Array 1 44329-44827 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMDC010000012.1 Enterococcus faecalis strain U1911770 NODE_12_length_77476_cov_25.865777, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 44329 37 100.0 29 ..................................... TACATGTGACAGCAGTTCTACTTACATTC 44395 37 97.3 29 ....................................C GAAGCACGATTGATATTAGCGCAACTATC 44461 37 97.3 29 ....................................T GGCTTGTTGTTACGTGTATTACAGACGGG 44527 37 100.0 29 ..................................... CACACACACGCTACTCACAGGCATTATAG 44593 37 100.0 29 ..................................... TGCAACAAAAGAATATTGTTGTCAATGGT 44659 37 97.3 29 ....................................A TCAGTTGTCGGGAAATTGCCGGAGCGTGG 44725 37 97.3 29 ....................................T CATAGCAGACCAACCTGCTCCATCGCTTG 44791 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 8 37 98.3 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Left flank : GCACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTACTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAAAAAAATAATTCTCCGAG # Right flank : CAATGTAAATGCTCATTATGATTTACATATGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACGATTTGATTGATGTAAAAATATCGTTAATATGTATAAATATGGTTATTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAAAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGCCCCAATTAAAGTCAAGTTAACCACATTGAAAGATAGAACTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAAAGCGGATTAATTTCCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 67047-66416 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMDC010000008.1 Enterococcus faecalis strain U1911770 NODE_8_length_125640_cov_23.939895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 67046 37 97.3 29 ....................................C CTAAAGCACTAACAACTTCCCACAATGCA 66980 37 100.0 29 ..................................... GAACAATCAGGTAAAGCATACTTTACAGA 66914 37 97.3 29 ....................................A GTGCGTTTCAACTCTGTTACGTCAAGTGG 66848 37 100.0 29 ..................................... TCCTCATTTTTAGACAAGTTCATTGCCAC 66782 37 100.0 29 ..................................... TCTGGATCAGGAGGTGGATCTTATCAAGG 66716 37 100.0 29 ..................................... GCACCGTCAACGTATGTTGGGAGCTCGTA 66650 37 97.3 29 ....................................A GCAAAAGAAGAAAAGAAAACAAAAGTTGC 66584 37 97.3 29 ....................................A TGTTGAAGTAGAGCGTGATGCAATCCTAA 66518 37 97.3 29 ....................................G CTAATTTAAAGGCAAAGGCAAGAATAGAA 66452 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 10 37 98.6 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CATATATCCTTATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : CAAGAAATTGCATTAAGTTCAAAAAATTTGTTTTAGAGCCATGTTGTTAAAAAACAAACTATCACCACAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCGATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //