Array 1 1177052-1174687 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYIQ01000001.1 Listeria monocytogenes strain N11-1252 NODE_1_length_1230510_cov_54.2175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1177051 29 100.0 37 ............................. AAGTACAAGCATAGATTTGCGAATTCGATTGAGCGTC 1176985 29 100.0 38 ............................. CAAATTGAAGATATAAACTACATTCAGACAGTCAGAGC 1176918 29 100.0 35 ............................. ACGATTACTACTACACCTGCCAATGCTAGTCAAGC 1176854 29 100.0 36 ............................. GAGTTCATTGTTTAAAATGATATATTTATCGCCTAC 1176789 29 100.0 34 ............................. CGGCTATCTTCCGCGTATTTGCGTATGGAATCAT 1176726 29 100.0 38 ............................. AGGTAAATCGATTATGTACGTCGAAGAAACGGAGCACC 1176659 29 100.0 35 ............................. AAAGATAGCGCCTTTACTTTATTTAAAACAGCTTG 1176595 29 100.0 36 ............................. AATGTTGAAAGTTTCTTCATTATCCGCAATATTATT 1176530 29 100.0 37 ............................. TGATTAAAATTTCACTAGGTTTGTCCTTAGGTCTAAA 1176464 29 100.0 35 ............................. ATCACAGGTAACATTGCAGTAGCTAAAGCTCCCAT 1176400 29 100.0 34 ............................. AACACTTAAGCCGAAATTTATTTTAGTTTCATCT 1176337 29 100.0 35 ............................. CTAGTTTCAACACTAACTTTTGCGTTTCTGGCGAC 1176273 29 100.0 37 ............................. TCTTTATTCACTTTCACAAAAGCTTTGCCTGCAGCGC 1176207 29 96.6 36 ................T............ TGTTGTATTTTTGCTGAAGTTCTTCATATGCATTGA 1176142 29 100.0 37 ............................. GCGTCCAGTAGGTATGCATAACGGTTGTTTTTCCACC 1176076 29 100.0 34 ............................. AATTGAGTGTTGAGCTCACCCACAGCATCACCAA 1176013 29 100.0 35 ............................. AAAATATCTCGTAACACGTCTACTTTTACATGACC 1175949 29 100.0 35 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCT 1175885 29 100.0 36 ............................. ATTGTATATATATTTCCATATTTTGTAGCCCAAATT 1175820 29 100.0 37 ............................. TTGCTTAATTTTAGGCTTAGGTGTGGCGGTGTCATAG 1175754 29 100.0 37 ............................. TTCTTTTATCCCAACCTATAGACGTATAAGTATCTAT 1175688 29 100.0 34 ............................. AAATTCCTCCATCTGTTACTTTATAGATTTCATG 1175625 29 100.0 34 ............................. AATGCTACGGATGCTGAACCTAGTGCTACTTTTA 1175562 29 100.0 34 ............................. ATGTACCTCGCCTTTTTTGTCTTCATAGCGCCAC 1175499 29 100.0 36 ............................. ACCGTTTTGGCGCGCCGCAGTGATAAAAGAAGTGGC 1175434 29 100.0 34 ............................. ATAGCTTATCAATCCGTTGGACAGATGAACCTTT 1175371 29 96.6 35 ..................A.......... TTCGTTAGCATTAACGCTGAAAATCAACTTCATGT 1175307 29 96.6 37 ................T............ TTTGTTCGATTTCGCTAATTTGGTAGTTTGTGACTTC 1175241 29 100.0 37 ............................. GTGGTTGGCAAGAAACCTTTTTTGACAGGTAATTTTT 1175175 29 100.0 37 ............................. AAAATAATCATTAATGCAAACGCAATACAAATGACTG 1175109 29 100.0 38 ............................. GTGGTAACAGTGTTCTTATTTCCTGGCGGAGCGCTTCC 1175042 29 100.0 34 ............................. TTGGTCCTTCCTATCCCTCCACCTCTTTGTTTTT 1174979 29 100.0 37 ............................. TCGTTCGACGGCTTAGACAACCATCACGCTTCTTTAA 1174913 29 100.0 37 ............................. TTTTCATCGCTGTTTTAGTGTCATATCCTAGTCCTTT 1174847 29 96.6 37 ...................T......... ACTTTCTTCACGAGTTATATGTATAATTTCATCCACC 1174781 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACC 1174716 29 93.1 0 .......................C....C | A [1174691] ========== ====== ====== ====== ============================= ====================================== ================== 37 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGGAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAAGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCAAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTGCAACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTTTTATTCGCAAGTAATTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //