGTCCATACTCGCCATTTAATAGTA 5748883 37 100.0 37 ..................................... CTGTGGAGCGAAGTAGTGCAGTATTTAAATAAGTGAG 5748809 37 100.0 35 ..................................... GCTATGCGCCGACTCTCTTAAGAGTGCGTAATGTA 5748737 37 100.0 33 ..................................... TCTAAATAAATTGGTAAAGAAACTGCCAATTGA 5748667 37 100.0 33 ..................................... TGCAAACGCTTTAGTTTTTAACAATGCTGCGAG 5748597 37 100.0 38 ..................................... ATGCTGGACGCGCTGTTTTAATTGGCGCTAGTCAAGAA 5748522 37 100.0 36 ..................................... ACATTATCGGGCATGTAACTCATTTTATCGTCTATG 5748449 37 100.0 34 ..................................... TCAGAAATTAGCCTTCATAATCAAGACTCATTAT 5748378 37 100.0 35 ..................................... AAAACAGAATCTAAAACTGAAGTAGTGGCGCCACA 5748306 37 100.0 35 ..................................... TACTGGATATGATAGATTCTTCGCGCTGGGATATC 5748234 37 100.0 34 ..................................... AAGCAATTAACTTGCTCAACTGAACACTACTATA 5748163 37 100.0 34 ..................................... AGCAAATGAGGCTGAAGTAAAAATGGCTTATCGG 5748092 37 100.0 39 ..................................... AAACTCTCTTTTAACTGACTCAACTTTACCATCAACAAT 5748016 37 97.3 36 ..................T.................. TACCTTTACAGCCTATCACCCCCGCTTCAACACATT 5747943 37 97.3 34 ..................T.................. GAGATTCTTCGGACAGTTACACGTTCGCGTAAGA 5747872 37 97.3 36 ..................T.................. CAATTAGAAGTAGATTTATAGTTGAGGGCGTGGGCA 5747799 37 100.0 31 ..................................... TTCGTAGCGACCACCAAGCGCAATGCTGACT 5747731 37 100.0 34 ..................................... TGATGACGATTTTCGCACTTTACCCGACTATTAT 5747660 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================== ================== 62 37 99.9 36 GTTTAAACTTTATAAAATCCCTTTTAGGGATTGAAAC # Left flank : CTTCAAAGGTTATAGTGCTGCACGCACATTCAGGAGGCGCCACAATTACACAATCGGTCATATACTGCATAACTTTGTGAATAAACCAGACACTCATATTTAATAAGTAACCATGTTTGTAGTTATATCGTATAATGTACCCTCAGACAGGCGCCGTATAAAGATTCATAAAACTCTCAAGTCATACGGACAATGGATGCAGCACTCTGTATTTGACACAACAGTATTCTTTGCCTAATTTTTCAAACAAGACCGCGAACCACAGGGTGTTTTTGAAATGCTTGATTAATTTACGGCTAAAACGCTTACCCCATGCAGTATTGAAGCATTTCAACCACAAAGTAGGTTCGCGGTAACTGCAAAACCCTTACCAAACAATCATTCCAGCGATTTTGACACATGTTCATCTTGACATCCTAACCTCTAGAAAGCTATTCTTACTTTAGGTTCGCGGAACAGTACCTTGAAAACCAAATACAGCAAAGCTCCCACATTGAGCA # Right flank : GAATACTTCAGCCTTACAAGAAGAATTAGGTATTGGCGCCTTGACCCCTCGTCAGTAGGATAAGTTTTTGCTACTTGTCGTCGCGTATTTGGCGGGTTTGAGGCGCCCCTTGACCCCTCGTCAGTAGGATAAGTTTTTGCTACCTTTAAAATTCGGGTTTCTCGCTTTCGGCAAGGAACCCAACTGTTTAAAGGTACTACACAGTATAATTATCTATATAACAATACTATATTTACTAATCATCTTTATGAATAAACCAATCCCTGAAGAATACGGAAGTCTTTTATTAGAAGTAAAGCAACGTATTCGGTCTGCTCAATATGAAGCATTGAAAGCTGTAAATAAAGAACTTATTGCGCTTTATTGGGATATTGGCAAGATAATTGTTGGGCGCCAGCAGAGCAATAGCTGGGGAAAATCAGTTGTTGAACAGTTAGCGAAAGACTTACAAACTGAGTTTCCTGGGATTAGTGGATTCTCTGCTGCTAACCTATGGCGGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTTATAAAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 7 9210496-9211819 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018290.1 Calothrix sp. NIES-4105 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 9210496 36 100.0 36 .................................... ATTAAACATTCAAACACTCAATTTAATAATGATTTA 9210568 36 100.0 36 .................................... AATTGTTCACGAAAATTAATGAACTATTTGAAGAAG 9210640 36 100.0 35 .................................... ACTTGTTAGATATTCCCGTTAACGAAGCAGCGTAA 9210711 36 100.0 35 .................................... AATACTGCTCGCTTTTTAGATATTGACCAGCTTGC 9210782 36 100.0 37 .................................... TGAGCAAGCAGTATTATTAAGCGGCGCCTTTGTATTT 9210855 36 100.0 35 .................................... TTGTCGCATCTTTCTCACCCAATCTTGCTGTTAGT 9210926 36 100.0 35 .................................... TTAGTACTATCGGTGCTAGTGTCGGTGTCGGTGTC 9210997 36 100.0 36 .................................... TCAAGTCTAAGCGAACACCATACCGAAATCAAACAT 9211069 36 100.0 36 .................................... TAAAATCAAAGACATCGTATTAAATAATTATGTAGA 9211141 36 100.0 36 .................................... CGTAGTAATCCCAACTTGGGTCAGGTGTTGATATTG 9211213 36 100.0 35 .................................... ATGTCGCGTAACCGCTCCACATGCGGCATCAAGCC 9211284 36 100.0 36 .................................... TATTTGTTGCTGCATTGCTGGGTGTATTACTGGACT 9211356 36 100.0 36 .................................... GCGCAAATAGCCTCATCGAGCGTAAGGCAAGACCGT 9211428 36 100.0 35 .................................... CAAGAGGAACACAACAAGAATTTGAATTACAAAAC 9211499 36 100.0 36 .................................... TCCAGCCATATATGGTCCAGTTCTTGGAGGGTTAAA 9211571 36 100.0 35 .................................... GCTAGAATCTGGATGGCTGCATAGAGAAGAATATG 9211642 36 100.0 34 .................................... AATGCACCGATTACGCTTACAACAAGTCAGAATA 9211712 36 100.0 36 .................................... GCTATGCGGAACGTGGGATGGATGGTTTTACTAATT 9211784 36 86.1 0 ..................C.T.CT...........T | ========== ====== ====== ====== ==================================== ===================================== ================== 19 36 99.3 36 GTGCTGTAACCTTAGATGTCGTAAGGCGTTGAGCAG # Left flank : GTCAAAAACGATGGCGTAAAGCTTATAAACTCATAGAGGGATACGGCGAAAGAGTTCAATACTCAATATTTCGCTGTTGGTTAAGTCAACGCACGCGCGAAAAGTTACGTTGGGAATTAGAAACAATACTAGCTAGCGAGGACAACATCCTATTTATTCGTCTAAGCAACCGCTGTGTCGAAGATATCCCCAAATATAACCGCCCTGGAATATGGCAAAATCGAGACGAACCTTTTTTAATCGTCTAAAATTACAAGCACCTCTGAGTGTGAAACCAAAAAAGATACCTTTTTTACCCAGAAGACTTGTAGCAGAATAGTTTAAAGCCTTTTTAACTCTTTAGAGGTGCTTGCAAAATGCTGAAAGCCTTACCATTAGGAAATTATAGAAGTTGAATTTTTCTGTTTTTTCACATAACCAAGTGCTGTAATAGCTTTTTGCACCAGGTGCTTGTAAAATCGTCTAGGGAACTGCGCCATACAAGGATTTTGGAAGGCGCT # Right flank : TATGCTTAGTTAGAAGATTTAGTAAGCTTTTGCTCTATTTCTCTTTCAATTTCTTCTAACTCAGCAACCTTAGCTAGTAGCTGCTGTTTTTTAGCTTTCACCTTATTTAAGTGTCTAACCCAGTTGCTACCGTCTAACAATGACTGTACTATTTCTGTGAATTCTGAATCAGATACAGGCTTACCAGCAAAGGCTATACAATCTAGCTCATCTAATTCTTTCCAATATTGAATTTGTTCTGGAGTAGGTTGTTGTAAGTTTGAATCGTTAGTTGTTGACATTTTTGTTCACTAATTTAATTAAGTATTCAAATTACTGACGGCTTGCTTGGGTTATTAAAAAATTCCTACTTGCAGTTTCTGTCAGTATGAACTCTCCTGAACCGTTTGACTCTACAAAACCAATTTTTTCATAAAATGAAAATATGTACTTAAGCGACGCGCGCGGTGTACGTCGCTTAAAACACTCTATTGAACCGCAATATTACGGCTTAAGATGCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTGTAACCTTAGATGTCGTAAGGCGTTGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //