Array 1 63657-64022 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVSC010000001.1 Lactobacillus sp. HBUAS51381 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 63657 36 100.0 30 .................................... CGACCACAAGGAGGATATCTCATGCAAAAA 63723 36 100.0 30 .................................... CAATCTCGACATATCCAACAGGCACGTGTC 63789 36 100.0 30 .................................... TTTGATGAGATATTTTGGTTCGTTCTTTGT 63855 36 100.0 30 .................................... TCGGCGAGATACCGAACACTCGCATCTGGA 63921 36 100.0 30 .................................... CCTACTCGATACTTTTCGAGAAGTGCATCA 63987 35 75.0 0 ........T.......G..G..G..A..-C.A..A. | C [64006] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 95.8 30 GGTTCAGACCTTACTTATTTGACTACGGTACGAACC # Left flank : ATGATGTGATCGTCGTTGAAGATCTGACCGTGACTAAAATGCTCAAAGCGCATCGGTATGCCAAGCATATTAGCGAGATTAGTCCTAATCGGTTTATCACGATGTTGGAATATAAGGCGCAGTGGCATGCTGGCAAACAGGTAATTCGAGTTGACCCTAAAAATACGACTCAAGCTTGTCATAATTGTGGTTTTATCATGGGTACTGACGGCACTCGTGCGCTAACCATCAGCGATCGTGAGTGGACGTGCCCCAAATGTCATGTCCATCATAATCGCGATAAAAATGCGGCTAAAAATATCTTGCAGCGTGGTCTTGCTACACTTAATTGATCGCGTTAAACTAATTATGCGGTCGACTCGATCGTAACTGGCAATTTTAGTCAGGCGGCGATTAAATAAATGTGTAATCCGTTGTGCATTGATGTGCTTGCACATTGAGAATCAGCGTTGTGTTGTTCATCGCAAACCTAAATCAAATAAGGTGAATATAATTCATCA # Right flank : CTTCATTCTAAATTATTATACTGACTAAGTCGTAAGACTGGATAAAGTATTAAAAACTTATTCAGTCTTTTTTTGTGACATCGACCAAGCAAAGGACTAGTCAAAATATACCTATGGGGGTATACTGAGCATATTCATTATTTTGTCAGGAGGATTTGAAGATGCAAGCCATTACGAGTAAAGATTTCGAACATGTGGGTGACGACACGGCCGTTACGGTAGTTGACTTTTGGGCCGACTGGTGTGGGCCATGTAAGATGCAGACGCCGGTCCTAGAAGAACTCGATCGTGACTATGGCGATCAAGTGAAGTTTGCCTCGTTAGATGTCGACCAGAATCAGGAATTGGCACAGTCACTGGGCATCATGAGTATCCCGTCATTGGTGATCTTTAAGAATGGGATGCCGACGGAAAAGGTCGTGGGCTTCCACCCCAAGTCGGCCCTGAAGAAGTATATCGATGAAAAGGTTGCCGAGGTGACGGCCTAATGGTTCAAACCA # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCAGACCTTACTTATTTGACTACGGTACGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 39830-41142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVSC010000011.1 Lactobacillus sp. HBUAS51381 Scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39830 29 100.0 32 ............................. CTGGCCATCGGAAACATGAATCTGACGGGCTA 39891 29 96.6 32 ............................C GACCGCCTGTTGGCCGATATCCACAAAGACAC 39952 29 100.0 32 ............................. CGACCGTTTGTTGCACATCTTCAATTGATGTG 40013 29 100.0 32 ............................. GTGGGTAAACACCGTTGAGCTGCTAGGGATCC 40074 29 100.0 32 ............................. TCCACGAATCCCGCCGTTCAGCTCGCCAATCG 40135 29 100.0 33 ............................. TGTTAGGGCTAGCCAATGGATGGGAGGTTGAAA 40197 29 100.0 32 ............................. ACGAATCGGCATCATTGAAAATAGAATCGGTT 40258 29 100.0 32 ............................. CCCAGTTGTTGACGGCTTTCGGATCGCCGTTA 40319 29 96.6 32 ............................C GCTAACCCAGACCATGTATTTGTAGTTGAAAC 40380 29 100.0 33 ............................. GGTACTCGAAAGGTATCCAGCGACGAACTTTCA 40442 29 96.6 32 ............................C TGGCCCACCACCGCCGGAGCCATTGATTAAGC 40503 29 96.6 32 ............................C GCGTGGCGTCACGGTTACAGCACGACAACAAT 40564 29 100.0 33 ............................. GGTACTCGAAAGGTATCCAGCGACGAACTTTCA 40626 29 96.6 32 ............................C GAAAATTTCGCAAAAGTGGCGTTTTTTTGCAG 40687 29 96.6 32 ............................C GGACGCAAGCGTTACCGGGTGGCTGTGGTATA 40748 29 100.0 32 ............................. TAACGGTAAAACTACGGCCCGCGGTGATCGAG 40809 29 100.0 32 ............................. CTGTTGGCCCATATGGCGAACAATTTGATGAA 40870 29 100.0 32 ............................. ACGGATTTGACCGGTAGCGAGATCAAGGGGCT 40931 29 96.6 32 ............................C CTCGCTGATCAGCTTCACTACATCGCCACTAC 40992 29 100.0 32 ............................. CTCTTTCCCGTCCGCGCCAATCACTACCGGTT 41053 29 100.0 32 ............................. TCTTCGGGCCGTCTCGCCACCACCCACACCCG 41114 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.8 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : TTACTACCATAATGGATTTATCCATGCCAAGACGATCGTGGTCGATGGCCGGATTGCGTCGGTCGGATCGGCGAACATGGACTATCGGAGCTTCAAACTAAACTTCGAAATTAACGCCTTCATCTATGACGAGGGCATCGCGTGCCAATTGGAAAATATCTTCGAAAAGGATATGGCGCACAGCGAGTTGATTACACCGGAGATGTTTGATGACCAGTCGTTGTATTTGAAATTTAAGCAGACGGCTTCACGGCTGTTATCACCAATTTTATAATAGGCGAATGCCACGCGATTTAAACGAAAATTTGTTTAAGTTGCGTGGCATTTTATTATTCTAGGTGGAACTAATCCTCGTAAACATAATCTCCTATTTTTGAGATTTGGCGTCGGGGTATTTTCATTGTGAATCATTGCCGACTGCTGTATGCTGGAAATAACAAACTGACTAAAACGGGAACATTCCGAAAATGAGAATGCCGGTGTGATAGGGATTGTTTAGT # Right flank : CGGGAAGCCGGTTAGCGCAACCATTAGCTACAGGTATTCCCCACAAACGTAGGGGCAAAACAAACCTAAAAAGACAGATAAGCTATCATAATAAGTTGGTCATTACATAGATCGCCGATGTTGGTTGTTTATTTTTACCAACTCAGCGATTATAATAATAGTTAAAATATGAAGCGGTTACACGAAGACAGCAGATCGACGATGTGAGGAGGTTTTAGCATGAAACGCTTTGTGTCGTTGCCGGTCGTGGATTCTAGTCTATATTTATTTGGGGGTCACATGCGAACCGTTCCCGGTGGCTGGCAATTTTTTGAACAAAAACATCAAGCATTTGAGCTGATGGTCGTCATTGATGGTCGGCAAACGACAGAGATTAAAAATCTCACGACGTATGACTATGGTGCCGGTGAAGCCATCATCATTTCGCCCGGGACAGTGCATACAAATCAAAACAGTAGCGCAGAGCAGGATATGACTTATATTTGTTTCCATTTTAACAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5518-4205 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVSC010000003.1 Lactobacillus sp. HBUAS51381 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5517 28 100.0 33 ............................ CGATGAAATAGAATCAAACACTAACTATTCACT 5456 28 100.0 33 ............................ CGCCGCTCTGAACGCCCGCAGCTCCGCCTCAAT 5395 28 100.0 33 ............................ TGACAGCAAGGATAACACTTCAATCACGCTAAA 5334 28 100.0 33 ............................ CGCCTGGTGACATTTTCGCAAGACTCAATAAAT 5273 28 100.0 33 ............................ TTAAATATTCCTTGGCTGAGTTATAAAAAGACA 5212 28 100.0 34 ............................ TGTCAGCTGGACGTCCATTGGACGGCGGAGTGTC 5150 28 100.0 33 ............................ TATCTGCTTCTTGCCGTTGTGGAGGCCGTTTAC 5089 28 100.0 33 ............................ CTCCGGTCGGGTTCTGTACACCCCTGGTCGTTG 5028 28 100.0 33 ............................ CAAGGACGGCGACCGCGTCGGCGAACTTTCAAA 4967 28 100.0 33 ............................ CGGATAAAAGGTTGCTAACCATTACAGGTTAAC 4906 28 100.0 33 ............................ TATCCGTCTGAACCACTGGACTGTAGGTGGTAG 4845 28 100.0 33 ............................ TAAAAGCCCGGTAATTTAGCTTTACGTGAGAGA 4784 28 100.0 33 ............................ CTTCACCACTAGTTTCGGCATTGAGGTAGACGA 4723 28 100.0 33 ............................ TGGCGGCGTAGACACTCAACTGCTTTGCGGTAT 4662 28 100.0 33 ............................ TAAACGTGGCTAATGCTGATATATACTTTATTG 4601 28 100.0 34 ............................ TTACGTCAAGGACAACTCGGTGAGCTTGGCTGCT 4539 28 100.0 33 ............................ CACGCAATTGCCACGTAAAGAACTCCGTTTTCC 4478 28 100.0 33 ............................ TAGGAATCAAAACTTAGTGGGCAAGCGTTTTGG 4417 28 100.0 33 ............................ CAGAAGAAACCAGTCATTAATGGCTGGAGAATC 4356 28 100.0 33 ............................ CTCATGGGATTCGGTGATTCCCTTTGAACCACT 4295 28 100.0 33 ............................ TCGGTATGAGCTTCAGTTGCGTACGGGTAAAGC 4234 28 89.3 0 ...........A..C............T | G,T [4207,4210] ========== ====== ====== ====== ============================ ================================== ================== 22 28 99.5 33 GTATTCCCCGTGCATACGGGGGTGATCC # Left flank : CTTCACAGACCCTGGAAAGCATGGCGGCCATCAATGATGTGACGTCCATGCCAATTCTGCGGCCACTGTTGTCCATGGACAAGACGGAAATTATCAAGGTTGCCGAGGACATCGACACCTATGATCTGTCCATCCTGCCATACGAGGACTGTTGTACCATCTTCACGCCACCGGCACCCAAGACGCATCCGAGCTTGGAAAAGTCCCGGAAGTACGAGGGGTACATTGACGTTGACGGGTTGATGAAGGAAGCTTTGGACGGTATTGTCATTTCTGACATTCGCCCTGGCGATAATTACCTGAACCAAAACGAAGATGTTTTTGCCGAATTACTCTAAAACTAAGTATGACGAAGCCCGGGTGGGAGGACTGCCCGGGCTTTTTGCGGACCAATTTTTGATTGAGAATTGGACGCAATTAGGTTATGCTAGTGAAGACAAACTGACCAAAACACGTTTATTTGCGAAAATGAAGTGCCGGTCTGACGGGATTTGTTTAGT # Right flank : GTGCCATTTCATTGGTCTAGACGGGGTATCTTTCATATACTGAAGTGACAACATGAGATTGGGTTATCCACATAAAAACAGGGGACACACTTAAAAGAGGGCGTGAACTAATGAAGTTTGAACCATTTAGTGAAAATGATTCCTTAGGTTGTGTTACGGTGACCGTAAGCTTGGTGGTTACTGTTTTCCTGATTTACCTGTTTATTGGTACACTTTCACAATTCTTCTAGGAAAAATGAGTTTGCGCACAAGCGAGAGTATTCCCGTGTTTGTGGGGAAATCATAAAATATACTGCATCTTAGCGCCATCTCTACAAGGGCAGGGAGAGTATCCCAGAGTTTTTCACGTTTTTATGGCAAAACACTTGTCATTGCCCCCGGAGTTGCGCGATAATTGAAATAACAATCGGTATAGCACCGATGTATATTTTGAAGGGGTTGATCTGCGTGGAAGTCACACGACTCGGCGATACATTTTCCTTATCTGGTACGTTACCAGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGTGCATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 7494-6671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVSC010000043.1 Lactobacillus sp. HBUAS51381 Scaffold43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7493 29 96.6 32 ............................C GTGACACACTTTTTATCCGTAGTATTGCCTAA 7432 29 96.6 32 ............................C GTGATGGGTACTTTCACCATCACTGATGGAGC 7371 29 100.0 32 ............................. GATTCAATCGACGCCGTTATGGTTATTGCTGA 7310 29 100.0 32 ............................. AAATCGCGCCGTATCACCGGGATAAACCCGGC 7249 29 96.6 32 ............................C GTGATTTTCGGGGATTATGACACCCGCACGCT 7188 29 100.0 32 ............................. TATTACAGCTCCTTTTGTGCCCCGACAGATGT 7127 29 100.0 32 ............................. GTGCGTGGTGCCTTGGGTGTCTTCGATGGCAT 7066 29 100.0 32 ............................. AAGTTAGGCGTTTGCCGGCTCGTTCGTACTGG 7005 29 100.0 32 ............................. GGTTGCAATCGGATCTAGGCGGTGTGCGAATT 6944 29 96.6 32 ............................C ATCAAACACCACACCGACATCTTAGAGCGGTT 6883 29 96.6 32 ............................C GTTGTCGTTGATTTGGGTCTTGGCGATCATGA 6822 29 100.0 32 ............................. AACCGTTTTCTTATTAACTTGCGTGGCAAGGA 6761 29 100.0 32 ............................. GTATCCTCTCAAGCCAGCTTAACTGAAGCCAG T [6743] 6699 29 72.4 0 ..........TGCA.A.....CC.....A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 96.8 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : GCGCAGGATGCGATTATATCCGTAGGTGCGGTGAGACGTTCTGCCAAAGGAAAGATCGATCACTTTTACAAGTTGATTCAGATTGATCGGAAGATTCCAGCGAATATCGTGGCATTGACGAGTATTACGGATGAAATGCTGGTTGCTCAAGGGGTTCGTTTGCGGACGGCGATGCAAGAGCTACAGGTCTTCGTTGGTGATTTAGCGGTTGTGGGGTATAATTTGCGATTTGATGAGGGATTCTTAGCTACCGCATGTCGGCGGGTTAACCAGCCAACTTTAACTAATCGCATGGTGGACTTAATGCCGTTTATCAAAAAGACGAATCACTTTCTTGATAATTATCGGCTACAGACGGTACTAACCGAGTATGGTATCGAAAATAAAACGCCGCATCATTCACTGGCAGATGCCAAGGCAACTTTTGCCTTAGCGGACAAACTGACCAAAACAGGGACTTTTCAAATTTAGGAACCGCGGTATGACGGGATTTGTTTAGT # Right flank : AACACCACCCTCGAAAAAAACGTATCCTTTCAAGCTAGCAGAAAGAATACGTTTAATTAATTCCAGACAAGTTACTTGCCAGTCGTATACAAATCCAACAGCCGCTTCCGCAAGGCGTCGTCGTAAGCCGTCAAATACAGGCCGTATTTGCCACGCTTCATCAAAACATTCAGCACGTTAGCGATAAACACCTTGTACTCGTCACGGGTGAATGTCATGTCCTTACGCTTTTTGAAAACTTCTTTGTGCGAGTATTTTTCGGGAATGATGGTCATCGTGTCCGTCTTGGCGTCGTAGCCAAACGAAGGCCCGATAATCATCCCCACGTAATTCAGATCGAATCCCTGCAGCGTGTAGATCGTTCCCACCTGAGTGATGGAGCCTTCGCGCTTGGCCCAGTGGGTGCGTTGAGGATCCCACTCGTCCCATGGCAAATTGAATGTATCCATTTCCACGTTATGGCGGCCATCAATCCGTGGGAACCCCGACGTGGCCACCAC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17349-18475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVSC010000043.1 Lactobacillus sp. HBUAS51381 Scaffold43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 17349 28 100.0 33 ............................ CCTCATTTTTTGACATCTTTAACGTCCTCCGTT 17410 28 100.0 33 ............................ CAACCCCTATATGGCAGTGACGGTTACTTGGGG 17471 28 100.0 33 ............................ TCTTAGCCACCTCTTCTGATACAATTGGTACGG 17532 28 100.0 33 ............................ TGCGGTGCAAATTGTGCTGCACAAGTCAGATAC 17593 28 100.0 33 ............................ TGAATACTTGGATCGTTATGATGATGGGCAAGC 17654 28 100.0 33 ............................ CGTATATTCGCAAAAAATCCCTAGTCGGTAGCG 17715 28 100.0 33 ............................ TTAGCTGTCGGCGACACAAATGAGCGGCCATAA 17776 28 100.0 33 ............................ TAGAAGAGATCAAGCAGACTTTTCCAGTGCCTG 17837 28 100.0 33 ............................ TGCATCAGGTAACACCTACTATGTTGGTACGAC 17898 28 100.0 33 ............................ CATCTTTCAAAACACGGGCAATACAAGTTGGGC 17959 28 100.0 33 ............................ CGACCCCCGAACATGTGGATCACGCCGTTAACC 18020 28 100.0 34 ............................ CTTGACGGACGGGCAGATCGCGGCCGCGAGACTG 18082 28 100.0 33 ............................ CGTGTTTTTGCCGCACCCCGACTGGAAGCCATG 18143 28 96.4 33 .............A.............. CATGCAGAAGAACAATGGATTGCAGTTGCCAAA 18204 28 96.4 33 ...............A............ TTTAAAAATTGAGCTTGCCGGTGTTCTCCCTTG 18265 28 100.0 33 ............................ CACTGATCCAGGATGAACGTTTTTTCCGCCGCC 18326 28 100.0 33 ............................ TACCTCTCTCCCTAACAACCCTTTAGCTTGTGC 18387 28 100.0 33 ............................ CGATTGAGGTGAATGCCGGAGTCAAAAGTGAAC 18448 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================== ================== 19 28 99.4 33 GTGTTCCCCACAGGTGTGGGGGTGATCC # Left flank : TGAACGCTTCTTAGCCCATAATGCTGTAGTCCGTTGGGATATTTTCATATGCGTGTATAACTCCTTAATATTGTTGACCAATATCGATAAGTGTCATTCGACAAACAACATACATGCTATTTTTCCAAGAATCTAAACCGGCTATCTATTGTTTTTTGTAATTAAAAAGATACCGGAATTCCCAGTTCAAGTCAATCTATTTTACATACAATATAATTAATATTGTTTCATAAAATATTTTGTGTATTTAGCCGTCAAGGTACGCTGTTATGTAATCCATCATGTAACCGCATTCATTATTTTACATTTTAATCATAGCGCTTTTTTTAGAAAATGGGAGCTTAAATTTTAGAGGCGTTGAAGATCTCTTTCTTTGCTAAAAAATCTCGTCAGCATATTCGTTGTCAATCCAACGTCAATCTTGTATGCTGTAACAGTAAACTGACTAATTTCAGCGATTTAGAAAATATAGAATGCCGGTCTGACAGGGATTGTTTAGT # Right flank : TTGAAAGGAGGCGGCTAGCCATGAAAAAATCACAACGTGAAGCCCATCTTAGATGGGATAGAAACCATCAAGACCGCCTGAAGTTCCTGCGGTATCGATCTTATACTAAGACTTTTATTTTGAAACTGTCGGAAGTCGATGACCTAAACGCCATCGAAAAGATGGTTGAAGAAAGAAGGAACCATTTGAAAAAAGGCATTGATGTGAAGTGAACCCTTAAAGTTGGACACAGAATTTACGCTGCTTGCTGGATGGTGAGTTCCCGGTACTTTTCCGGGGACTTGCCATCCAGTTTTGTTTTGATTCGACGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACAGGTGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //