Array 1 8951-9222 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMEB01000112.1 Acidithiobacillus thiooxidans strain Licanantay scf7180000006397, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8951 29 96.6 32 A............................ GCGAACGCGGCGAAGGCGTTGGATGTGAATGC 9012 29 100.0 32 ............................. AATAGCCCGAGTCGTAAGCCGGCAGTCTTTGG 9073 29 100.0 32 ............................. TAGGTCCACAGGGTATTCGCAGACATGCCGTA 9134 29 100.0 32 ............................. AAAAGCCTGGGCTATGAGGTCTGCGTGGCTTT 9195 28 96.6 0 .....-....................... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GGTTGCCCCGTGTATGCGGGGATGAAAGG # Left flank : GTTCTGTTGGGGGATGCGGTAATTTAAATAGTAACAGACATGGAAGGCAAGCACGCTGACCAGCAGCCAAGGAGATCGTTATGCACGTAGAAGCAACGATAAACGGGAAAGACTTCAAGCTCAACCTTACCCCGGGTAAGCAGAGTGAAAACCACGCGGCCATAAAAGCGGCCGTGGAATCCACCGGCATCTCATGGCTGGAATCCGAGATCCTCGTCGTTAACTTCCCGGAACGTGGGAGAGGCTTGAACAAGCAGTCCGGCTACCAGAGCCTGGGGGCGAGCGGATGATGACCCACCCCACCCCCACCGAAATCAAGGCCTGGCGCGTATCAGCCGGGATCACACAGGCCCAGGCGGCGGCGCTAATCGGCTATACAGCCAGATCGTGGGAAAACTGGGAGCAGGGGGCGCGGCCTATGCGCCCCGTCCTGCTCGATCTTGCTCGGCGATCTGTCAATCCACCCAGTCTGCCAGTATCGCCCATATAACTAACCCACT # Right flank : GCAGTCAGTATAAGCGCAGGATCGGGCAAACAAATAAAAAAGGAAACCCAAACCCGATTGTAGCTGTAGGGGCCTTGTTTTTTCCATGCGTGATTCCAACAAACCAAAGAGGCTTTTCCAGTTGATGCAAAACAAGATTCATGATAATTATTTATTATCGTGAATGATAAAGGGGCCTCCCCCATGCCTGAAACCAACGAAATCCATCCAGAATTTTCAGAAATAAGTCGCCGGATCAGGGTTGTGAGCACACCCAACACCAGCCAGACCTATCTGAGCCGCATCAAGGGCTATTTGATCTGGTGCCGTAAAAACAAAATCGATCCGCAACAAGCCTTGCCAGAGGTTATCCTGGACTACCTGGCGCACCGGGAATGGAAAAAGTCCACCAAAACCACGACCATGGCCGCACTGGAAGCCCTGTACGAAGTGATGAGTGGAAACTGGGGTATCGCAGAAAATCCCGCTTATCTGGCCAGCCAGATAAACACGGAAAAGCG # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCCCCGTGTATGCGGGGATGAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 757-1325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMEB01000295.1 Acidithiobacillus thiooxidans strain Licanantay scf7180000006580, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 757 28 100.0 33 ............................ CGGGCTTCATTCTTAGAAAATGGGCGAAGGGCG 818 28 100.0 32 ............................ ATACTGGCTCCGGGGATGGACGAAGCTGACAC 878 28 100.0 32 ............................ TCAAACTCGGACAGGCCATCGGCTTGCGCTAT 938 28 100.0 32 ............................ GGGATGTGAAACTGGGGAAGAGGGCCATTCAG 998 28 100.0 32 ............................ AAATCCTCTGGCGGCGCGGGCACTACGGTGAC 1058 28 96.4 32 ............G............... ATGTGCATGATCCCATGGATTACCAGATAGGG 1118 28 96.4 32 .......G.................... AGTTCGTTAAGATCAGAATTACTCATAGCGTC 1178 28 96.4 32 .................C.......... AACCACTGGTACCGCAAAGCCGCAGAGCAGGG 1238 28 92.9 32 ..GT........................ TGGAGAACAGCATACGGGAATGCGCTGGATCA 1298 28 89.3 0 ............G........C.....A | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.1 32 GTTCATCACCGCATAGGTGATTGAGAAG # Left flank : GGTTCACTCCCTATCAGGAAGTCCGACGTATTCTTCTGGCCCGTTCTCCGGCGCAACTGAGCGTCAATGGGCACGAGTTGCAGGCGCAAGCCTATCAACCGTGTGCGGATAAATCCTCTGTACAGATTTGTACAGGTTTATAGGAACAGACTCAGTATAGCCCATTCCCCCGCTTCAACGGCCTTCTGAGCAGAAAATTGGCCGGTTTAGGTCCTCTTCGCATGATTGAGAAGACGGCTGGTCGCTATACTCCCCGTCAATTTGGGCCTTCCGAAGGAGTTCTGGGTGCGGCCAGGCGACAACAGGAACCAACGGACCGTCAGTAATAGACTGAAGTTTTGTTGTACGGGGCTGAACAGGGTAAAAGCCCATCGTTTTCAGGTCATATTAAAAGATAGCATGAAATCAGTTACTTGAAACTTTGTGCCGAATTCGATGTAGTTGAACCAAGAAACAGTCTAGTGCCTTGGTTGTCATCGACTTTTTTGTTTCTACATCTA # Right flank : ACCCCAACTGAGTCGTTTTGCTCGCCACACCAATGCGGGGAGCAAACGGTAACTTGATGTTTTTCAGGCTTTTTCCGCGCATTAAAACGTAGCCGTTGTGGCGCAGTTCGGCTTCGTTGGCATGCTGACCGGCGTGAGCTTGTCCCAGGCTTTCTCGTTCATGAGATTCGCCATGGTTTCGGTATTTCTGGTATACTCAAACATCGTCAGATAACCCGCAGGCCCAGAAATGCCAGAAGTCAGCCCATCTACAGGAAAAGACGCTATCCAGAACCTGCTGGAGACCATCCTGGGAAGTTCGAACGAAGATAAAGCCTCCTTATTCAAGGCGGTCAGCCAATTCCAGCGATGGAGGACGCCCAGGCTTACGCAAGAGCGGGCAGGCTGATAAGTTCACGTATTCCCTGGTCTATCCCCTGGAGCGTGTGGTCGAAGGGCTGTTGGAATCGACGATACCAGGTCGTGTGAAGGCCCAGTTCATCCTTCAGCACTATCGGTTC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATCACCGCATAGGTGATTGAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATCGCCGCACAGGCGATTGAGAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //