Array 1 108159-106377 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIM01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2054 NODE_3_length_443056_cov_3.48051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108158 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 108097 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 108036 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107975 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107914 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107852 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107791 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107730 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107669 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107608 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107547 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107486 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107425 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107364 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107303 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107242 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107181 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107120 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107058 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106955 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106894 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106833 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106772 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106711 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106650 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106589 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106528 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106467 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106406 29 96.6 0 A............................ | A [106379] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125784-124291 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIM01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2054 NODE_3_length_443056_cov_3.48051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125783 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125722 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125661 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125600 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125539 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125478 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125417 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125356 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125295 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125234 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125173 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 125112 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 125051 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124990 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124929 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124868 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124806 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124745 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124684 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124623 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124562 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124501 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124440 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124379 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124318 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //