Array 1 79536-79202 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB896388.1 Salinispora arenicola CNY011 C576DRAFT_scaffold00011.11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79535 29 100.0 32 ............................. AGCGACCGAACGTGGGCCGCGTCAAGTGGGCA 79474 29 96.6 32 ........................C.... GGGCCGGACGGCCGATACGAGCTGCACCCCCG 79413 28 96.6 32 ...-......................... ACACCGAGCCACACATCCACCCCACCACCGAC 79353 29 96.6 33 ............................T GAGGGCACCGACATGCCGTCTCTTACCGATTCC 79291 29 100.0 32 ............................. GGGCCCCACCGCGAGCACGACCGCCCCGGCGA 79230 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================= ================== 6 29 97.7 32 CTGTTCCCCGCGCAGGCGGGGGTGATCCC # Left flank : CAGCTACGACGAATTCGGCCACGCCGGCGACCTGCCTGTTCCCCGCGCAGGCGGGGGTGATCCGTTAGATCGTGGAAAGTACGGCACCGTCAGCAACTGTTCCCCGCGCAGGCGGGGGTGATCCCGGCGATCCCGGCGAGGTGGAGAAGGCCAAACTCTGTTCCCCGCGCAGGCGGGGGTGATCCCACACCCAGGGCGCGGCTCTTGCCCGATCCGGACCTGTTCCCCGCGCAGGCGGGGGTGATCCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GCGTCGACACCGTTCGGGATCATGGCTGGGGTTGAGGTTGAGACGGCGTGTGTAGTGGGCTCGTCGGGTTCGGGCGTGATGGCGGCGTCGCCATCCTGACCAGTGCAGACGGTGGGCCCGTCGGCAGCATCCATACGGTCACCGCATCGACCGGTGTGGCGTCGACGCGTCCTGTGGGGGCGCGAGTTGGGTCTGCCGCGGTACATCCCGTCCAGACCGAGGCGGACGCGTGGTTCGCGACCAGGCCGTCGTGCGGACACACCTGGCCACCCGAGATCGAACCGAGCTGCGCCTGTCTGCGCTGCGGCCGGCACTACGACGAGTACGCCGAATAGGTCCACACGTAGCGAACAGCCGAGCATTCGACCCGGTGGGCTTCCGGATACGGTCCGGCCACCCGTGAAGCGCAGGGGCCGCGCAGTCGATGTCCAATGCGTCGAGCCGCGCGGCTTCGGTGACCGCGCGGCCCTGCTCGATCGACGCCGGGGCCAGGGCCGAAT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCAGGCGGGGGTGATCCC # Alternate repeat : TCCCCGCGCAGGCGGGGGTGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81228-79789 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB896388.1 Salinispora arenicola CNY011 C576DRAFT_scaffold00011.11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 81227 28 100.0 34 ............................ CTGCCTCACCTACGCCCTGCAATGGCGCACAAAC 81165 28 100.0 34 ............................ CGTGATCACCTGCGGTCTGGCCGCGTGCGGAGAC 81103 28 100.0 33 ............................ CTGTTCGACTATCAGACGCTCGCCGAGCGATAC 81042 28 100.0 33 ............................ CTGTTCGACTATCAGACGCTCGCCGAGCGATAC 80981 28 100.0 34 ............................ CGCGGCGGTGATGGCGTCCAGCTCGGCCGCCGTG 80919 28 100.0 33 ............................ CCCGCCCGCGATAACGACCGCTTTGGCCATCAC 80858 28 100.0 33 ............................ CTCCCGTATGCCAGAGACGGACATGACGGTAGC 80797 28 100.0 33 ............................ GGCGTACGCCGAGGCAGTGAACAGCCGCATGCG 80736 28 100.0 33 ............................ CCGCGCGGCAACGCCGCGACAACCTGACCGGTG 80675 28 100.0 34 ............................ CTCGGCGACGCCGTGCACCATCTCGGCGACCCAC 80613 28 100.0 33 ............................ CCGGCGTCCATTGGCACAGTACGTCGCGTCGAT 80552 28 100.0 33 ............................ CGCGTCGAGCAGCTACTCGCCGAGCCTGAGCCC 80491 28 100.0 34 ............................ CGTGGCCACCGTCAACGACCGGCTGTGGATGGCC 80429 28 100.0 33 ............................ CGTGGATGATCGGCCCCGGACGCCGGGCTGGTG 80368 28 100.0 33 ............................ CCGGGGAAAACGCGCCCCGGACGACCGCGTGGC 80307 28 100.0 33 ............................ CTCGGTGTTCTCGACGACATCGCGTCGTTTCTG 80246 28 100.0 33 ............................ GTCTCGTGCCGGCCGCCGCTCCATCGGCCTGCC 80185 28 100.0 34 ............................ CATGCCGCCGGTCCGGCTTGCCATCGTCCTTGAC 80123 28 100.0 33 ............................ TGGGTGTGTGGTGCGGGTTCGAGACGTGGTTCA 80062 28 100.0 34 ............................ AGCTACGACGAATTCGGCCACGCCGGCGACCTGC 80000 28 100.0 33 ............................ GTTAGATCGTGGAAAGTACGGCACCGTCAGCAA 79939 28 100.0 33 ............................ CGGCGATCCCGGCGAGGTGGAGAAGGCCAAACT 79878 28 100.0 34 ............................ CACACCCAGGGCGCGGCTCTTGCCCGATCCGGAC 79816 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 24 28 100.0 33 CTGTTCCCCGCGCAGGCGGGGGTGATCC # Left flank : AGCGCCGTTTGCAGCACATCCGTCGCCTTGGGCCCGTTGACAAGCAAACTCATCAACGCCCGCGACGAGAGGTGGACGGTCATCGGTTCAGCCCCTTCTGCAGTGCATCCGTACACAGATCATTGTCGTCCAGTGTGGATGAAGTCGTTGAGGCCGACCCGTGGATAGCCGCTACAGCTGCAACTCACCTGCAGTTCGGCCAGCCGCTGCATGGTCGACCGTTGCGATGACCACTCGAATCCGCTCCCCGGAACCCCGGCGGACAGAGGCTCAAGGTTGAGCTGTCATTGATACAGTGGACTGCCAACCGCCAGCCGTCCGTTGCCAGCGATGTTCTGCCGGCCTCCACAGCTCTGCCAGCCACTCGGCTTGGGCCTCACTAACTATGCTGCAGCCGAGAACGCTAGCCTGCCATGTCAACTGCTACGGGAAGGACGATCTTGCGGGCCCTAGTGAATGAAATCCGGAAGATTGATCTCTAGCGTCGCAGGTGAAGAAGT # Right flank : CGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTCCCCGCGCAGGCGGGGGTGATCCCAGCGACCGAACGTGGGCCGCGTCAAGTGGGCACTGTTCCCCGCGCAGGCGGGGGTGCTCCCGGGCCGGACGGCCGATACGAGCTGCACCCCCGCTGTCCCCGCGCAGGCGGGGGTGATCCCACACCGAGCCACACATCCACCCCACCACCGACCTGTTCCCCGCGCAGGCGGGGGTGATCCTGAGGGCACCGACATGCCGTCTCTTACCGATTCCCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 54550-54217 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB896393.1 Salinispora arenicola CNY011 C576DRAFT_scaffold00016.16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54549 28 100.0 33 ............................ CCTGACCGCGTCCCCGGCGATCGCCCCGGCCGC 54488 28 100.0 33 ............................ CGGAGAGGTTCCGGGGTTCGAGACCCCGCGTCG 54427 28 100.0 33 ............................ GCGCTGTCCCTCCTCGTCCAGGAGGTATTCCCC 54366 28 100.0 33 ............................ CGCCTCCCCCGAGAGGTAGAGCTGCACGCCATC 54305 28 100.0 33 ............................ GGCGTGGTTCACCGCCAACTGCCCCGGAGTCGA 54244 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 CTGTTCCCCGCACGTGCGGGGGTGATCC # Left flank : CAGTAGCCGCAGCATCGGTGCGGTGATGTCCTGGTCGAGCCGGACGGCCCGGTAGATCTGGGCGCGGACGGCGGCGAGGTCCTGTGCGGTCGCCGGAACGTTCATGGGGTCCTCCTGGCCGGCAAGCCGTCTCGGGCAGGGCGGACGGCTGGCCACAGGCGGTCACACTCGCCACTGGTGCGCCGCGTGCGCCGGGACGTGACCGGCCTCCAGGCCGCACGCGCGGCCCGGCGCTGACGCGGCGGCGGGCCGAAGGCCCGCCCTTGACCAAGTAAAGAAACTCTGAACACACCACGCTTCAGCCACGTGTCCCGGTCTCAGAACGTGACTATCAAAGATCAGCTACGGCTGTGGCCTCAGCGCGACAGTCATGGTTCGTCGTCCCTTGAGGAGGTCGCTATGCTGCACCCAGTCTTTGCGCCCAAGGCGCGAGATTGATCTTGCCGGTTGTAGTGAATGAAAACACCATAGTTGATCTTTAGAGCCGCAGGTCAGGAAGC # Right flank : CGTCGACCAGGAGTCCAACCGGGAGGGAACCCCTGTTCCCCGCACACGTTATCGCATGGTACTACCTATATTGAAAATCAAAACCAACTATGCGAGAATCGCGCAGTGAAAACGTTGGCATTGACGACTGAGCGTCGTAATGAGTTAGCAGCGCTGCTGGATGATGAGCGACGGCTTCGGGCCGAATACCCAAAGGTAGCGGAGTACATGGTTACGTCGCCTATGCTGCCGGGCACAGACGACGCTCAGGCGGACGCAGAATTTGAATTGCGACTTCTCCACTATATGACTAGCTCCAAGGAGCGAGTTCAAAATCCGTATTGGGAAATACTTGCACCTTCGGTATTCGAGCATGATGGACGCCGTGTTGTCAACGGTGGAAGTCTAACCGGGAGTGGCAGGCTTGCCTATGCGGAGACGTTTCTTCAAGCAGCCTACGCATATGCTATACCATCTCCCGAGACGCTCGAATGGATAGCAGGGTTTTGTGCTGATAGGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACGTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2115-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB896392.1 Salinispora arenicola CNY011 C576DRAFT_scaffold00015.15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2114 28 100.0 33 ............................ CGGCATGTTGTCCGTGGTCGATGACTTCTTCGC 2053 28 100.0 33 ............................ GTGCTACGTCGCACGGGCGCGGCCGGCGACCAC 1992 28 100.0 34 ............................ CACCTACGCCGACGCGCTACGCGAACCCGCCCCC 1930 28 100.0 33 ............................ GTCAAGCCAAGGAGGCGCTAAGCCAACATGTAG 1869 28 100.0 33 ............................ CGGCCAGCAAGGAAACGACACGATCCTGGGCAC 1808 28 100.0 33 ............................ GGCGGGATCTTCGCCACCATCGCCGGCCGCTAC 1747 28 100.0 33 ............................ CGCCGCGACAACCTGACCGGTGTCCCGCCTGAG 1686 28 100.0 33 ............................ CATGCATCGGGCGCTGCTCGCCGGCGCGAGTGC 1625 28 100.0 33 ............................ CGCCTCAGCGAGCAGGTCGAGTGCGGCCACGAA 1564 28 100.0 33 ............................ CGTGTCACCTGCTCCGTCGGCAACCGTCCCGCC 1503 28 100.0 33 ............................ GCGGTCGTCCTCGTTGACCTCTGAGCAGATGAC 1442 28 100.0 33 ............................ CTGCTTCTGCAAACGGTTCCGCGACGGCACCTC 1381 28 100.0 34 ............................ CAAGTGGCACTCGGGTCCACCCCCCAGCCCGTTC 1319 28 100.0 33 ............................ CCTGACGTGGGCGGGCGGGTTCGCCGTGCACGC 1258 28 100.0 34 ............................ CAAGGGCATGCCGTGCTGGCACGCCGGGCGATCC 1196 28 100.0 33 ............................ CTGATCAACGCCACACTCCCGCGCCTGGATGGG 1135 28 100.0 33 ............................ CGCGGCGAGGAGCCACACGTCGAGGCCGAGGCC 1074 28 100.0 34 ............................ CGCCGAGCAGACGCCCCCGGTCGACCAGCCGGGG 1012 28 100.0 33 ............................ CGCGCACACCCGCCCCCGCTCGTCGGTGTAGTC 951 28 96.4 33 ..........T................. CGGGTCAGCATCTGCGTGACGACCTCGATGTCG 890 28 100.0 33 ............................ GTCGGCGCGGTGCTACTCGACTTCGACGGACCG 829 28 100.0 34 ............................ CCCGCTCGACCTGTCGGCCGGGGACGGCGATGAC 767 28 100.0 33 ............................ GTGCTACTAGAACAAAAGGTTCGCGAATTACAA 706 28 100.0 33 ............................ CACAAACCTCCGGCGCTCGTCGCTGGCTCCTGA 645 28 100.0 33 ............................ CGAGCGGCAGACCCGCGAGGGTGCCTCGGTCGA 584 28 100.0 33 ............................ GTCACGGCTGCTCGACATCGTGGAAGGCACCTG 523 28 100.0 33 ............................ TGACGACCAGCCCGGAGGGGCCGCAGGCGATGC 462 28 100.0 33 ............................ CCTGGAGTCGCTGGAGACCGCCGAACCCGAGAT 401 28 100.0 33 ............................ CGGTCATCCTCGTGCGAGGAGCTAGCCACGGCG 340 28 100.0 33 ............................ CGGGCACACCGGTTGGGAGGCCCGCGCCACCAC 279 28 100.0 33 ............................ CCGACCGTGCTACGCAAATTCGGCGGTAACACC 218 28 100.0 33 ............................ CATTGGGTGAGATTCCGTCGCGGAACCGCCTGA G [201] 156 28 100.0 33 ............................ CGCGCAGGGCGCCGGCCGGGAGCACACCCTCAC 95 28 100.0 33 ............................ CACCGCAGCCGACGGCGGGTGGCTCTCGCACGT 34 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 35 28 99.9 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : TCTGGGACGAAGGCGGTCTCGAGTTGGCCGGCGGCCGGAACTACGGCGGAGACCTAGACTTCTGATGACCATTATCATCCTCACCGCGTGCCCCGAAGGACTCCGCGGGCACCTGACGCAGTGGCTGCTGGAGATCTCCGCCGGGGTGTACGTGGGACGTGTGAACAGTCGGATCCGGCACCGGCTCTGGGCGAAGGTCGTCGACATGGCCGGACCCGGCCGGGCACTGCTGGTGTATCAGCAGCCCGGCGAGCAGCGACTGTCCTTCAAGGTGCACGACCACCACTGGGAACCGGTGGACCATGACGGGATCACGTTGATGCGCCGACCGACGCAACGCACGTCGCACAACCCCGCACTGCCCGCCGGATGGAGCAAAGCATCCAAACGCCGCAGGTTCGGCCGTCGGACCCCACAAGCACCTAACGAAGTACCGACGAGCCTGAAGCAAAGTGAAGGAAAAAGCAGTAGTTGATCTTTAAAGCCCCAGCTCAAGTAGT # Right flank : CATCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 14223-13401 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB896426.1 Salinispora arenicola CNY011 C576DRAFT_scaffold00049.49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14222 29 100.0 33 ............................. ACCCGGATCTGCACGCTGGCCTGGCCACGGCGC 14160 29 100.0 32 ............................. AGCGCCGCCCCGCCCGCCGTCCTGGCCCTACG 14099 29 100.0 32 ............................. GGTGAATTCCTTTAGCGCGTCGGCCGTTTTGT 14038 29 100.0 32 ............................. TGTACGTCTGGCAGAACAGCGGTAGTTCGCTT 13977 29 96.6 32 ............................G TGTGCGCGCCGAGGTTGGCACGTACGCGGGTC 13916 29 100.0 32 ............................. TGGCCGCCGCCCTCGACGCGGCCGACCGCGAG 13855 29 100.0 32 ............................. CACCACCGAGGGCGGGAACGCACACGGGCGAC 13794 29 96.6 32 ............................T TTCGGCCGCCGCAGCGGCACCACGTTGTCGTC 13733 29 100.0 32 ............................. AGCTCCGCGACTACAGCGTGCGCTCCAAAAGC 13672 29 100.0 32 ............................. ACCGGCACGTCCCGTGCTGCCAGCTCCGCCAC 13611 29 100.0 32 ............................. CTCATCACACGCGGGTATGGGCGTTCTCAGCC 13550 29 93.1 32 .....T......................T CACACGGACCGACTGTTGGCGCAGGCGGCCAA 13489 28 93.1 32 ............-...............G CTGAGAAACAGGAGATCCACGCCATGATCCGT 13429 28 93.1 0 .....................-......T | C [13416] ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.0 32 CTGCTCCCCGCGCATGCGGGGGTGATCCC # Left flank : TCGG # Right flank : GCGGCGATCACGTCCTGGTCCTCGTCGTCGTACTGCTCCCCGCGCATGCGTGTCAACGCCGGCTGAACTTTGGCTCTGGCGCACATTTGAATGCTGTTAGTGATCTTGGTTGTCGATCGCTAAGGGACGTCTCGTATCTCGGTAGTCGCTCCATGATGGATCATGTCCTACTACAGGTGATCTCGGCAGCCAGCCAAGAGTGGATCTTTCCGTTCACCGGACTGCAGCCCGCCCAGTTCCACAGGCTGGTTCGGCTGGTCGCCGAGCGTGGCCAGGACTCAATCCCTGACGGTCGGCCGGGCCGGCAGTAGTCGCTTGACCTCACCGATCGAGTGTTGCTGGCGGCCGCGTACTGGCGGACCAACCTGACCATGCGACAGATCGACCCGCTGTTCGGGTTATCGCCTTCGGCTGCTCACCGGGCCATCGACACCCTCGCACCCCTGCTGGCCCTGGCACTGGTACGCAAACGGCCGGTCGAGCAGATCACGATCGTCGAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //