Array 1 163471-164820 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJHB01000005.1 Klebsiella oxytoca strain CLF20 CLF20_BDMS190049473-1a_1.clean_(paired)_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 163471 28 100.0 32 ............................ AAAAACTGAGCGGCCGCAGAATGAAGTTGTAA 163531 28 100.0 32 ............................ TCATTTGGCGACGTGCCTTGTGCGCGCATTTC 163591 28 100.0 32 ............................ GTCAAAAGAATGATTTCCTGCACAGGGTTCAA 163651 28 100.0 32 ............................ AGGAGCGGGTCATATTCCACCGTCGCGGCTTT 163711 28 100.0 32 ............................ GGAAGACTGGCCTAATTATGAGGTGCGTTATC 163771 28 100.0 32 ............................ TGCAGCAGCGGGTAACGTTCCTGACGACGACC 163831 28 100.0 32 ............................ CAATACTCACCATTGATGAGCAACGATAAAAA 163891 28 100.0 32 ............................ GTAACCGCATGTCGGCTTTTGCTGCATGGTGG 163951 28 100.0 32 ............................ TTCGGCCATACCGCGATACGACGCTTAACCAG 164011 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 164072 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCATGTAAC 164132 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 164192 28 100.0 32 ............................ GGCTGCGTCGGGACCCACCACATCGCCAGCAG 164252 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 164312 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 164372 28 100.0 32 ............................ TGCCGTGGCGGGGTTGGCTCCAGCCACAATCC 164432 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 164493 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 164553 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 164613 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 164673 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 164733 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 164793 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCATCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGTTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGATAAAGAGAAAAATGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AAGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACCGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAATGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGAAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGGAACGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCAGTTAGCCAGGCTGCAATGCGTGAGTTCGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCCGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 173249-174237 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJHB01000005.1 Klebsiella oxytoca strain CLF20 CLF20_BDMS190049473-1a_1.clean_(paired)_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 173249 28 100.0 32 ............................ TTATCCACGGCTTCCAGCAACTCGGGGTTTTC 173309 28 100.0 32 ............................ AAATGGGCCGCCAACGAAAGCAAGAGCACCTC 173369 28 100.0 32 ............................ AATACTGGAAGGATATTAAGCGTGGCGGTATT 173429 28 100.0 32 ............................ ATATCCGCCGCGCCGGATAAGCCTTGCTGCCC 173489 28 100.0 32 ............................ ATCGTGTCTGGGAGAATGTCTTTGCTCATAAT 173549 28 100.0 32 ............................ TGAAATTGATAGAAGGTTCTGAGCAAACCTGC 173609 28 100.0 32 ............................ ACGATGTGAACGCTATCGCTATGCACACCACT 173669 28 100.0 32 ............................ TCGGTGCGCAGTCCAGATATTGCGATATACAC 173729 28 100.0 32 ............................ ATTAAAACCAATAGTCTGACGATCCAGCGCCA 173789 28 96.4 32 ..........C................. AGATAGCACCGCCTGGGCGCATATCTTTCGCC 173849 28 100.0 32 ............................ CGATGCCTCCGATAAGAGAAAAGGCGTTCTCT 173909 28 100.0 32 ............................ CTGGAAACATAGCAAATGGCACCGTGTTACAA 173969 28 100.0 32 ............................ TCAAAAAGTACGGACGGTGGACGGTGAGCGAA 174029 28 100.0 32 ............................ ATTCGCGTTAACTACGAAGACAGTAACGGTAA 174089 28 100.0 32 ............................ AGATAGCCACCGCCGAGTAAGACGATTGCCCC 174149 28 100.0 33 ............................ CTGACCGGTATCAATTACGCGCAAATCCATTTG 174210 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACACAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTGACGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTCAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTATATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTATAGTGGTTAGGCTTCA # Right flank : ATCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //