Array 1 177831-175299 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNK01000001.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001375 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 177830 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 177769 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 177708 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 177647 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 177586 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 177525 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 177464 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 177403 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 177342 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 177281 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 177220 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 177159 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 177098 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 177037 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 176976 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 176915 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 176854 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 176793 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 176732 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 176671 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 176610 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 176549 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 176488 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 176427 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 176366 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 176305 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 176244 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 176183 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 176122 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 176061 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 176000 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 175939 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 175878 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 175817 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 175756 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 175695 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 175634 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 175573 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 175512 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 175451 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 175389 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 175328 29 96.6 0 ............T................ | A [175301] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 195762-194453 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRNK01000001.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001375 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 195761 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 195700 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 195639 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 195578 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 195517 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 195456 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 195395 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 195334 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 195273 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 195212 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 195151 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 195090 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 195029 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 194968 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 194907 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 194846 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 194785 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 194724 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 194663 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 194602 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 194541 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 194480 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //