Array 1 953647-954712 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029336.1 Salmonella enterica subsp. enterica serovar Montevideo strain CFSAN051296 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 953647 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 953708 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 953769 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 953830 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 953891 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 953952 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 954013 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 954074 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 954135 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 954197 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 954258 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 954319 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 954380 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 954441 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 954502 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 954563 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 954624 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 954685 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 970848-972341 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029336.1 Salmonella enterica subsp. enterica serovar Montevideo strain CFSAN051296 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 970848 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 970909 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 970970 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 971031 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 971092 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 971153 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 971214 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 971275 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 971336 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 971397 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 971458 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 971519 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 971580 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 971641 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 971702 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 971763 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 971824 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 971885 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 971946 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 972007 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 972068 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 972129 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 972190 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 972251 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 972312 29 93.1 0 A...........T................ | A [972338] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //