Array 1 1965496-1965167 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063694.1 Erwinia amylovora strain 1-2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1965495 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 1965435 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 1965375 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 1965315 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 1965255 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 1965194 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1979318-1976297 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063694.1 Erwinia amylovora strain 1-2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1979317 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 1979256 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 1979195 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 1979134 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 1979073 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 1979012 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 1978951 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 1978890 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 1978829 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 1978768 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 1978707 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 1978646 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 1978585 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 1978524 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 1978463 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 1978402 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 1978341 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 1978280 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 1978219 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 1978157 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 1978096 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 1978035 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 1977974 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 1977913 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 1977852 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 1977791 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 1977730 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 1977669 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 1977608 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 1977547 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 1977486 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 1977425 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 1977363 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 1977302 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 1977241 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 1977180 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 1977119 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 1977058 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 1976997 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 1976936 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 1976874 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 1976813 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 1976752 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 1976691 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 1976630 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 1976569 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 1976508 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 1976447 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 1976386 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 1976325 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGCTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCAGCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1994212-1988357 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063694.1 Erwinia amylovora strain 1-2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 1994211 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 1994150 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 1994089 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 1994028 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 1993967 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 1993906 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 1993845 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 1993784 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 1993723 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 1993662 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 1993601 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 1993540 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 1993479 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 1993418 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 1993357 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 1993296 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 1993235 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 1993174 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 1993113 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 1993052 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 1992991 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 1992930 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 1992869 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 1992808 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 1992747 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 1992686 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 1992625 29 100.0 32 ............................. GGCACCGCCAATCTTCTGGCCCCAGTGATTAT 1992564 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 1992503 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 1992442 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 1992381 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 1992320 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 1992259 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 1992198 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 1992137 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 1992076 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 1992015 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 1991954 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 1991893 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 1991832 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 1991771 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 1991710 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 1991649 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 1991588 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 1991527 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 1991466 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 1991405 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 1991344 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 1991283 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 1991222 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 1991161 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 1991100 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 1991039 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 1990978 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 1990917 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 1990856 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 1990795 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 1990734 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 1990673 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 1990612 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 1990551 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 1990490 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 1990429 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 1990368 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 1990307 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 1990246 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 1990185 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 1990124 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 1990063 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 1990002 29 100.0 32 ............................. ATCTAGGTTTGCCGGTTTCAGGATCATCAGGA 1989941 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 1989880 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 1989819 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 1989758 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 1989697 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 1989636 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 1989575 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 1989514 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 1989453 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 1989392 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 1989331 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 1989270 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 1989209 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 1989148 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 1989087 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 1989026 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 1988965 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 1988904 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 1988812 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 1988751 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 1988690 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 1988629 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 1988568 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 1988507 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 1988446 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 1988385 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 96 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //