Array 1 1166167-1168509 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038020.1 Streptococcus thermophilus strain ATCC 19258 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1166167 36 100.0 30 .................................... ATATACGGACTCATCTAGTGAAACTGGGTA 1166233 36 100.0 30 .................................... GAATCTGTTAAAACATTGATTTTTTATATT 1166299 36 100.0 30 .................................... TGTGCCAGCGTCATTCAAAGCAATTGCTGA 1166365 36 100.0 30 .................................... CAAAGCTATCGAATATATCGCAGAGGCAAG 1166431 36 100.0 30 .................................... TCTTTGTGATATAAATGAAAAAAAAGACTA 1166497 36 100.0 30 .................................... CAAGCGTAAGTTTTACCGTTAGAACGTTCA 1166563 36 100.0 29 .................................... GATAGCGCCTTTGAATATTAATGGTGTTC 1166628 36 100.0 30 .................................... TAGACTTTACTAATTCTCAAGTAAATATAT 1166694 36 100.0 30 .................................... TTCTTTCAGGTATGAAATTAGAAACACTTG 1166760 36 100.0 30 .................................... TTTCACAGTCAACACATCTCCGACACGCTT 1166826 36 100.0 30 .................................... ATGAGTTGGTAGATGTTAAAGCATCAACTG 1166892 36 100.0 30 .................................... GTATATACAGAACTTGGAGTTTTAACGCCT 1166958 36 100.0 30 .................................... CATACACCACCAGCAAAGTCTTTACCAATG 1167024 36 100.0 30 .................................... GATGATTTTGAGTTTAAGGTTTTTAAACAA 1167090 36 100.0 29 .................................... AGACCATGAAGGAAGGCGTTGACAAATTC 1167155 36 100.0 30 .................................... AGAAATTCATGATAAGTGGTCTGAAACTTG 1167221 36 100.0 30 .................................... AGTCAACTTACTATGTTAAAATAAGACAGG 1167287 36 100.0 30 .................................... GACTTGAACCTGAATTAATCAAGGTAGCCA 1167353 36 100.0 30 .................................... TGTACTCTATTGATTGCTTCATCTTTATTA 1167419 36 100.0 31 .................................... CTTTCAAGATACTCATCAACCATTGATGTCA 1167486 36 100.0 30 .................................... AAAAGGTGCGTATGAAACTCATCCCAGCGG 1167552 36 100.0 30 .................................... CTATGTCTTTACTGTTCTTCCAAAACCACC 1167618 36 100.0 30 .................................... TTTGTTTGCGTTCACTTAGTTTATACTGAG 1167684 36 100.0 30 .................................... AATTTGTCATTGACATTTACCACCGTCCTG 1167750 36 100.0 29 .................................... TGGCGCAATGGTTTTAAATCATATGCCTT 1167815 36 100.0 30 .................................... CATGGCCTTGTATTTTCGAAAGAGCATAAG 1167881 36 100.0 30 .................................... TATCCTCTCGTTGATAATATGCTTAATTCT 1167947 36 100.0 30 .................................... TTGATAGACCAAAACACTTCTGTGAGCAGC 1168013 36 100.0 30 .................................... TGCCTTTCTTCAAAGAAGCTATGCTTGTTA 1168079 36 100.0 29 .................................... CTGCATCAAACGATGGCTTTGTCATCGGT 1168144 36 100.0 30 .................................... AATATAATCGACGAGTAAGAGCGAGAGACG 1168210 36 100.0 30 .................................... CGCGCACCGTTGACAAGTGTCAAGTTATCG 1168276 36 100.0 30 .................................... GATGATTTTGAGTTTAAGGTTTTTAAACAA 1168342 36 100.0 30 .................................... TCATACTAAAACTGGATAAACAATATTACA 1168408 36 100.0 30 .................................... TGACACGGCTGGCAGTGTTTCGGTTGGTGG 1168474 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTTACAAAAATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACCTGCCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1932489-1930999 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038020.1 Streptococcus thermophilus strain ATCC 19258 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1932488 36 100.0 30 .................................... AATACGTGAGTTTGGCACTCTTGACGTGGC 1932422 36 100.0 30 .................................... CACAGTTGAGATACCGAATCCGAATAGCAT 1932356 36 100.0 30 .................................... TTAATTCAACGATTTTACGAGCTTTCTTTT 1932290 36 100.0 30 .................................... AGAAAGACTTCAACAGTCCAGAGAAAATAA 1932224 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 1932158 36 100.0 30 .................................... AACGACTGCACAGCGGCAGTATGGGTGAAT 1932092 36 100.0 30 .................................... TGATGAAGTCAACATCACAGACACAGGGAA 1932026 36 100.0 30 .................................... ACCTAACACACTTGTGTGTCCGTAGCTTCC 1931960 36 100.0 30 .................................... GCCAAACAAAAACAGAAATGATGAAGCGGA 1931894 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 1931828 36 100.0 30 .................................... AAAATGGAATTCCTGTTGATATGGTTAACT 1931762 36 100.0 30 .................................... CACTAGCAATGCCTTGCAAGGCTGCCCCAA 1931696 36 100.0 30 .................................... CTTCAATTGAATTGAGTATCTCGAGATAAG 1931630 36 100.0 30 .................................... TTATTAGTTTTGATATGCCACAAAATAATT 1931564 36 100.0 30 .................................... CATCACAGATACCGGAAACGGTGGTTATTA 1931498 36 100.0 32 .................................... CTTAAGAGTTACCCTCTTAATGGTCTTAAGTA 1931430 36 100.0 30 .................................... CATAGGTCATAATAACTTCATCGGTTGGAA 1931364 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 1931298 36 100.0 30 .................................... AACAGGTAGTAGATGGAATATTAAAGAAAT 1931232 36 100.0 30 .................................... TTCATTTCTTCCTCAACCTCATACCCAAAC 1931166 36 100.0 30 .................................... ACGTTCTTCGCTAGTTCTTCTAGCATAAGC 1931100 36 100.0 30 .................................... ACATCTGGAACGGTAGCACCAACGAATGGT 1931034 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 23 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATTTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTGATGTTATGACGAAATCGTCAGTATTTTTTGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //