Array 1 213404-214362 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIUQ01000003.1 Planktothricoides sp. SR001 contig_115, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 213404 36 100.0 37 .................................... ACAGAGGTAAAGGTATGGGTGTTGAATACAAGACAAG 213477 36 100.0 35 .................................... AGCAGTAGAAAAATCATCTTTTGAAACATACAATA 213548 36 100.0 35 .................................... CTTTGCCCTGCTGTCTCGATTCGACGATCATCAAT 213619 36 100.0 35 .................................... TTGATTGATTGTTTGTGCTTTTTGGATAGAAGAAG 213690 36 100.0 36 .................................... TTTATTGAAACTGTTACTCAATTTAGCAGTCGCCCA 213762 36 100.0 33 .................................... AAGAAATGGGGGAGATGGCGAGTCTGCCATCCA 213831 36 100.0 33 .................................... TTGGGAAGCGCGAAATATGTGGTGACAATACCT 213900 36 100.0 36 .................................... TAGGGCAGCTTTATTCAAGCTTTCCCTCTGCTTTTC 213972 36 100.0 34 .................................... GGTGTGCGGAAAGGATGGCTCACCCCCCAGTACA 214042 36 100.0 35 .................................... GAAAACGATTTCCGAACCATCGTCGCGGTTTGCAG 214113 36 100.0 35 .................................... AGTAGTGCAATGCGCAGAAAAAAACGAAGACGGTA 214184 36 100.0 34 .................................... TCGCTAAAGTTTTAACAATTTCTTTGTTACTAAG 214254 36 100.0 37 .................................... ACTCAAAACGGATTGGCGGCAATTTTGTTCCCTTTTT 214327 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 14 36 100.0 35 GTGCTCAACGCCTTACGGCATCAGAGGTAAGAGCAA # Left flank : GGTGATTTCACCATGAAAGTTAAATGGAAAAAAAGGACTTGGCTGTTGCCTTGTCCTTTTTTTTCGCTACTTTTTGTGCTCAACGCCTTACGGCATCATACCAAATCCGGTTGTTAAAACCCGTTTATCAGGTCAGATGTCATTCCCGCGAAGGCGGGAATCCACAAGCGTTTTAGGTAACGATCGTAGTCAGTATATGAGAACCGGATTTGGTATCAGAGGTAAGAGCAACGAATTTACAGCGGTTTTCAGATTGCTGAACCACGGTAGGACCCGCGCATTCCGTAGGGGCGTCCTTGCGGAGCATAATCCGTCAGGCTTTATGGCCAGAAAGCCCGTACATTTAATATTTTAAGCATTGTAGGGGCGAATGGCCATTCGCCCTGGTACGGGCGAATGGCCATTCGCCCCTACGGAATGCTTCGCCCCTACAGATGCTTTGTGGTTTACTCGCGGCAGATTTGCGCTATAAGTCAAACTCTAGGTTTCGGTTTGGTGGT # Right flank : AGGCATCAACCAAAACCCTTAAACCAACTGCTTTGCCTTCCAATTTTACAAGCACCTGCCAAAAAAAGCAATCCTACTGGCCAAATCATCACAAAACTCAACGATTCTGGCAAACGAGCCAACCGGAAATCCCCACAAATCATAGCTTTTCCCCTCTATCACAAAATTGCAAGCATCAAAGGGCAGGAAAAAAATCCTCAAATCCCTGCCCCTTGAGCATTTCCGACTTTAAATCACCAGGTCATCCCTTCACAAGCAGCAATGCTTGCATCATCATAAAATCCGAAAACATTCTGGTTGGTCTGGCCAAGCCCCCTCTCGATTATAGGCCGGAATCCCTTGCACGCATTGGTTTGGCAGCCGAACCAGCAGCAAATCATCCTCTGCGGTCAAAATCTTCTCCAACTCCCAGCGCAACTTTTCCCGTTCTCGCTGAGACAGCCAACAACGGAAAATAGAATATTGCATCCGTTCCCCATATCCCTCCATCAGCTTATATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTACGGCATCAGAGGTAAGAGCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 2566-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIUQ01000006.1 Planktothricoides sp. SR001 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================== ================== 2565 37 100.0 38 ..................................... GCAACAAAAAGCCCATGATTGGTGCTTCGATCTATGCG 2490 37 100.0 39 ..................................... CAACATCAGGCAATTGACTGGATATTGCGGCCACGGCCA 2414 37 100.0 36 ..................................... CTAAGTGTAAGCAAAAGAGAGAGATTCATATCACGA 2341 37 100.0 34 ..................................... TTGGAATAAATGTTTATGTTCCTGAAGCTTACTC 2270 37 100.0 37 ..................................... GCCCCGGTGCCGCCATTAGCAATCGCTAATTGCCCTG 2196 37 100.0 35 ..................................... ATCCCAAACATTGTAATGGGCTAAACTTTCATCAG 2124 37 100.0 36 ..................................... TTCCACGCAAGGCTGGAAGTGTAGCAGGTAAAGCAG 2051 37 100.0 37 ..................................... TTTGGGATCGAGTTTTGCGCGGTGCGGGGTTGGGTTG 1977 37 100.0 36 ..................................... GAGTATTGGATTATTCTCGTTGCAGGTCTGATTATT 1904 37 100.0 37 ..................................... GACTTTTAAGAAAACCAATCCTCTCTAATACCTTACT 1830 37 100.0 38 ..................................... AGAATCAAGATTCTCAGGATTTTGCAAATAACCAGCAG 1755 37 100.0 35 ..................................... TGGGAGCAATCGCCCGATGACTTCGATTTGGCGAT 1683 37 100.0 35 ..................................... TCGTAACCACTGCACCAGCAGGGCACAGAGTAAGA 1611 37 100.0 37 ..................................... TTTGTGCCAAGCTTCTCAGCAAAAGCTGAGGGCAAAA 1537 37 100.0 35 ..................................... CAGAAGCGCCACCAGAACCTAATACTTTAGCCCTA 1465 37 100.0 35 ..................................... CAGTGCAATTCTTACTTGAGTGATTTCTGCTACTG 1393 37 100.0 36 ..................................... CAAACATTCCAAATCCTTTGATTTCAATCTCCTTCC 1320 37 100.0 36 ..................................... ACAGATACTCTCAATCTCAGGAAATCCCACAAAGTT 1247 37 100.0 106 ..................................... ACGGCAACTCCTTCGGTAAGAAGACCCTCTCATAATTTACCTCTTCATAGACTAATTGCATCGAATTGAAACACGGCAAATCCTTCGGTAAGAAGACCCTCATCTT 1104 37 100.0 35 ..................................... AGATGGTTTTACTACATTGTCTGGCGAAACCTGAC 1032 37 97.3 35 ...........................T......... AACAGAAAAGATTTGGACAGTGATACCGCTGACTT 960 37 100.0 36 ..................................... TCCAGCCAGGGCTTAATATGTTTTTCCCACAGCCAT 887 37 100.0 37 ..................................... TTATTTCCAAAAAATCAACAAAATTACACTGATTTAT 813 37 100.0 38 ..................................... TTTCAAAACTTAATCAGTGAAAATTTTAATGCCATCAC 738 37 100.0 34 ..................................... CAATCGCTCCTGGTTTTCTTTCGTTTGAATAATG 667 37 100.0 37 ..................................... GCTTTTTCATCTGATGATACGATGCAGCATACCCTTT 593 37 100.0 39 ..................................... CGGTATCATGGCAACCTATGGTATTCGTGCTCACGAATT 517 37 100.0 36 ..................................... ATAGATATAGACATATTCTGTTTGAAGTTCTAGTAG 444 37 100.0 34 ..................................... CCATTGCTTATGTCCCCTAAATTGATTTGTTAAC 373 37 100.0 37 ..................................... ACTTGATTGGCGATCGCCTGCGGATGAGATTGAAGGG 299 37 100.0 38 ..................................... TAATATCCATTCCTTAAAATCATGCTCTGCTTCTGCTT 224 37 100.0 37 ..................................... CTTAGGTACGCTTGGAACCCCTTGCGGTGGCGCTTCT 150 37 100.0 39 ..................................... AACTTAATCTTCAGAGTGTAATCTGCTGTGACAAATCGA 74 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================== ================== 34 37 99.9 39 GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Left flank : GTCGTTGCAACTATATTGAATCCCTATTAGGGATTGAAACGGCCATCTCGAAAGCGATCGCCCGACTGAGAAAAGTTGCAACTATATTGAATCCCTATTAGGGATTGAAACTAAAACTCATTATATTTTCTCCTTAATTTGATTCCAGTTGCAACTATATTGAATCCCTATTAGGGATTGAAACGCTATCGCTCCATTTAAGTGTAGTTTTCTGATGCGTTGCAACTATATTGAATCCCTATTAGGGATTGAAACTTTCCTGCCGCCTACGCCGGTCGCGGCCTAGCATTGTTGCAACTATATTGAATCCCTATTAGGGATTGAAACTGACCCAAATCACCAAAAAAGCGGGAGAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTCTCCCGCTTTTTTGGT # Right flank : CCTATGACTTCCAGACGGACTGTATACAGATGATAGGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 14290-2739 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIUQ01000006.1 Planktothricoides sp. SR001 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================= ================== 14289 37 100.0 36 ..................................... GGTTGATGAATTTTTGCGGGCTTCAAAAGATGAGCA 14216 37 100.0 37 ..................................... CAACCCGTGGGGAATTGCCCTTAGACTCAACCCCCAA 14142 37 100.0 34 ..................................... GGCAATTTGTAACTAATAAAACTTTACAGTAGCA 14071 37 100.0 35 ..................................... AAACGAAGGTGGCAAGCTTGACAAGGTAAACTGGA 13999 37 100.0 37 ..................................... GCCCGAAAGCCGGTAGAGCAGGCAATTTTTGAGTAAC 13925 37 100.0 37 ..................................... CAGATCAAGCATTTTTTAACCTCTAAAATGGGATAGA 13851 37 100.0 37 ..................................... TACCAAAAACGGATGCGCTTGTGGGCCGAAAAAGCTG 13777 37 100.0 37 ..................................... GCAACTTGGCACTTTCAAATTGGTTAGAATTCCATGT 13703 37 100.0 37 ..................................... CCTGAGAGCGATCGCAGCCCATCTTTCATCTCTAGGC 13629 37 100.0 38 ..................................... AGGAACAGACCAATTGATTAAACCCATCGCCCTAAGCT 13554 37 100.0 36 ..................................... TAACCAAGAATCGCGATACACACGGGCTAAGGCTTC 13481 37 100.0 35 ..................................... GGATCGCCCCTTGGTAGTACGGATGGACAAAATTT 13409 37 100.0 37 ..................................... GATCTTAACAGCGATCGCGTGATTTTTTCTACTTAGT 13335 37 100.0 38 ..................................... TCACAGTCAATTCGACAAATTGAAAATCCCTACGATGA 13260 37 100.0 34 ..................................... ACCCTACTTTTCTTGCCTCACGAATCAACGACAA 13189 37 100.0 37 ..................................... GATTCACCACTCTAACAAGAACACGGAGCAAACCGGG 13115 37 100.0 35 ..................................... CCTACCACGGGCACCTAGCGGATAAAACCGAACCA 13043 37 100.0 35 ..................................... TTACAACAGATTATAAGCCATAAAAACAGTGATCA 12971 37 100.0 37 ..................................... CGATGCCGAATTTACCAAGTTTAAGAACTTGGTAAAG 12897 37 100.0 38 ..................................... TGCACTTATCTTTCCGACAATCGCCAGCTAGAGAAAAT 12822 37 100.0 35 ..................................... CGCTGCATTGCCAGAGATATTGCCAGTAATTTGTG 12750 37 100.0 36 ..................................... CCGTCCACGATGGAATCTAGTTCCCATCTCTTACAA 12677 37 100.0 37 ..................................... TACTGGCAAAAAACCCTTAAAAGCCAACAGCCTTATC 12603 37 100.0 35 ..................................... TTGGCTTAAGAAATGGCCAAAAAATAGAGATAAAA 12531 37 100.0 35 ..................................... TGAATATCGCGATCGCCATAAATATATTCTGCTAA 12459 37 100.0 36 ..................................... AAGCCACCCAACCCAACGGATCTAAGTGCTTCCACA 12386 37 100.0 37 ..................................... ACTCGAAGCGGCTAAAGGCTAAATCCCCAAAACAAAA 12312 37 100.0 36 ..................................... TGCATATCCCTCGGAAGGCATCCACCAGTCACACCA 12239 37 100.0 33 ..................................... GCAGACAATAGGAGATGCCCCCTATTGTTTCGG 12169 37 100.0 39 ..................................... AACTTTCAGCAATTCACTGGGATTGATCACATACACGGA 12093 37 100.0 35 ..................................... AACAATTGCCCAGCATCTAATTGAATAACTTCATA 12021 37 100.0 35 ..................................... GCGATCGCAGTGGTGGCGGTATCGGTTGCTGTATC 11949 37 100.0 35 ..................................... CGCGGGCGGAGCCGCACTACTATTTGCAAAACCAA 11877 37 100.0 35 ..................................... ATTAAAATGGCTTCTTTAGCCAAATCAAGGGTTAG 11805 37 100.0 35 ..................................... TCACGTCTTCAGCGATACTCTCTGGCACCCGGATA 11733 37 100.0 34 ..................................... AATTTTTTGAATTATTGGATTTTTATTCGATTGA 11662 37 100.0 35 ..................................... ATCAAAACCTCTAATGATTGCCAAAGTTCTTTGGC 11590 37 100.0 36 ..................................... ATTTTATTTTCATTGTAACACAGTTACCAAAAAAAG 11517 37 100.0 35 ..................................... TTAAAACTCATTGTACTTTCTCCTTAATTTGATTC 11445 37 100.0 34 ..................................... AAAAATTATTCAAACAAATAACTTGTTTTTTCGT 11374 37 100.0 36 ..................................... ATCGAAAGCAAAACTGGAGACCAAAATGCAAAATTT 11301 37 100.0 45 ..................................... AGATGAGTTGAAACTTGATGGCTTACTGGTGCCACCATCGGCACA 11219 37 100.0 36 ..................................... CATAAATTGTTTTTGCGGATTCCTTGAACTCGGTAA 11146 37 100.0 35 ..................................... AGATAGAGCTACAACAGAAGCCTTTGCGAGATCAG 11074 37 100.0 37 ..................................... TTTTTTCTAGAAACATTTCATAATCTTTTATCCGCGC 11000 37 100.0 36 ..................................... CCTGCCCTTCTTCGGGAGATAACCGGAATTGACCAG 10927 37 100.0 36 ..................................... AGAAATATCTGTACTCAGTGGTAGCCTATCTATATA 10854 37 100.0 36 ..................................... TTCAAAGTTTGGCGTGTACGCATCAATCCATTTACT 10781 37 100.0 35 ..................................... GGACACGACCATTTCCCGGTGCTGTTGAAACTGCG 10709 37 100.0 37 ..................................... TGTGATTTCCAATTGCAACCATCGGGGGTAGACAAGG 10635 37 100.0 36 ..................................... GGATTTAAAAAAGTCCACGGGGTTAACACTAATCTG 10562 37 100.0 35 ..................................... AGATGTTGACTTTGTTTCGGGTTCGCTGGATTCAA 10490 37 100.0 34 ..................................... AATATCAATTTTTCCATCAAAAACTAAGCGAATA 10419 37 100.0 39 ..................................... CAAAGAGTAAAAACTGCCAAAAAATGGCAGGTTTCTTTT 10343 37 100.0 34 ..................................... TTTCTTGGCTTACCATCATCGGTACAACAGGAGC 10272 37 100.0 40 ..................................... GAATATTCAATCAAAGAAGCAGAAAAGATTGCAAAGCAAA 10195 37 100.0 36 ..................................... ATTTTTTTGATACTTTTAGAATACCACCTAATTACC 10122 37 100.0 38 ..................................... TTGATAGACCTGAAAGTAAATTTGAGCGTCGTTATCAG 10047 37 100.0 35 ..................................... AGAACCAAAAACATGGCTATCAAATGGCGGCTTAA 9975 37 100.0 36 ..................................... TCCGCACCTATTTTGATAGCCTCACCAATTTTCCGA 9902 37 100.0 34 ..................................... ACGCCACTGCCATGCCTCACACTCGCTAGACAAT 9831 37 100.0 34 ..................................... ATCTAGCCGATAAGACCGAACCATATCAACGGAT 9760 37 100.0 34 ..................................... TACAATTGAAATCATAAAGGGCTCCTTGTGGTGA 9688 37 100.0 37 ..................................... ACCATCCTACTCATGGATCCTATGCAATTTTTGAAGA 9614 37 100.0 38 ..................................... CCGAAAGGTGAGAGGCGATCGCTCTTAAAGACTTACCC 9539 37 100.0 35 ..................................... ATTAAGCAGTTCAGCCGGGGTAATGATGGCATTTT 9467 37 100.0 32 ..................................... ATCTGGAAAAAAACCGATCAGCAAGCGATCGC 9398 37 100.0 34 ..................................... TTGTAATTAAACATTAATTACATTTATATGGCAG 9327 37 100.0 37 ..................................... AAATTTTTGACTACTCTGATTATATCGCAGAAAGTCA 9253 37 100.0 38 ..................................... AGAGCAAAAACTAATTAGAGATTTTATGTCACGGCATA 9178 37 100.0 38 ..................................... GCTGGTTTTAGAGGTTCATCATCCAACCCGAAAACGGA 9103 37 100.0 35 ..................................... ATCGATCCCTTTTCCGAGGGATACCTCCCATGATA 9031 37 100.0 38 ..................................... TTGATGGCCCCAAATGTCCCGAATGTGGGTCAAAAAAT 8956 37 100.0 39 ..................................... GTCTAGCAACCGATTCTGGTAAACCTGAAAGTAGATTTG 8880 37 100.0 38 ..................................... GCAAGCTACGCGGGGATACTTTTTTCTTACTTCCAAAT 8805 37 100.0 35 ..................................... ACCATTGCAAAACCCTACAACCCCGAAAACGACGC 8733 37 100.0 35 ..................................... TTCCTCAATGCGGATGACTTGCTTGCCTTCCACTA 8661 37 100.0 33 ..................................... AAAAATTGCTGACTTAAAGGATTGCATTAGACC 8591 37 100.0 34 ..................................... TGAAAAAAAATCGACAACTGCAAAGGGCGCTTGA 8520 37 100.0 38 ..................................... GCAGCCCTGTTGTAATTTGGCTGACAATTTTAGTACAG 8445 37 100.0 34 ..................................... TCCCAGTAATCCAATTATTTTCGCATCGGATATC 8374 37 100.0 39 ..................................... TATCTGGCTATCGGCTATCTGGCTATCTAGTAAAAAGAT 8298 37 100.0 38 ..................................... ACTCCTAACCGGACGCCGTAACGTAGAATTGCTGAAAA 8223 37 100.0 35 ..................................... TGCTAATTTCCACTGGCTTTGCTGGCGATCACTTT 8151 37 100.0 34 ..................................... CAGATTTTTTTCAAATCCCATGTTGACCAATAAA 8080 37 100.0 34 ..................................... CCTATGTCGCTCAGAATCGGTATGGCGTAAGGCT 8009 37 100.0 35 ..................................... TCGTGACTTAGCACTAACTCTCACCGAGCCTCACA 7937 37 100.0 34 ..................................... ATTTTTTGGCCTTCAATTTGCAATTGTTGATACA 7866 37 100.0 35 ..................................... AAAAAGAATTCATATAAAACCGATTCTATTTTTTT 7794 37 100.0 36 ..................................... AAACCGAATGTTACTCGGTAGACCGATTACTGTAGA 7721 37 100.0 34 ..................................... ATTCAGCGAGTGAAATACTAAATTACTCATAAAG 7650 37 100.0 35 ..................................... GTCTCCTTTTGGTCCTTGAATACCCTGGTCACCCA 7578 37 100.0 34 ..................................... TTCTGCGTTCTTCCATATCAATCATCCGCCGCTG 7507 37 100.0 36 ..................................... CAGCAATATTTCCCAGAATTTGCCAATCATCTGGAG 7434 37 100.0 34 ..................................... CACAAAACTCGCGGTATTGACGAGATTTCTTAGG 7363 37 100.0 36 ..................................... TGGAGAGACTGCATCCGCTTATAGGGCTGTTTGCTC 7290 37 100.0 36 ..................................... GCACTCTTTTGCCCGTAATTCTGACAGCTTATTCAG 7217 37 100.0 34 ..................................... TTGTGAGGTAGCAATGAAAAATCAAACTTATCTT 7146 37 100.0 34 ..................................... TCAAAAATAACTGGGTAAACAACCCAGCGATCGC 7075 37 100.0 34 ..................................... TAGAATAAGCATATTTAGGTTGCCTAATTATTGC 7004 37 100.0 35 ..................................... CCGGCGAAGGCACTGCCGGGAAAATCTCTGTAGAA 6932 37 100.0 34 ..................................... CCAGCTTTGGCGTATGGTGCAACCAACATATCAA 6861 37 100.0 35 ..................................... TAAAATTTTTCCTGACCACGTTATCGATCTGTATC 6789 37 100.0 45 ..................................... TACCTCATCTTCCATCTGTAATAAAATCATCTAATTCTTGAATTC 6707 37 100.0 34 ..................................... TACCTCATCAGCACCACCTCTAAAGCGGGTGGCG 6636 37 100.0 37 ..................................... TTGGTTGGCTTATGGCGTTGCATTCACTACGGTTCCT 6562 37 100.0 35 ..................................... ATTTGCCGATTCAATTTGCTGATTTAGTGCATTAA 6490 37 100.0 38 ..................................... GTCCCAATTTTCGATTGTCCAGAGTCCGTCCGCTGCAT 6415 37 100.0 37 ..................................... TGATTGCTAGAAAGATCGTGGCGCAGGTCACTGAACT 6341 37 100.0 35 ..................................... CCGCCTATTGAGCAAATTACAAAATTTCCATTTGC 6269 37 100.0 34 ..................................... TATTGTAGTAGCATTGCTACCGTCTGGACAAATC 6198 37 100.0 37 ..................................... TCGACTGATGAGCAAGCATCCGAGGGAATTTCAATCG 6124 37 100.0 113 ..................................... CGATACAACTGTGACAGATGGATTTACGCTTGGAAATGGCTTGGCAATGCCATGATAAAGCTGTGAAATTGAAACCGATACAACTGTGACAGATGGATTTACGCCCCGGTAGA 5974 37 100.0 35 ..................................... GGGTGTAGCTATTAAATTTCTGCCAGCTTTGATGC 5902 37 100.0 35 ..................................... GGGATTCAGTGGAGAATCTTGCATAATAAGGATTT 5830 37 100.0 35 ..................................... TTTGCCATCCTCAGCCCTGCCACGGTGAAATAATT 5758 37 100.0 35 ..................................... CACCGCAGGAAAAATCAGAGCCAACTACTCAAACA 5686 37 100.0 34 ..................................... TAATATCTTCTCTCCTTAATTAATTCTCTACCTA 5614 37 100.0 36 ..................................... ATTTATGGGGCCCGCAGCCGGTCTACCAATCCATTT 5541 37 100.0 39 ..................................... TTCCAATCGAATTTATGGGAATCCAAAAGCCCTGCCAAA 5465 37 100.0 35 ..................................... AGGCATTGGCCCGCATCCGGTACAATGCACCCCGA 5393 37 100.0 38 ..................................... GATGTGCTGAATGGCTAGATTCATCATTTCAGAAAAAT 5318 37 100.0 32 ..................................... AAGCCTTGGCCAATATCAAGTGACGCCTTAGA 5249 37 100.0 33 ..................................... CAACGCCTACGAGATGGTAAAGAGCCTGATTTC 5179 37 100.0 38 ..................................... ATCCGTTGTGATTGAAACCGAGGGCGTGTCAGCCTACA 5104 37 100.0 36 ..................................... GAGAGAATCCGCCGAAAGCTATCAGTAGCAAGGTTT 5031 37 100.0 33 ..................................... CGGGCTAATTCCTCATCAATGGCGCTGGTCAAC 4961 37 100.0 34 ..................................... ACAATTTTTGAGTATGGCACAATTTTCGATTTCG 4890 37 100.0 35 ..................................... CTCAGCAAGGGACAATTTTTGCAGGATTTTAAAAA 4818 37 97.3 39 ....G................................ TGTGTTTTCTGTCTCGTCTGGGCTCTGGGGTTCGGGTCC 4742 37 100.0 35 ..................................... GCTTGCCGACGATATATCGCCGTGAATGATTCGCT 4670 37 100.0 34 ..................................... GCAACCCAGCGGGGCAAGGCCCACCAGGAAAAGA 4599 37 100.0 36 ..................................... TCAAAAGGATCTAGAATATTTTGGGATTTCTACTTT 4526 37 100.0 36 ..................................... TTTTTTTTTTTTTAACAGCTTGCTAGAAAATATATT 4453 37 100.0 36 ..................................... AGGCCGGCGAAATTCCCTGCAAAATTTATCGGGGAT 4380 37 100.0 36 ..................................... GTGCGGCATTTAAGAAGTGTCAGGCCGGCGAAATTC 4307 37 100.0 39 ..................................... CCAATTTCCCTATATATATACATATATAAAAGGAGAGAA 4231 37 100.0 34 ..................................... GTTGATCGCTCTTTTCCTGATGTGCGGCTGTATT 4160 37 100.0 35 ..................................... GTGGTTGGTTGCGATAGGGCTGGCAAGTTAGGATG 4088 37 100.0 36 ..................................... CCATCGGCCAACTCAGCAGTACCATTGAATTAGCGT 4015 37 100.0 35 ..................................... CCCACTGGGCAGCCTTAGCCTCAGCTTCCAAGATC 3943 37 100.0 34 ..................................... GGCTAGAGACTACTGCTTTGCACCGGGGGCTAAC 3872 37 100.0 33 ..................................... TATTTACCTAAAATTAAATTTTTGGATGAATTA 3802 37 100.0 40 ..................................... TGACTGGAATCAAAACGGAAAACTGGAAAACTGAGAAAGA 3725 37 100.0 37 ..................................... AAAATCATCAACGGATGATGAATCCCGAACCTCTATG 3651 37 100.0 37 ..................................... CCAACTTTTGATTGGGACGGCTGAAACTCAATCCCCG 3577 37 100.0 35 ..................................... TTACGGATAGCTGATATGTTGTATCGGCTATCGGC 3505 37 100.0 37 ..................................... GTTTTAGTCTGTCATGCCCACAATCCCAGACTTTCCC 3431 37 100.0 36 ..................................... GCTTGTGTGGGCGATCGCTATCAGACTCACCCCATA 3358 37 100.0 37 ..................................... TTGGCGATCGCCCCAACCTTTAGGCGGTAATCCCGGA 3284 37 100.0 38 ..................................... GCAAAAAATGTTGGAGCAATCTGATAGAAATTATCAAG 3209 37 100.0 37 ..................................... TTCTCAGGACCTTCCGTGGCAATGATGTCGATCGCGC 3135 37 100.0 36 ..................................... TATTCTTTCTACGCTGCGCCGAAGGCTTGCTTAGTC 3062 37 100.0 34 ..................................... GGCCATCTCGAAAGCGATCGCCCGACTGAGAAAA 2991 37 100.0 36 ..................................... TAAAACTCATTATATTTTCTCCTTAATTTGATTCCA 2918 37 100.0 34 ..................................... GCTATCGCTCCATTTAAGTGTAGTTTTCTGATGC 2847 37 100.0 35 ..................................... TTTCCTGCCGCCTACGCCGGTCGCGGCCTAGCATT 2775 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================================================================================= ================== 158 37 100.0 36 GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Left flank : GGACAACCGGGGAGTCGTGTTTGGAAACGATATCTGAGTGAAAATACTCATGTTCCTGGGGCGGGAGTTGAGGTGATTCTGGCGGCTTTAGCCCAAGTTCCTCCCCCAGAGATGGCCGGTTTAACGGTATCAAATATTTGACAACGGTCTGAATCGGCTAGGTTATGGGGATGGGTGCTTATCGGTTTTGCGGTTGGTTATGGGCGGGGTATAATAGAGGTTGACCCGCAATCTGCGTCAGGGGATATTTGCGCGGAGGGGTGGGTGTAAAAACAGGGCAGGGCATTTTTTCCTCTGAACTGTTTATGGGGTCGAGGTTTGAGAGTTTTTGAGTCTCGAACCGATCCGCGCAAATCCTGAAATCCTTTGTGAGTGAGGGTTTTGCTTGATTCAGGTTTGAGGTCTGTTGACAAGTTTGGGGGCTTTGATGGTATGATGAAGTCGATTCGCGCAAATGAACCTGGAAAATTAAATAAATCAAGGGTTCCGAGCCCCGGCCA # Right flank : TGACCCAAATCACCAAAAAAGCGGGAGAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTCTCCCGCTTTTTTGGTGTTGCAACTATATTGAATCCCTATTAGGGATTGAAACGCAACAAAAAGCCCATGATTGGTGCTTCGATCTATGCGGTTGCAACTATATTGAATCCCTATTAGGGATTGAAACCAACATCAGGCAATTGACTGGATATTGCGGCCACGGCCAGTTGCAACTATATTGAATCCCTATTAGGGATTGAAACCTAAGTGTAAGCAAAAGAGAGAGATTCATATCACGAGTTGCAACTATATTGAATCCCTATTAGGGATTGAAACTTGGAATAAATGTTTATGTTCCTGAAGCTTACTCGTTGCAACTATATTGAATCCCTATTAGGGATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 62072-57074 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIUQ01000036.1 Planktothricoides sp. SR001 contig_118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 62071 36 100.0 42 .................................... GATTGCTGCCACTGCCAACCTTAAGCTTTACGTTTAGTTCTA 61993 36 100.0 35 .................................... GCGGCGGAAAGTCCAGTGGACTTGAAAAATGTTGC 61922 36 100.0 38 .................................... ATGACAGAAAATGAACAACAACTTTGACAATGGTTTTG 61848 36 100.0 39 .................................... TATCGGTTCACTGACAAACTGGTTAAAACTGGTTGACAG 61773 36 100.0 44 .................................... ATCGTTACTATTCAATCTACAATACCCACTTCTCGCTCTAACTC 61693 36 100.0 37 .................................... ACAGTGTGGTGGACCAATGGCGTAACAAAGCTGCCTC 61620 36 100.0 35 .................................... TCGGTAGTATCTTGTAGTGAAAATCGACTGGTGAC 61549 36 100.0 40 .................................... CCAGCCAAGAAAGATACGAGCGCGAATACAGTTATCCTAA 61473 36 100.0 39 .................................... TGTTCTCTCTTGCAGAGAACACCTTAGTGTTAAAGATGG 61398 36 100.0 38 .................................... TTGAGGTTTCACTACCTGAAGAGTCTAGTGGTAAGACT 61324 36 100.0 42 .................................... TGCCTTTGCGGGATTCGCTGTTGTTCTCCTAAAAGAAAAACA 61246 36 100.0 41 .................................... GAACCAACTGGCACCACGCTGAAAGCGTTGGCTAAGTTCAA 61169 36 100.0 38 .................................... AACCATGATTAACTATTATGTGCTAGATAAAATCGAAT 61095 36 100.0 39 .................................... ATTCTTAAGTTCGCAACCAAGTATAGTTATAAATTCAGG 61020 36 100.0 39 .................................... CCAGCAAAAATATCGCCTTACTGCGATTGACGTAGAAAA 60945 36 100.0 35 .................................... TCCACACGGTCTTTTGCGCGATCGCTATGAATCTT 60874 36 100.0 38 .................................... TATTAGGCCAGTCCCGGCTGTACATGAGACTTCGGGAA 60800 36 100.0 40 .................................... CGGGGAAATCGGCGTTCATCCATTACCCAAAGGCAGTGGG 60724 36 100.0 35 .................................... ACAAAATCCGTTTGTCATTCAATCATGGAAAGGCA 60653 36 100.0 42 .................................... CTCCTATATACCTGGGAGGAATGGGCCATCCCCGTTGTGGAA 60575 36 100.0 41 .................................... AGGAATGCGTAATACCAACAGTAGTATTTCATGTTTTCTTT 60498 36 100.0 40 .................................... CTGTCACCCCGGGCCGACGTACTTGGTCGGGTTCTAATCA 60422 36 100.0 35 .................................... ACCTGAAGCGACCACGCCATTGTTGTAAAGGCGAT 60351 36 100.0 40 .................................... ACAAAGTGTATACTTACACAGGAGGAATGTTTGGTGCATC 60275 36 100.0 37 .................................... GATCGCCCCCAAACGCTTCCTTGCCCCAGAATATCGA 60202 36 100.0 40 .................................... AAGAACAACGACCCAAACCTATCCTTAAAGTTCGATAGGT 60126 36 100.0 43 .................................... ATGACTGTTAACTACTTAGTATCAGCTCCTACTTCTTTCCATG 60047 36 100.0 41 .................................... CCCCTTGTTGGTATCAAGAAGAGAAAATAGAAGGGGTTATA 59970 36 100.0 38 .................................... TTCTCCTCACAGGACTTGAGAGCTCATCAAAGGGGTCA 59896 36 100.0 38 .................................... TTCGGATGACTCTACTAGCTCAAACCGTGGAGGAATTA 59822 36 100.0 51 .................................... TTTAGAAGTCCTTGCTACTTACCTAGCAAGTCATCCTGATGATTCCTATGA 59735 36 100.0 36 .................................... GGATTGCCGAAGGCAGATAGAACCTATTCAAATTAA 59663 36 100.0 37 .................................... ATTATAGCGCACTTCGGGTATCGGGGTGGACAGCAGA 59590 36 100.0 52 .................................... TTGATAGCGTACTGCCACAGCAGTATGGAAAAGGAGCAATCACAGAAGTAAT 59502 36 100.0 42 .................................... AAAAGTCCACTATATAGATAGACTTATATTTTTGCCAATCGA 59424 36 100.0 36 .................................... TCTACTACTTTACATTGACTTAAATACAAATTATGT 59352 36 100.0 42 .................................... TATCCTTCCTGAATGGAGTCAGAATGCTGACGTATTCGAAGT 59274 36 100.0 39 .................................... GGCTTTCCTTTCCACTTTCACGGGTTCTTACCTGAAGTG 59199 36 100.0 44 .................................... TCTATTGCTTAAACAGGCATCGTAGCTACATTAGCTACGATTAT 59119 36 100.0 42 .................................... AGGAGCGATCTACTTCAAGCCAGCCTAATTTGTAACCAATCG 59041 36 100.0 38 .................................... AATTAAAAGCCATTTATTATCTCGCCGTATTTTTGACC 58967 36 100.0 40 .................................... TGTACTTCACTCCGCTTGGTACGGCACTGATCAAAAAAGT 58891 36 100.0 43 .................................... CGCGAATCCGACCAGACCTTCTCCAGCTTTGCGAACTAATTTA 58812 36 100.0 41 .................................... CTTGTTGTAGCCGACACAGGTAATTACGTGGCCAGCAGTAG 58735 36 100.0 37 .................................... AGGAGTGCGGACTGCTTCAATTAGTACCACTCTATCT 58662 36 100.0 46 .................................... TAAATTCCGCGATCGCTTCTGTGTCCACATTCATATCCGCTTATAA 58580 36 100.0 36 .................................... AAGAAGCAAAAGCATTAGAGGCGAAAATAGACGAAG 58508 36 100.0 37 .................................... GGACTTAGAGAGCAATGGTTATCAAGTAATTAATTAA 58435 36 100.0 36 .................................... ATCGTAGGCATTTTCACGTTGAACTGAGCCTGAAGT 58363 36 100.0 42 .................................... TGTGGAAAAATGCTTTGCTTAAAGGATTCGATGAACTGGAAG 58285 36 100.0 35 .................................... TTCCAGATGGTACTTCCATTGAAATCAAAAAAGCA 58214 36 100.0 35 .................................... ATCAAAGTCAGGAGCTAGGGATGACCCTAGCAGAC 58143 36 100.0 36 .................................... TGTTATCTTTTTTCCAATCTAGACAGGCCATGTAAT 58071 36 100.0 35 .................................... CTCCTACTTTAATTGCACAGATAGAGGAATGTGGA 58000 36 100.0 37 .................................... AACAAAAAGGCATTGCTTTTGCAATGCCTTTTTGTTT 57927 36 100.0 38 .................................... TGTAACAGAAGCTAGTATAGTCGTAACGGAGACCATAC 57853 36 100.0 45 .................................... GTTCAGTCTCGTCTAGTCTTTCAAGTCAGCCGGTTAAAAAGTACT 57772 36 100.0 35 .................................... ACTCTTAAGCCCGGTATGCGTGTACCCTACAACTT 57701 36 100.0 40 .................................... TCTATAACGTACTTAGGAGAAAGACCAATGTCTAACTTAA 57625 36 100.0 38 .................................... TCTACTCCTAAGCCCTTTGCTGGTATGGCTAATGACGA 57551 36 100.0 38 .................................... AGAGGATTTTGCAAGGCGTAACTTTTCGCTTTGGTCTT 57477 36 100.0 39 .................................... AGCATTTATACACTTAGAAGAAAATAAGCCAGTAGATAT 57402 36 100.0 37 .................................... TTGACTACAAAACCCAGTTGTTAATCAAAACTTCGAC 57329 36 100.0 39 .................................... CATCTGGGCGGAACCCTCTATTTAGCATTTTATATTTTG 57254 36 97.2 35 A................................... TCGATATCGGAGTAACTTCTTCTGTATTGAGTGGC 57183 36 97.2 38 A................................... TCAGGACAAGTTAATTCGCCGCAATTGATGTTGAATTT 57109 36 97.2 0 A................................... | ========== ====== ====== ====== ==================================== ==================================================== ================== 67 36 99.9 39 GTTTCCATTCAATTAATATCCCCAGCGAGTGGGGAT # Left flank : GATTAAATTTCTGAGGATGGTCATGGCGTTTCCAATCAATTAGTATCCCCAGCGAGTGGGGAGTAAGCCTGTTGCACAAGTTTGAGTTTTAAAAGGGTGTCTTTGGAGTTTTCCAAAAGTTGAAGATTTAGAGCTTTTGTCGCTACGGAAGTCTCTGATTTTTTTTAGTTCTTATTTGCGGAGTCGAGGGGAGTCGAAGCCTTTTCGATTTCCGCATTAATATAAGACTTCGACTAATTTTGTCTTAACTGACAAATGATTTTGCCGTAACTTTTCGGCTTTCGGCTGGGGAATGCCTTTGCCTTTACTGCTAGAGCGTCAGGCTGGGGGTTTATGCGGTAGAGGTGCCCCCAACCATATATTACACGAAATCCACTCTTTTTATAGAGTCTCCATGGGGTGTAAACTCCCAGTTTGTTTGCCTCACCATAATTATATATTACGCGAAATCTACTCTTTTGTCAACATTAATATAAAACTCCCACTAATTTTGTCTTAGC # Right flank : GCTAAAATTATAACCCTTACCCAGCAAGATGTCTAGAGGCGGTTTGCGAGCCTCAGCAATTTTGTTGCTACAATTTTGCTAAACCTCGAAAAAAAAATCGCTGAAACCCTTACCCAGAGAGGCTGCGAGGTTCCCGACGAATTAGCTAAGTTACAGCGATTTTCCGTGAACCTCGCGGTAGTTACTTATTAGGTAGTTAATAGTTTATTGGTTTGTTTACAAACTTATAACAGCTAACAGAATCATTAATCAGCAGTCTCTAAATTAGACAGTTAGCAATTTACGGAGATTTTACTGAAGCATTTAGGCTGAAAAAAAGAGTGGCCGACTACCCGAAGATAGCCGACCGATTACCCCCTAGTAACTGTTCGGGGAATAATTACTTATTTTACCATATAACGATACGCCCAAAGTTACGCTGTGAAGGGTTGAAACTGGGTTGGGTGGCGATCGCATCGCATCTCAGTCTGGTTGCTGTGCTAAGTACCTTTCTGTGGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATATCCCCAGCGAGTGGGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 68865-57866 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIUQ01000024.1 Planktothricoides sp. SR001 contig_89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 68864 37 100.0 38 ..................................... ACCTATTGTGGTAGCGGGCTAGTCAAGGTGACTTTAGA 68789 37 100.0 38 ..................................... TGATCATCTCTAACGTGGGGAGGTGGCATAATGACTAC 68714 37 100.0 37 ..................................... TTATCTAGAATTGATCGAGGTTTCGATTGGGTCTTGG 68640 37 100.0 37 ..................................... CCCATTGAGAGGACAGATTCTAGGGGGGTGGGTGCGA 68566 37 100.0 38 ..................................... TTCTTTGGTGTCGCCTATACAGGGCTAGATTAGGCTAG 68491 37 100.0 37 ..................................... TCGCAAGGCTTCTCACGTCGTTGCAGTGAAGCTCGAT 68417 37 100.0 38 ..................................... TGACTAATGACATTGTAATGATATCCGCTTTATAATAT 68342 37 100.0 38 ..................................... CAGAGGGTAGGTTCATCGGTTCACGGGTTCCGGTAAAA 68267 37 100.0 49 ..................................... CCTGAGAGCGATCGCAGCCCATCTTTCATCTCTAGGCATTGCCACAAAG 68181 37 100.0 36 ..................................... CCCCTGATAGCCCTTGGGATACTCCGGTGAACATCT 68108 37 100.0 37 ..................................... AGTGAAGTAGTTAGCGTAGGAATTCAGCATTTTGTTT 68034 37 100.0 38 ..................................... TATGAAACTTTATTTATTGCTGACGCCATCATGCCGGA 67959 37 100.0 34 ..................................... GGGTGTATAAAATATACAACTCCATTTGTATCCA 67888 37 100.0 35 ..................................... AAATCTGGAAAATCCAGTTGCGGATTCACCGGATT 67816 37 100.0 34 ..................................... GAATTCTTCAAAGTGACTTAGTTCGTGAAAAATA 67745 37 100.0 36 ..................................... GCGACCGGATAACTCGATCGCACTCCTGGATCTAAA 67672 37 100.0 36 ..................................... ATTATGCCACCTCCCCAAATTCAGAGATGATTAAGC 67599 37 100.0 36 ..................................... ATTTAATTTTGGCAACCTCATTTCGTAAAATAGATA 67526 37 100.0 37 ..................................... GTTGTGGGCTGGTTTGGCGGAAACCCCAATAACGGGT 67452 37 100.0 37 ..................................... AGCGATCGCCTGTGCTTTTTGCAGCGCAGGGACGAGT 67378 37 100.0 36 ..................................... TTTTACTGGGACTTTAATTTTGTACCCACAGAGAGA 67305 37 100.0 38 ..................................... GACAAGATACTGCTGCCGGAATAACGAAAAAATCATCA 67230 37 100.0 37 ..................................... TACATCTACTCTTGATAATGTATAAATATTGTCGATA 67156 37 100.0 36 ..................................... TAGGTTTATTGTTGGTGAAAGAAAATCTCTTTCTCG 67083 37 100.0 34 ..................................... GAGATTATCGGTTACGATTCCGATTTCTATATAA 67012 37 100.0 36 ..................................... AAGAATATATTCTGATTGCTGACGAGGCGCACTATG 66939 37 100.0 35 ..................................... AACAAATTCGAGAACACCGCTGGTGGGATTAGAAT 66867 37 100.0 39 ..................................... ATTTAAAAGAGGAAACAATGGCAATTGAGTGTTGGTGCA 66791 37 100.0 34 ..................................... GATTTGAGGTGCATACAACACTAAATCCTTTTTC 66720 37 100.0 33 ..................................... TGGAGCGTTCACACCAAATGGTGGCGACGAAAA 66650 37 100.0 38 ..................................... GCCTGCGATCGCTCTTAAAATCAATCTTTTTCGGGATT 66575 37 100.0 35 ..................................... ACAACGAACTCCCATCAGGGAGGTATTTCATGTGA 66503 37 100.0 34 ..................................... AAAACTTTTTCAATTAAAACTTGTTTTTCTTCAA 66432 37 100.0 34 ..................................... AGAAGATGAGTTTTGCAACATCATTAAACTGAAG 66361 37 100.0 39 ..................................... AAATTGATGAGAATCCAATAAGCCAGCAAGCTTAAGGGC 66285 37 100.0 34 ..................................... TTACAGAAGTTGCTAGAGAATATCTAGCAACTCC 66214 37 100.0 34 ..................................... TTTTCTGTGAAGACTGCAAACATTGGGAAGCACG 66143 37 100.0 41 ..................................... GAGATAGGTCTGCAATGAATCGAGCGATCGGTGCCCTGAAA 66065 37 100.0 38 ..................................... GATGTTTTTGTGGTGTTTATGAAAAAAAAGAAACTTAA 65990 37 100.0 35 ..................................... TGCGATCATCGATTCGCAGCGGCAGGCCAGCGGCG 65918 37 100.0 36 ..................................... TCAGTCCTTTCCCGATGATTTCGTGCTACCAAAGAA 65845 37 100.0 36 ..................................... TGCGATCATCGATTCGCAGCGGCAGGCCAGCGGCGG 65772 37 100.0 38 ..................................... CTAAGATTTTTAAAATATTTATCAATGGAAGGCTGTAA 65697 37 100.0 37 ..................................... GCGCCATTTACCCAAGCCGAACCTCCAACACCATAAG 65623 37 100.0 38 ..................................... CTGGATGTCTGTCGGCCGACTTCCACGCATAATCATCG 65548 37 100.0 35 ..................................... AGGCAAGTCCGCCGGAAGCTGTGCAAGCTATACCC 65476 37 100.0 37 ..................................... AAAAATCGCCACCAGTTCTGAGTCTGGTTCCTGAAAT 65402 37 100.0 37 ..................................... CCTTTTGTCGGTAGTGTTGTCGGCGGGACAAATGATA 65328 37 100.0 37 ..................................... AAAAAGAGCTATCAAGAGTATTCAAACTTTTGATTTT 65254 37 100.0 37 ..................................... TCAATAGCTAATTCGATAGATTTCTCGTAGCAATGGG 65180 37 100.0 34 ..................................... AAGTTTTCTATTGGAGTTGAACCAGTTGGATCAC 65109 37 100.0 37 ..................................... GATCGCTGGTTTCGGGCGGCCCTGGAGAGAGCCGGTC 65035 37 100.0 37 ..................................... AAATGGAGTGGGAATACAATATCACCATAATACGAAG 64961 37 100.0 38 ..................................... TGCGGTCCGTACTGGGTCTTTCGCTGGAGCCGACCGAA 64886 37 100.0 36 ..................................... TTCCTGGATTCTTTTTGGCAGCGGGCGATTTTATCT 64813 37 100.0 35 ..................................... ATCCCAATCAAAATCAGAAAAGCTGGGAAATTCTT 64741 37 100.0 35 ..................................... CGATCGCTCCGGGAAGTACCCACCCATCACCTACT 64669 37 100.0 35 ..................................... CAAAGGGGTTGGTGGTGCTTGAGTTGCCGTATAAC 64597 37 100.0 37 ..................................... AAATCTGTGTTTAGCGCTTGCGATCGCCTTTATGCAG 64523 37 100.0 37 ..................................... TCTGTGTTGGCTCATCAGCCGGGGCTGTCTGGATTGG 64449 37 100.0 38 ..................................... CGATCGCTGAATGAGAATGGTCTATAGCTGCATATTCT 64374 37 100.0 34 ..................................... ATCTGGCAACTCAACCACGACCAAACAATTTGGG 64303 37 100.0 36 ..................................... TGGGATGAAAGGGCTGGGGAAAAGATACCCAGATTT 64230 37 100.0 37 ..................................... TGATTCGGTGCTACTACACCCAGGGCGATATCGCCGT 64156 37 100.0 36 ..................................... GTTTTCATCCTTAAATCCAAACATTTGAAATACATT 64083 37 100.0 35 ..................................... GTGAATCCAATCAACCCTGCTGAACCTGGAAAGCG 64011 37 100.0 36 ..................................... CTGGCGACAACGATGGGAACCTCTACCTAGGAGCAA 63938 37 100.0 35 ..................................... CGAAAGTCAAAGTCGTCTATATTTTTGAGAATATT 63866 37 100.0 37 ..................................... CTGGTGGCTAGACGACGCTGATAAACCGGGAGATATA 63792 37 100.0 32 ..................................... TTTTTTCTAGAAACAGTTCATAATCTTTGATC 63723 37 100.0 38 ..................................... TCACCGCTAGGTAATTGCGTTTCAGGAGTGATTGGGTC 63648 37 100.0 33 ..................................... ACTATCTTCATATTTAATGACGCCATCTGCATT 63578 37 100.0 36 ..................................... TTCGCTCATCTGTCACTTGCACAATTGCGTGAAATT 63505 37 100.0 36 ..................................... AATAAATTTATTGGCTCATTTTTATCAGCAAGCTTT 63432 37 100.0 36 ..................................... ATAATGTTAGGAGCGGGTGAATTATCAACGATCGCG 63359 37 100.0 37 ..................................... AGCTTCACTAAATGTGTATTGAGAAATTAACTGCTCT 63285 37 100.0 37 ..................................... GAAGTTTCACCTTGTAGGGTACTGCAACCGTTAAGTT 63211 37 100.0 37 ..................................... CAGTTCTTCAATTGCCCCTTGAACGGTGACGGCGCTC 63137 37 100.0 39 ..................................... CCCAGCAAAAAAAACCATGCCTCGCCACCCGGAAGCGCC 63061 37 100.0 38 ..................................... GGGGCAGTGCGATCGCTTTCGGAAAAAGTGCGAGAAAA 62986 37 100.0 39 ..................................... TTGAAATGCAGGATCTTGTTGGATCAATGCTCCAATTTT 62910 37 100.0 45 ..................................... ACTTTTATTGCTGCTTTGTATTGGCCTCACCAGTTTAAAAAACAA 62828 37 100.0 37 ..................................... ACTTTTATTGCACGTTTGCAACCGACGCCGCTCGGAA 62754 37 100.0 38 ..................................... TCAATCTTTTGGAAGTTTGGCCGCAGGAACTCCCGCAG 62679 37 100.0 37 ..................................... GCAGAATTAGAAGAACGCCTAAATAAAAAATTAGGTG 62605 37 100.0 39 ..................................... CAGTACGAGGATCTAGCTAAAGTTATTAATGCTTTTGGC 62529 37 100.0 39 ..................................... CCTGAAGTGATTTCTGATGTTGATAATCAAAAGTTAGCT 62453 37 100.0 37 ..................................... GGTAGGCCAATAGAATATACAATGGTGCATTCCTTGA 62379 37 100.0 34 ..................................... GGGCACGGGCAAACTCTCCGCTCAATGAGTATGA 62308 37 100.0 36 ..................................... TCTATCAAATCGACGATGACTACGGCGGCTCAATCA 62235 37 100.0 39 ..................................... CGGGTTCGGGTTCGGGTTCGGGCTCCTGGCATTCCGGGG 62159 37 100.0 37 ..................................... GAGACTTTCACCAAGCTTCGCAAAGCTAAACCAGCGG 62085 37 100.0 38 ..................................... CTAAATGAATTAGGCTGCTTGCCAATTACGACCCCAGA 62010 37 100.0 37 ..................................... AACCTTGCAACGTAGATGTATCAACCAAATTGCATAG 61936 37 100.0 34 ..................................... CACGCTTCGCCGCTGCCCCACCCTTCGATCGCTT 61865 37 100.0 35 ..................................... TTACCCGTGGATCGAATCGATCTCGCCCCAGTGGG 61793 37 100.0 36 ..................................... AATTCGCCGCATTGTTTCCAGCGCCTTATTCTCGAT 61720 37 100.0 45 ..................................... GACGCCTTTACTAGCGATCGCAAAGCCAAACCAGCGGTAAGCGCG 61638 37 100.0 38 ..................................... AGGTATTTTGCAATTTTCCCATCAGGAAACTCAACCGG 61563 37 100.0 36 ..................................... AAGTACAATAAGGTATTATTCCCAGATACGGCAAAA 61490 37 100.0 39 ..................................... GAAGCAATGGGATTGATTATGGCCCTATTGGATGTAAGG 61414 37 100.0 35 ..................................... AATGCAGCACAGAAAGCCGCGCTCAATAATTTTTA 61342 37 100.0 36 ..................................... AGAATCAGCGGGAATCTCAGCGGGAATCTCAGCATA 61269 37 100.0 36 ..................................... TTAAGGCATCTAATACGCCAAGTATGCGGGGAGTTG 61196 37 100.0 37 ..................................... TCAAAATCATTTCCTAGTTGCGTTTGCTTGACAAAAA 61122 37 100.0 36 ..................................... CAACCAAATGAACAACAGGATTTTTGCGATTACCTA 61049 37 100.0 37 ..................................... GCTGGCGTCTTTTGGGCTGACCACGCCAAACTTATTG 60975 37 100.0 37 ..................................... AAATTGCCCATGCTAGATTGACAATTTGACTGACAAA 60901 37 100.0 37 ..................................... CGATTCTGGTATTTTTTCCAGGGCATCGGCTAATGCT 60827 37 100.0 37 ..................................... TAGCACTAGCAAAAGTTTTAGGACTTAGGGAGAATGA 60753 37 94.6 37 .............A..........C............ CGCTTGTTATCGGGCAGGGGACGACACCTTTTATTGG 60679 37 94.6 35 .............A..........C............ ATGGGAAAAAGACGATTCGGCCCGTGCGTTCTGAC 60607 37 94.6 37 .............A..........C............ GATTTTCACCTACTGGAAGGAAGCTTGTAAGCGCATT 60533 37 94.6 36 .............A..........C............ GGAACCGGGCGATCGCATTCCCAAATAGGGGAAATT 60460 37 94.6 38 .............A..........C............ AAAAAATACGCACAGGAAATTTACAAATGGCGACAAAA 60385 37 94.6 34 .............A..........C............ CCTAGCTCGGTACAGGTGCAAGGCACATCTCCCT 60314 37 94.6 38 .............A..........C............ TAATCTGTTTGATTTTTCCCGTGGCCAAATCAATTTCC 60239 37 94.6 38 .............A..........C............ TTTTTTGACTTGTGACGAATCGGGTGACGGGTCCGTGA 60164 37 94.6 36 .............A..........C............ ACGAAGAGTTTCTTGATTGGTTCTCGGAAGAAAGTG 60091 37 94.6 39 .............A..........C............ GAATCGCTGGTAAGCCTGGGAAAAGTTTCTGAATACTTG 60015 37 94.6 34 .............A..........C............ ATGGCCTCGGCTCTTTTGCCGTAGTGGGCTAACT 59944 37 94.6 34 .............A..........C............ GGAAACATAAATAGTTTGTGCTGGATTAGATCGA 59873 37 94.6 36 .............A..........C............ TTTTAAAATCTGAAAAAAAACCAGCCAGCCATTACA 59800 37 94.6 38 .............A..........C............ CAAAAGCGCCTGCCACAAGTATTCACATAGCTTGGCAG 59725 37 94.6 37 .............A..........C............ AGTCTCATCCCAGATTTCGGCTCGTCCGTGGCGGTTA 59651 37 94.6 37 .............A..........C............ TACTTGGGCGTTTTTAGATAGGTCAAAAGCAGAAAAA 59577 37 94.6 34 .............A..........C............ AGATGCAGTGTCCCTAGCGCTAACCGGATGGAGA 59506 37 94.6 34 .............A..........C............ GAGTCTTCCGGTTTGATTTGCTTGATTTTTCCCG 59435 37 94.6 35 .............A..........C............ ACCGAATTCTTTCGATTCAAGAACGGAAGCAAGGG 59363 37 94.6 35 .............A..........C............ TTAATCGCTGTATCAAGAGCATCGTTAACTTGATA 59291 37 94.6 34 .............A..........C............ AGCATTAAGCAGGGAATATTAGGGAAAATCAATT 59220 37 94.6 36 .............A..........C............ CACACTGAAATGAAAAAGCCATTACTTTTCTACTGT 59147 37 94.6 35 .............A..........C............ TTTGAAACACAGCCCGAACAATCCTGACAATAACA 59075 37 94.6 35 .............A..........C............ ATTTTCCGAGGGCTGAAACTCCGAGAAAAACTGCT 59003 37 94.6 35 .............A..........C............ GCAAAGGTGCGGCGAAAGCTATGCCAAGAATACCC 58931 37 94.6 35 .............A..........C............ GAATTTGCTGAAAGCGGGTGTGTAGCCATGCGGAC 58859 37 94.6 35 .............A..........C............ TTTTTCAAAGAAAAAATCTAAAGGTAGGGGGGGTT 58787 37 94.6 44 .............A..........C............ AAATTTAGCCTTAAATTTACACAATGCTTTTAGCTTAAGCACTG 58706 37 91.9 37 .............A..........C.......A.... AATTCGCACCGATACCGCTGCTTTTTGCCAATAAATT 58632 37 94.6 38 .............A..........C............ GATTTTCGACGACTCTCTGGCATCAATTATGAGTGAAT 58557 37 94.6 37 .............A..........C............ TTATCTAGATATGTGTAGGATATGTCCCCCACGAACT 58483 37 94.6 37 .............A..........C............ TTCAGCAAATCGAAAGTCACCGAGTAAAAAATTACGA 58409 37 94.6 34 .............A..........C............ AGGTAATACTAAATTACTGCAATCATCTGGCTTG 58338 37 94.6 35 .............A..........C............ ATAAATTCATCTCCTCCTTTGGAACAAATTTGGAT 58266 37 94.6 35 .............A..........C............ TTTAATTCTTCTCAGATTAAATTTCAGTTTGACGA 58194 37 94.6 35 .............A..........C............ GCCAACCTTGACTTTACTTAAAAACGGGGTGAATT 58122 37 94.6 35 .............A..........C............ AATTACAAAATGACTCAAGCAAAAGCTTTGGCCAG 58050 37 94.6 36 .............A..........C............ CGCGATTGAAGAAGACTACACCTTAAATTAATGAAA 57977 37 94.6 38 .............A..........C............ GATGATTTCTTGATCAGCGTCCGAGCGGTCAAACTCTG 57902 37 94.6 0 .............A..........C............ | ========== ====== ====== ====== ===================================== ================================================= ================== 150 37 98.5 37 GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Left flank : ATGTTCTCTGAGTGAAACTGAATATGCGAAGTTACGGGCAAGATTGAGTAAGTTGATTAAGTCAGAGGAGGATAGTATCCGGTTTTATTTTCTTTGTGGCTGCTGCCAGGGTAAAATAGAACGAATTGGGGGCGAACAGCCAATGGATACGACGGTGTTTTTTGCCTGATTCCATGACCGGCGCCCTGGAGTGGCTGGCTAACCGGCTTTCCCGGAAGCTTCGGTTTGAGGATGAGATGAAGCGGTATTTTGCGCGGAGGGGTGGCTGTAAAATAAGCCCAGGGGATTTTTTCCTCTGAAGCCTTTACAGGGTGAAGGTTTGGGGCTTTAGGATTGGTGAACCGATTCGCGCAAATGCTAAAACTCTCTCCCCGCTTAGGTTTCCCCTGATTCGTGTTTGAGGCATATTGACAAGTTTTGGGGTTTTTATGGTATGATTAACTCGATTCGCGCAAATGAACCTGGAAAACTAAATAGATTAAGGGTTCCGAGCCCCGGCG # Right flank : AACGATCGCACTTATTTGGGCGCTACGTCCGATCGCCCAAGTAAACCTTAAAATTGTAGCTTTTTAAAATTGGTCAAATAGTCGGTTTTAACCGCCTGTAGGGGTCAACGGCCGTTGACCCCTACAGGGATTTTAATCCCCGCCGAATTTTAATCCCCGCCGGATTTTAATCATCGCCGAATTTTAATCATCGCCGAATTTTAATCCCCGCAATCGTCGGTTAATTGCGGGGGTACATAAACCGCCAGAGGTTAAAACCTCCGGCTAATAGCGCAAGTCGGTTAAAACCGACTCTGGATTATTTGGAAATTGGTAATAGTATTTACAAAACATTATGCAATTTTGGCGCTACATATCACCGTCTAAATAAACATTAGAATTGTAGCAATAGGTTGTAAAATTGGTATTAAATGACTAATTTTTTTTTAGGTTTATCCGCAAATTTCTGCCTAAATGAACCCATTTTAGTAATTCCCATACTCCCTTTCATTTGATTCAAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAACTATATAGAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 61-4191 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIUQ01000117.1 Planktothricoides sp. SR001 contig_229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 61 36 100.0 36 .................................... CAATTTAAATTTAGTCCAATTAACGAATGATGACAA 133 36 100.0 35 .................................... CTACCATTTTATCAAGTATCCTCCCACTTCCATTA 204 36 100.0 39 .................................... CTTCGATTATTTTGTCCAGTTTGCTGCGTTGGCTTTCCG 279 36 100.0 39 .................................... CTAAATCCCTGGAGAGGGTGTAGCCCAGTTTCCGCAGGC 354 36 100.0 36 .................................... CAACTTTCGCTTCTTTAGTTGGCTGTTGGGCGCGGG 426 36 100.0 35 .................................... CGGGCGGGGGCACACATCGAGGCGGCGATCGTAGC 497 36 100.0 36 .................................... CTTCCACTTGGGATTTGAAGAGATTAATCATCTATT 569 36 100.0 38 .................................... CATTACGGAAAGTGTACGCTGCGATATGTGCGAAACGA 643 36 100.0 36 .................................... CTCCATTATGGAAACAGATAATTGCTGGGCATTATG 715 36 100.0 37 .................................... CGGATAAGAGCTAACCCAATTTCTGTAAGATTCCGCA 788 36 100.0 38 .................................... CCAGCTACCAGACGAATGTTATTACTTTGAATTTAAGC 862 36 100.0 39 .................................... CACAAACTCATTGCCAGTGCCATTAAGTAGCTCTACATG 937 36 100.0 40 .................................... CATTGAGTAAATATTTCAATCGTGAATGATAGCCCATTGG 1013 36 100.0 35 .................................... CCGCCCTGGATATTGACAACGAAAGGGGGCGCGAT 1084 36 100.0 40 .................................... CAAGGTTGCGACGCTGGCTGTTCGGAATCAGCGCGTTAAG 1160 36 100.0 37 .................................... CACTATGCCCACCTTCACTCCATTTTTGGAGATACCG 1233 36 100.0 36 .................................... CGATTTTTTAATCAATATTAAAGGTAAAAATTAGCC 1305 36 97.2 35 ...........................T........ CTGAGAACGAGATTTTTGTCCCCGACTCGCCTTTT 1376 36 100.0 36 .................................... CTCAGACTTTCTAGGACGTGCCATATAACCTACCTA 1448 36 100.0 36 .................................... CGGCGGTACATTGCCGTAAACGATGCGCTTCCCGAG 1520 36 100.0 38 .................................... CCTAGTTAGTCGAGTGGTTGGCTTCTCGCCTACGCCGG 1594 36 100.0 37 .................................... CAACAATTTGAGGATGGAACTCATAAGGAATCGGAAG 1667 36 100.0 37 .................................... CTTGGATTGGGTTTTGGATTGGGTTCCAGTTCAGGTG 1740 36 100.0 36 .................................... CTTCACTGAGCGCTTTAGACCCCAAGAAAATTAGCG 1812 36 100.0 36 .................................... TATCGATGTATAGTGGCCACAAGCTCATTGTTCCGA 1884 36 100.0 38 .................................... TCTGCTCAATGGACCCTGACTCGCGAAAGTCGGACATT 1958 36 100.0 37 .................................... TCTGACGCATCTCCATATTGATTAGAGAGATGCTCCA 2031 36 100.0 38 .................................... TATTGAAGGTGTTAACCAGTTTCTTGCCGATCATCCAA 2105 36 100.0 38 .................................... TCATCTTTTCCCATTTCTAGAGAAAAGATTAGGGCTGG 2179 36 100.0 37 .................................... TATTTCAATAATCAAACCATACTCATAAGATCGGCTG 2252 36 100.0 37 .................................... TCTACGCGGAAATCGCTGTAGCCTTTGCTCTGTAGTG 2325 36 100.0 40 .................................... TTCTCGATCGCCTCAAAATCTGCCACGGTTTCCAGATTGG 2401 36 100.0 34 .................................... TTTATGGCTTTCTCAGCCCACAACCGCATCCGCT 2471 36 100.0 40 .................................... TAAGTAATTGATTAGACTTTTGCTTTATTTTGTAATTAAA 2547 36 100.0 35 .................................... TAACGGTGCCATCAGTGAGGCATGAAACCAGACAG 2618 36 100.0 35 .................................... TGATTTCATCCGCCATTGGCGCTAAATTCTGCAAT 2689 36 100.0 36 .................................... TCACTGATGCACATCGAAAATTTAAGCTAGTCATTG 2761 36 100.0 37 .................................... TGGCGGAGCAATTACCGGCATCGTGAATCCCTATGGG 2834 36 100.0 36 .................................... CCTAGGGATTGATGCCGGTGCTGTTTGTCTCTTTGC 2906 36 100.0 37 .................................... CCGCCAAGTCGATCGCACCAATTTCCTGAGTAGGCAG 2979 36 100.0 38 .................................... CAAGCGAGACATCTGGAAAAAGAACCCCTACAGCAGAG 3053 36 100.0 36 .................................... CTTTATAGCGAGATCGATGATTTAGAAGGTTTGTTT 3125 36 100.0 41 .................................... CCGGATTTATCCGCCAGATGCCCGTGATAGGAACCCACCAG 3202 36 100.0 38 .................................... CCCGGTTAAGACTAGATGCTCTAGAAAGTCAATTTTGA 3276 36 97.2 37 A................................... CTCGCCTTGAGTGTAGTAGCGGCGAACCAAGCCCATC 3349 36 100.0 39 .................................... CAAGTTCGCCAGCGACATTCAACCACGGGCCTGGGGGCG 3424 36 94.4 39 ..........C.............C........... CAGATTTGCTCAATGGTATAGCTCCAAAAAAATTATGCC 3499 36 94.4 37 ..........C.............C........... CAGTGCCACCAGTTGCGTGGGTTTCAGCGTGTTTCAA 3572 36 94.4 35 ..........C.............C........... CGAACCACCTTTGAAGGATTTCTGTAGTGTCTTTG 3643 36 94.4 37 ..........C.............C........... CGTTGTTTAGAGAAAATTATGGTGACTGTTGACATTC 3716 36 94.4 40 ..........C.............C........... CGCAAAAACCCCTACACCCTTGGCTACTGTGGGTTTTGGG 3792 36 94.4 36 ..........C.............C........... CTTGAGCGATGTAGAGACAATTTTGAATGCTTTTGA 3864 36 94.4 39 ..........C.............C........... CGCAAGCAACCAAAGAGCGAATCGCATCGCCAATCAAAG 3939 36 94.4 36 ..........C.............C........... CTTCTGCGGCCACCTCACCGAAATAATTGCCTAACC 4011 36 94.4 36 ..........C.............C........... CGCGACCGGAGCCTCTGGGTGAGGAAGGGGCTTTTT 4083 36 94.4 36 ..........C.............C........... CATAAATTACACCATTAATCGAATCCCCCAACCCGC 4155 36 91.7 0 ..........C.............C.........C. | A [4187] ========== ====== ====== ====== ==================================== ========================================= ================== 57 36 98.8 37 GTTGCAACTATATTGAATCCCTATTAGGGATTGAAA # Left flank : TTGAATCCCTATTAGGGATTGAAACCCCTCGGCAGCCGATACCGCGTTGATATAGACCCTG # Right flank : TCTCCGAAATAAAAACTATGCGGGATGATTTATGGTACAATAGAATTTTAGCGAGGATTATAGATGAGTAAATTAAAAGACTATCTGGACAAAAATCCCCAAGAAGCAAAAAGGCTATTAGGGATGGAATATGAGCAACTTATAGAACTGATTCAATCCGCGCAGTTATTAGAGGAAAAAATCCGAGAGGAAAAAGAAAAAACTAAAATCAGGTTAATTAAAGGAGGTGGGGGGCGTCGCCAGAAATTATCTGTAGAGTCACAAATCTTACTAGGGCGTGTCATCAATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTATATTGAATCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 7235-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIUQ01000045.1 Planktothricoides sp. SR001 contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================== ================== 7234 36 100.0 39 .................................... CGTAACAATCAAGAATCTTACAATAGTTGCTAAGTCAAT 7159 36 100.0 38 .................................... GCATTGTTTTTTACCTCGATTAAGTTGAATTTTCCCTA 7085 36 100.0 39 .................................... AAATCGTTGATCGGAGTATTTGTTTCAGCGTGTTTTAGA 7010 36 100.0 40 .................................... AATTTCTACGTAGCCGTCATCATGGAAAAAATAAAATTCT 6934 36 100.0 38 .................................... TCAACGGGGGACATCCCGCTTTTTAATGCGTGACTGAT 6860 36 100.0 39 .................................... TATCCCAAAATCCACCCCACCAAGATTTGATGGTGTCAA 6785 36 100.0 35 .................................... ATTAGAGAGAGGTTTGGCTGAAAAAAATGCTAAAA 6714 36 100.0 40 .................................... ACTTTTTCGTTCAGGACAATCTTGTTCATAATCTTCTCCT 6638 36 100.0 32 .................................... TCGAATACGATACCATCAAGGGAATCTAGATT 6570 36 100.0 38 .................................... CATAATACTGTTCTGTTCCCTTGCTTTGTACTACAATT 6496 36 100.0 40 .................................... TTAAGGAATTAAGGAATAGCTCTTATATTCAAAGAATTTT 6420 36 100.0 38 .................................... ATTGATGATTAACGTTTAACTACACGGAAATATTTAGA 6346 36 100.0 38 .................................... AGATACTTGCATTGCCTTTCTCCTAAGAGTGTACTTCA 6272 36 100.0 41 .................................... AGATATTGGAGAACTTTTAGGATATTCTCGTAGTAAGGGGA 6195 36 100.0 40 .................................... ACACATAAAGTAATACTTAAGATTATGGGAAAAACTAAGT 6119 36 100.0 34 .................................... AGGGCTATGGTACGTGAATTTGGATTTTGAGATT 6049 36 100.0 40 .................................... CCTTCCGGGGCTTGACCCTCAATCATCTTCAATAGTTGAA 5973 36 100.0 40 .................................... TACACATTTAAATTACAAGTACCCTTTCTAATAACCCTTA 5897 36 100.0 34 .................................... GAGTCCAAAAGGCTCGGTTTTCATTTAACTTAAC 5827 36 100.0 39 .................................... GCCTTAGCTTGAGAATTAATTTTGTTGGAAGCATCAACA 5752 36 100.0 36 .................................... CCAGTGAGGTTCCCACAGTGGAGGATATATACTCCT 5680 36 100.0 36 .................................... ATACTTCTCCCTTAAGGATACAAGGGGAAGACCCTA 5608 36 100.0 43 .................................... TCGACATAGGCATCATGCCGACAAGCTGGAGTACTGATTAACT 5529 36 100.0 43 .................................... TTAAGTAATGCGGTCTGCTTGTCACCCGTGTTCGGATTTGTTA 5450 36 100.0 45 .................................... ACTCTATATAGTCGTTGGATTTTGCCGTTAACCCAGGAACCGATG 5369 36 100.0 39 .................................... CGTTAGTGGACTGAGGGAAGTTAATAGACATGATTGATT 5294 36 100.0 43 .................................... GATAAGGCTATAGCCCTATCTCAATAAATCTTATATAGGATGA 5215 36 100.0 58 .................................... ATATTAATTGATTGGAAACTTTGCTTACCTACCAAAAATCCCCTCTTGAGACATAAGA 5121 36 100.0 41 .................................... AAATTCGCGGAAATCGTTACTTTTCCATAGTTCGTCTTTAG 5044 36 100.0 35 .................................... AGTAATCTGAGGCATGGTGAACGAGTGAGTCGATA 4973 36 100.0 40 .................................... CCGAGACCTGAGACCCGGCCACGGATATCACTATCCCAGC 4897 36 100.0 44 .................................... AGTCCAAAAGGCTCGGTCTTTATTTAGCTTAACTAAGTCGCTTT 4817 36 100.0 40 .................................... TCACCGTTCCCGGTGAAGTAATGGGTTACCCACTCTATTA 4741 36 100.0 43 .................................... AGTAAAGCGTTAAACATGGTCTTGATTCTCCTAAGATTTTTAC 4662 36 100.0 37 .................................... CTCCTTTTCCACATACCTCAGTGTTCAGATATAGGAG 4589 36 100.0 34 .................................... CTGCATTAAGTAAGCGACCATTGTGAAGAAGCAT 4519 36 100.0 47 .................................... ATTGTCTCCGGTGTATCTAAATTGAGATTCATTATCAAGTATTTATT 4436 36 100.0 43 .................................... GAGTAGTTACCCTTTACTTGTATCCCATCAATCTCTTCAATTA 4357 36 100.0 38 .................................... CAGCCGTCTGGGAATTCCACCTCTAGATTTAGGTAGGT 4283 36 100.0 42 .................................... AGATTTCATAGATTAGAAAGTAGTAAATCTTAATTACTTACA 4205 36 100.0 38 .................................... TCCATACCTTCCTTGATAGCTTTAATCCATTGGGTGAA 4131 36 100.0 39 .................................... AACCATTCCAGTTGTGTTGACCTGGAATAAAGCGGAACT 4056 36 100.0 38 .................................... AGTGGGACAAGCCTGACTTGGAGATTTCTAAGTCGGTG 3982 36 100.0 38 .................................... TCAGTTTCATCGTTCCTTGCGTTGATTGATGCTATTAA 3908 36 100.0 48 .................................... TCACGGAATAAGGCATCGAACAGTTGTCTTCTAGGTAGGAAATACCGA 3824 36 100.0 37 .................................... CATAGAGAGCGTTATTGTTAAGCGACAGCATCTTCCA 3751 36 100.0 40 .................................... TGAACTGTCCGTTTACTGGGGTCAGACCGAAAGGCATAGA 3675 36 100.0 38 .................................... ATATGTCCCCATTTAAGGGTTCCCTCTTTAGGACCTAT 3601 36 100.0 38 .................................... GCATCAAGCATCCCTTAGCTAAACGGAAAGAGTATAGT 3527 36 100.0 41 .................................... ATAGGTTCCCGGCTTGTGACGGGTTTAGCTACATTAAGACA 3450 36 100.0 39 .................................... TATCTTGGTATGAATACCCGCTTTCCGAGGGAACCCAAT 3375 36 100.0 39 .................................... AGGCACCTATCGCCATGTAGGAATTCAGACGACTGGATT 3300 36 100.0 38 .................................... TTCCGCACCTTTTAGGCAATTTGTTAAGTCTGGATTGA 3226 36 100.0 41 .................................... CGGAATCGAACCGGCAGCGGCATCCACTATGCGCGATCGCG 3149 36 100.0 39 .................................... TGCATAAAGCACTAACCCCTTTTTCACCCAATCAGGTAA 3074 36 100.0 44 .................................... AATTGCGGCGGCTTCCACGAACGGTTCTCTATATCCTTACCTAG 2994 36 100.0 37 .................................... GTGAAAGTGGTGAGGAAAGCCTCCCGGGTACCTACCT 2921 36 100.0 44 .................................... CCTCTATTTGTTCATTAGCTTTTTTTGCTTGGGTTTCCTGATAA 2841 36 100.0 41 .................................... CGCCCGGTTCCGACCCCGGCAAGGCATCCAATATGCGCGAT 2764 36 100.0 41 .................................... GTTTCAATTGTTGACGGCTCGCATTTACATTTTTTTGCTGC 2687 36 100.0 39 .................................... CGCCAAACTTTTTCGCTTCAGCCAATTTTTTGTTGAATT 2612 36 100.0 39 .................................... GAACCGTTCTCACTGTATTGGATGCCGTTTATACGGCAT 2537 36 100.0 37 .................................... TTGATTTAGGGGTTTTTAGTGCTGGCTAACTCGGACT 2464 36 100.0 39 .................................... TCATCACAGAAAAGCAACCCGCCAAAGTCGCGGCACGGG 2389 36 100.0 44 .................................... CTTGTGTAGTTTTTCGATTTTGTATGGCTTGGACATTATTTTAA 2309 36 100.0 41 .................................... CAGGGCTGTGGTACGTTGGACTGGGACTTGAGATTGAATGG 2232 36 100.0 39 .................................... GGGGCCCTCCTCCATTAATTCTACCCAGGAGCTATAGAA 2157 36 100.0 39 .................................... CTTGATATACTCCGTTGACTTTAGAGCCTCCTATCTTAA 2082 36 100.0 39 .................................... ACTCCATTCAGGAAGGATACCCTCGCCTTCTAAGAGTTG 2007 36 100.0 38 .................................... TTAAGAGGAAAATAATAGGAACGTTAAGTCTAAGTTAT 1933 36 100.0 43 .................................... AACAGGACATCCCTTGAACCGGAAGCTAGACTCTGGAGTCATA 1854 36 100.0 38 .................................... TGTACTTGGCTATTTGAGCAAGGCTCACCTTTTCCAAG 1780 36 100.0 39 .................................... TGAACACAGTCTTCCCATTAGTGGAAGAGACTACCGATA 1705 36 100.0 37 .................................... ATTGTTATGGTCAACCGGACAATCAGGAAGATTAGCT 1632 36 100.0 36 .................................... GGTTGAAAAGCTTAGTAGCTTTATCCACAAGGAACT 1560 36 100.0 39 .................................... CCATTAGCAAAGATGTTAGAAGTAGCATTAATGCTAACG 1485 36 100.0 40 .................................... TCGGTCTTTGTTTAAATCGACCAAATCCTTTTCATATACT 1409 36 100.0 39 .................................... GATTTAAGAGCGTGCTTGCCATATTCTTCAAACCATACT 1334 36 100.0 35 .................................... GTTGTAGCCACGGGCTACCTCTGGAAGCATATTAC 1263 36 100.0 37 .................................... TATCCTTCGGGGGTATAAGTCATAAGCTCTCCCTTAT 1190 36 100.0 36 .................................... CCAGAAGCCTTGCTCAATGCAAGTCTCAATAACAGT 1118 36 100.0 39 .................................... CCATTAGCAAAGATGTTAGAAGTAGCATTAATGCTAACG 1043 36 100.0 40 .................................... AGTCAGCTGCAATAGCTTGCATACGACGCTTCCAGTGATT 967 36 100.0 38 .................................... GTAAATATGTTCTTTTTGATAGCAAGCAAGCATATTAT 893 36 100.0 38 .................................... GATTCTTTACGTTCTTACCGTTAGAAGCAGCGACCTGT 819 36 100.0 38 .................................... CGGTCATTATGGCTAGTGGCATACAAGAGTTTGGCAAG 745 36 100.0 37 .................................... CTTGACCATGCTTCAGCTTAAGAATCTTCTTAGCTTT 672 36 100.0 38 .................................... AGAAAGTTTGCAGCTTTCTCAAGGAGATTAGTGTCCTT 598 36 100.0 35 .................................... ACCTTTCTCTTGGTCCAACCGAGGCTTAACACCCA 527 36 100.0 38 .................................... GCCTCCTTCTACTAAGGCCGCTAATGTTTTACGGTTCT 453 36 100.0 40 .................................... ATATGCTTCCTCACAATTAACCGCCTTGATAACAGTTTGA 377 36 100.0 35 .................................... AATAAACCATAAGCCTAGAAGATTAGTTCTTCTAG 306 36 100.0 36 .................................... TTAGGAAGCATAATCACTACTGCTGATCCGTGGAAT 234 36 100.0 42 .................................... ACCACTCGGTATCTGAGGTAAACCCTCCCCGGACACACCATA 156 36 100.0 37 .................................... AATGTCATATTTTTCAGCAATAAATTTGTCTAGATTT 83 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================== ================== 96 36 100.0 39 ATCCCCACTCGTTGGGGATATTAATTGATTGGAAAC # Left flank : CTGAAAACCGCTGTAAACTAAAATAGAAACCGGGTTTCTGGGTTAACTCTGAAAACCACCGTAGGGGCGATTCGCGAATCGCCCCTACAATATTTTAAGCAATAATTTGTCTGCGGTCATGCTTCGACCCTACCCCAAGAAACCCGGTTTCTTGCGTCAACCTTTCCCGAAAACTTAAACCAAAATAGAAACCGGGTTTCTGGGTTTTCCTGGGTTAACTCCCAGCCCAAGAAACCCGGTTTTGTGCGTCAACCTTTACCAAAAACTCAAAATAGAGACCGGATTTCCCGATAAACTAAATAACTAGCTAGTAACCTGGTCTTGCGAGGCTGGCCAAAAATCCCTGAAACTTAGCTAATTCGTCGGGAGCCTCGCACCCTCTCTGGGTAACGGTTTCAGCGATTTTTTTTTCGGGGTTTAGCAAAATTGTAGCAACAAAATTCCTGAGCCTCGCAAACCGCCTCTAGACATCCCGCAGGATAAGGGTTATAATTTTTGCT # Right flank : CTCCATTCAATTAAACGATGCAGTTAAGAAACCCGGTTTCTTGCGTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCCACTCGTTGGGGATATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 1210-77 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIUQ01000144.1 Planktothricoides sp. SR001 contig_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1209 37 100.0 36 ..................................... TCTGCTTGCCTACCTGCGCGGGATCTAGCATTCTAG 1136 37 100.0 36 ..................................... AGGGATAAAAATCTCACCCTGAGCAGGAACGTCACC 1063 37 100.0 34 ..................................... CACGAAAATTTAACTGCATATTCAGTCAATAATT 992 37 100.0 37 ..................................... TCCGCACCTTTGGCGGTTGATTAAATTCTTCAATGGC 918 37 100.0 35 ..................................... GTAAAAGTCTCTGATGATTAGCTCATTTCCCGCAG 846 37 100.0 36 ..................................... TCGTTTGGCGCGGATTCGCTGGCTAATTTTTCAGCA 773 37 100.0 37 ..................................... ACAATTATTCTTTAAATGCGATCGCCTCTACCAACGG 699 37 100.0 34 ..................................... TTATTCTGATAAACAATGGCTAGATGTGGCATCT 628 37 100.0 35 ..................................... TCCATCTTTCGTCACGCTTGATGCCAAAATACAGC 556 37 100.0 36 ..................................... GCAAGGCTGAAACCCTTACATAGCGGGATAAACAGA 483 37 100.0 35 ..................................... AACATCATCCGCCCCATCGGGGAACTGGTATCTAA 411 37 100.0 38 ..................................... ATTAACGGCTATCTTTGACACCTTCCTGATAGCCCCGA 336 37 100.0 38 ..................................... GTAACAACTGAGTTTTTTCTACTCCGCTCAACTCCATA 261 37 100.0 36 ..................................... TTGAACCTAACCTAGAATGCCTTGCCTATCCTGAAT 188 37 100.0 38 ..................................... TACAGCCACTCGCTTTTGATCCGACACTGAACAAATAC 113 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 16 37 100.0 36 GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Left flank : CCAATTGATGACACGCCCTAGGAAAAGAGCAAAAATACATAGGGGATCTAGCTTATGTAGGAGAAGCAGCAATTAATACACCGCATAAAAAACCAATTCATCAAAAGATATCGGTGGAAAAAAAAGAAGAAAACCGATTAAAAGCCAAAGAAAGGATTGTGGTCGAACATTTAATAAGGCTGATAAAAATTTATCGAGTTGCGTCAGAAATATTTCGGTTAAATCGCCAAAATTACGAATCAGTTATATTAACAGTATGTGGACTAATAAGATGGCGAATAGGAGCCATTGTCATTAGAGTTAAGAATTGTGAATAAATTTTGTAATAAATGCTTGGCATTCAGAAACAAAATTGATTAATTATTATCAACAAAAATCAAAAAGCCTATGAATTCGTTACTTTTGGAGAACCAGGCACAGTAGTTATAGAAACCTCAAAAGTAGCCATAGAGGGTATTTAGGGATTTTCGGAGATGTCTAAT # Right flank : CAATTCGTGGCATATCTGCACGATTTTTTAGATTTGAGTTGCAACTATAGCAGTCGCCAGTCCAGCTAGGAACTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 16418-12391 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIUQ01000049.1 Planktothricoides sp. SR001 contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 16417 36 100.0 41 .................................... CGGACTGAAAAAATCCTACCAAAAGTTCGCACTTATCTAGC 16340 36 100.0 40 .................................... GCGTCGATACCCAGGGCATCAGCGTTGTGTGAATGGGCAA 16264 36 100.0 36 .................................... AATTCTCGAAATGATGGTTTGATTTGGGAGTGGATA 16192 36 100.0 39 .................................... CTTTCCTTCTTGTCTAAGGGAAGAATTTTAAGCAAAATC 16117 36 100.0 41 .................................... GATACTTTTCAATATCCTTGATTTTGTGCTTACAAATTGCT 16040 36 100.0 42 .................................... TTGTTCATTGTTTTTGCTAGGGAATAGTAATGTTGAGAATAT 15962 36 100.0 43 .................................... CGTGTTTGACCAGGATGGACACCATCCCACTCGGTTTCACCAA 15883 36 100.0 39 .................................... AGAAAGACTAGGTCTTTCTCATATACTCCTAGACCTAAC 15808 36 100.0 43 .................................... TGACTTCGAGTATTGGGTATTCCCCATACTCCATGTCGGGGGA 15729 36 100.0 38 .................................... AGAAGTTTCCTACCTTAATTAATACATCAGCCTTTAAT 15655 36 100.0 42 .................................... ATTAGAAGAATTATCTTCTAGTATAAATGCCAATTCCTCGAT 15577 36 100.0 37 .................................... CATCGCGTCAGCGCGAGGAACCCTTCGGAAATTATCC 15504 36 100.0 38 .................................... TCCCACTCCAACATTAGGAGTGATGACTAATTCGCAAC 15430 36 100.0 41 .................................... ACTTTTGAAGGAGCTGCTACTTCCTTCTCTAGCTTAGTCAC 15353 36 100.0 36 .................................... TCCATTCGGCTCCCCATACGGCATCTTCTGGAGGAT 15281 36 100.0 38 .................................... CTCAGCCTTACCAATCAGCGATACGTCCTCTGGAGATA 15207 36 100.0 39 .................................... TAGAATAACTTTCTTAATCTATTGATTTATCGGTATAAT 15132 36 100.0 41 .................................... TTATCCCAGATACTTTCTAAGGAGATTAAGAGCTGATTGAA 15055 36 100.0 39 .................................... TGCAATAAGATAGCTTCTCCTCCTGCCGCGTTAATCGCG 14980 36 100.0 36 .................................... TCGTCAAGCTGAGAGTAGCCCAGTCTTCTTCCAATA 14908 36 100.0 39 .................................... TGACCTGAGTGAGGTCCAATGATTGGGCTGAACGAACGT 14833 36 100.0 43 .................................... TTTTATGGGAATAGTAATGTTGAGAATATTACCCTACAGCTAT 14754 36 100.0 40 .................................... TATGATGTATCATCCAACTGGGGTTGGCCCATAAGTGATA 14678 36 100.0 39 .................................... TATACATCCTAATTGATACTCTTTAGGAGCTATGAAGAT 14603 36 100.0 38 .................................... AGGTTGTGGCGTGTTGTGGCATCAATGGTTGGTACATA 14529 36 100.0 36 .................................... AGTTTCATTGTTTTTCTCCTAAATTAAGTTAGGTTT 14457 36 100.0 40 .................................... AAAACCCGCTTTTCCTTTGGGCAAACAGGGAGGAGCAGGT 14381 36 100.0 35 .................................... TCGCCCGAGTAGCTTTAGCTACAAGACCTGATACT 14310 36 100.0 38 .................................... ACTCTGAAAGTGCTAATAAAGCCCGCTGGCTAAACTTA 14236 36 100.0 36 .................................... TGGACTTGCATCAGCACCAAGAAAAAATGCCGAGTA 14164 36 100.0 38 .................................... CATATAGTGTAAACAATTGCGGGAATTGAAATTGTTTA 14090 36 100.0 40 .................................... GGATATTCAATCTGTTGCAAGTACCAAAGTTTTTGAAATT 14014 36 100.0 38 .................................... TAACTATGATCATTTTATTTTCCTTGTCATAGTAGACA 13940 36 100.0 38 .................................... TAAAGGAGTGTCGTGCATCAATATTCCGCTCTGGTTTA 13866 36 100.0 38 .................................... ACTATTTATTTTTGTGTCTACTTTTGCATCTATTTTGA 13792 36 100.0 44 .................................... AAGCAGAGATAGACCTAATCCTACAATAATACGTGTAATGTATT 13712 36 100.0 38 .................................... GTTCTCCTTCCTATCAATAAATTTAAACTGTCCCACTC 13638 36 100.0 38 .................................... GTGATGTTATAATCTGACATGACAAAGATTCGATAAAT 13564 36 100.0 39 .................................... CGCCATTCCGGGATAGAACATGGCGGCCAACCATAGCGG 13489 36 100.0 41 .................................... TTCTTCTATTTCCTTAAGCGATGCGTTCAACACGCTTGGTT 13412 36 100.0 43 .................................... AGTCAAAGTAGATCAGGAAATCGAAGGGTTAAAACAAATTCGT 13333 36 100.0 41 .................................... TTGGCAGTATCGACAAAATCGAAGACTTACTTAAGCAGGGA 13256 36 100.0 37 .................................... CGGGCATTGGTAGTCGCCCGTCGGGAAACAATACGGT 13183 36 100.0 35 .................................... CGATCGCCGTGGTGGATAGTGGAAGCGATCGCCGT 13112 36 100.0 42 .................................... GCTTTTGCCCTCGTTTTGCCGATAATTCATCAATCAATTCGT 13034 36 100.0 34 .................................... AATATTTTTGGCTTTGGCTACTTTCCAATAAGCC 12964 36 100.0 46 .................................... ATAAAAAGTCTTCCATAAATACTTGCAAAATTTTATCGTCAGACTC 12882 36 100.0 49 .................................... AGCGTTTTTTCTCCCCAACTAGGAAACTTCCACGATCTGTTTTCGATGT 12797 36 100.0 37 .................................... CAATGTTCGTCGCAGTGCGGGCATCAGACAAGGCAGT 12724 36 100.0 36 .................................... AGTCGAACAATTTCGGATTCAAGTTTTTGCACGATT 12652 36 100.0 38 .................................... GTGGCGGTATCGGTTGCGATCGCGGTATCAGTTGCAGT 12578 36 100.0 43 .................................... GAAAGCGACTTCTATCATCGCTTTCTCTTTTTTTGTCAGATGA 12499 36 100.0 37 .................................... GCACTGGGAACTAACCAGAGGGCTCGTCCCGTGTATT 12426 36 91.7 0 ...........C................T.A..... | ========== ====== ====== ====== ==================================== ================================================= ================== 54 36 99.8 39 ATCCCCACTCGTTGGGGATATTAATTGAATGGAAAC # Left flank : TGTATTCCCCTTATCAAATTCGCTGATGTTATTTTATGTGGTGGTCTATGACATTCCCGATAATAAACGTCGTCAAAAAGTCCATGATTTACTGGAGGGTTATGGCAAATGGGTGCAGTATTCGACGTTTGAATGTGTCCTGAGTTCAGCTAAGTTCGAGGAGTTGCAAAAACGTTTGCGATATCGAGTGAAGTTGGAGGAGGATAGTATCCGCTTTTATCCTCTGTCCCGTCATACTTCGGGGCAGGTGGAAACCTGGGGGGTGGGGCCACCGATTACTGAGTTTCCCGGTTCGGTGATTATTTAGCTAGTAAGCTGGTCTTGCGAGGCTCACGGAAAATCGCTGTAACTTAGCTAATTCGTCGGGAGCCTCGCAGCCTCTCTGGGTAAGGGTTTCAGGGTTTTATTTTTTGGGGTTTAGCAAAATTGTAGCAACAAAATTGCTGAGGCTCGCAAACCGCCTCTAGACATCTTGCTGGGTAAGGGTTATAATTTTAGCT # Right flank : TAAATCAGTTAATACTGTCATAAAGGAGAAAAACTATGGTATGGTGGGCTGCTCTTTTGTTTACATTTGGACTTGTTACTGTGGGATTGTTACTACCGAATCCAACGATATCGTTAATTGTTCTAGGTTCAGCGATTTGGGCAGCGTTTGACTCGTCGAAAATTAATTTGCATAAGTACAAGTCAGGGATTTCTTGTAAGCCAGTAATACTTTTCATTTGTATAGTTGCACTTTGGATTATTGCTTTTCCCTGGTATTTGATTGTTCGCGGCAAAATTTTGGCAGGAAAGGCAGTTCTTAAAGATAAATTCCGCTAAGAACCCAGAAACCGGGTTTCTTCCCCAAATATTTGCCGAAGTCCAAAAATAAAATAGAAACCCGGTTTCTTCTTTGCATAAGGGCGAAGCATTCCGGTCATAAATTTCTAGTTTTTTCCCATAATTTATCCGCCGGAATGCTTTGCCCCTACCCAAATATTTGCGGAAGTCCCAAAATAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCCACTCGTTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 2359-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIUQ01000134.1 Planktothricoides sp. SR001 contig_385, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2358 37 100.0 34 ..................................... TTTTCTCGGTATATGCCCGCGCTCCCAGTACATC 2287 37 100.0 37 ..................................... ATACACATCGAGAGATGTATTCCCCTTTCTACTTTTA 2213 37 100.0 37 ..................................... GATGCCGGGGTGGGAGCCGGGGCGGGGGCGGGGGCGG 2139 37 100.0 38 ..................................... CCTGAAACCCTTACACAGTAAAGGATACAGTAATTTTT 2064 37 100.0 37 ..................................... TTTCTGAAGGAAAATACCCCCACCCCATTGCACCCCC 1990 37 100.0 37 ..................................... AACCCAGATCCACTCACTGATTGAGAAATGACATAAA 1916 37 100.0 37 ..................................... TAATCCAGCAATTTTATGGGAATAGCATTCTGGGGCA 1842 37 100.0 38 ..................................... TTTCCCATTTACCAAAATTGTCTAAAGCATTTTCGTAA 1767 37 100.0 36 ..................................... AATATAATGTAAAACTTCTCTAGCATGAGATTCTGG 1694 37 100.0 34 ..................................... AAGACTAATCGAATTATTCAGACGGGTGCCAACG 1623 37 100.0 35 ..................................... TCTTGTAATACGCTGCCGCCACTGGCCGGGTACTC 1551 37 100.0 38 ..................................... CGAATGCTGCAATCTAGCTCTTAAAGCCTCCTGTGCGA 1476 37 100.0 36 ..................................... GCCGCCGACAAAATCCCACCAGATTTTTTGAGGAAC 1403 37 100.0 38 ..................................... AACTTCTCCGGTTTCCCCCTCAGTTTCCTCCCCAGCTT 1328 37 100.0 39 ..................................... ATTGAGAAATACTGTGATCTGAAACGCTCAAACATTCAA 1252 37 100.0 35 ..................................... ATCATCATCAAAATCGTCACGAATTTCGATAACCT 1180 37 97.3 35 ............................A........ TGATAATTCGTTGATTTTTAAGAAAGCCAATTCTC 1108 37 100.0 38 ..................................... CTCAACAGCGACAAACGAAATCAGGCAAAAGATAGGAA 1033 37 100.0 39 ..................................... ATTAAAAGTGGCAACTACTTAAACACCGAGGGATGTTGC 957 37 100.0 37 ..................................... CTTAGGTACGCTTGGAACCCCTTGCGGTGGCGCTTCT 883 37 100.0 39 ..................................... AACTTAATCTTCAGAGTGTAATCTGCTGTGACAAATCGA 807 37 100.0 38 ..................................... CTATGACTTCCAGACGGACTGTATACAGATGATAGGAG 732 37 100.0 37 ..................................... TTGTAATTAAACATTAATTACATTTATATGGCAGATG 658 37 100.0 39 ..................................... CTAAGAGAATCTATTTGAGCGATGCTGATTTATCGGATG 582 37 100.0 34 ..................................... GGAACACCGGGAGTACGAACGCGGGCGGATTGAA 511 37 100.0 40 ..................................... TTTGGAAATAGCCTGGTAATGGCACGATAAAGACATGAAG 434 37 100.0 35 ..................................... CCCTCGGCAGCCGATACCGCGTTGATATAGACCCT 362 37 100.0 35 ..................................... AATTTAAATTTAGTCCAATTAACGAATGATGACAA 290 37 100.0 34 ..................................... TACCATTTTATCAAGTATCCTCCCACTTCCATTA 219 37 100.0 38 ..................................... TTCGATTATTTTGTCCAGTTTGCTGCGTTGGCTTTCCG 144 37 100.0 38 ..................................... TAAATCCCTGGAGAGGGTGTAGCCCAGTTTCCGCAGGC 69 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 32 37 99.9 37 GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Left flank : CCCTATTAGGGATTGAAACGGCAATGTAGAATGGGTAATATCAGCAAAGAGGAAA # Right flank : CAACTTTCGCTTCTTTAGTTGGCTGTTGGGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTATATTGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //