Array 1 11635-11480 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQS01000085.1 Cronobacter sakazakii strain E772 csakE772_contig_86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 11634 33 100.0 27 ................................. GCAGCCCACAGAGCGGACGTTGATGGG 11574 33 100.0 29 ................................. ACGGCCCACGGAACAGGCGTTAATGGGGA 11512 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================= ================== 3 33 100.0 28 ATGTAGGGTGGGTAAGCGAAGCGCACCCACCAC # Left flank : TGGGTTGCGGTTACGGCGGGTGCGAGGGTGACGGTTACGGCGGGTGCGCTTCGCTTACCCGCCCTACGGCTCCCGCAATGGGCTTTGATGA # Right flank : ATCACAGATAATCACACCTCACCACAACCCCTCCCGCCGCAACGAGAAGAGCTTACGACGCGGCGATAAACAGCTCGCGCAGTTGATGAAGCTTATCGCGCAGTTGCGCCGCCTCTTCAAACTCCAGGTTCTGCGCGTGCTGCACCATCTGCGCTTCAAGCTGATGAATTTTCTGCTGCAACGCTTTTGGCGTCAGCGCCAGTTCAGCGGCTTCGGCATCTGCCACGGTGCGCCCTTTTCCGCGTCCTTTCGGCTTGGTTTTCGCAATATTCTCGCCAAGCGCCAGAATATCGACCACTTTCTTGTTAAGCCCCTGCGGCACAATACCGTGCTCTTCGTTATACGCCTGCTGTTTCTCACGACGGCGTTCGGTTTCGCCAATCGCCTTCGCCATCGACGGCGTGATTTTATCGCCGTAGAGAATCGCCTTGCCGTTCACGTTACGCGCCGCACGGCCAATCGTCTGAATAAGAGAACGTTCGGAGCGCAGGAAGCCCTCT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGGGTGGGTAAGCGAAGCGCACCCACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 109995-112646 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQS01000009.1 Cronobacter sakazakii strain E772 csakE772_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109995 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 110056 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 110117 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 110178 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 110239 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 110300 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 110361 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 110422 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 110483 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 110544 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 110605 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 110666 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 110727 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 110788 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 110849 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 110910 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 110971 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 111032 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 111093 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 111154 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 111215 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 111276 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 111337 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 111398 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 111459 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 111520 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 111581 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 111642 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 111703 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 111764 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 111825 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 111886 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 111947 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 112008 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 112069 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 112130 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 112191 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 112252 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 112313 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 112374 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 112435 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 112496 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 112557 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 112618 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 139083-140271 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQS01000009.1 Cronobacter sakazakii strain E772 csakE772_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 139083 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 139144 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 139205 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 139266 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 139327 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 139388 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 139449 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 139510 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 139571 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 139632 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 139693 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 139754 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 139815 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 139876 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 139937 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 139998 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 140059 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 140121 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 140182 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 140243 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63687-63835 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQS01000020.1 Cronobacter sakazakii strain E772 csakE772_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63687 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 63747 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 63808 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //