Array 1 44424-43863 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYS01000033.1 Bacteroides sp. AM25-34 AM25-34.Scaf33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 44423 32 100.0 34 ................................ TGATGCTACATCCACCATGAGCATGGTATTTATG 44357 32 100.0 35 ................................ ACAATCACCTCAGCATTTCGGACTCCCGAACATAA 44290 32 100.0 33 ................................ GAGCTATTGCAACAGCGAGTCAAAGATGTCGAC 44225 32 100.0 35 ................................ ACAATCACCTCAGCATTTCGGACTCCCGAACATAA 44158 32 100.0 34 ................................ TACAGTTACATCTACAAACATTACTATAACGAAT 44092 32 100.0 34 ................................ CTATCAAAACATTAGGCTTAGCTGATTTGTTAAG 44026 32 100.0 34 ................................ AATGCCTCGATAGTAGGATACAGCCCCTTGCTGC 43960 32 100.0 34 ................................ TCCATACAGCGAGAAGCAATACTTAACCAATACA 43894 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 9 32 100.0 34 GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Left flank : TGATAATTATCCGGTATTTCTAATAAAATGATTTACGAGTATGTATATTCTTGTAACTTATGATGTGGATACTACGAGCAAGGAAGGAGCTCGCCGTTTACGGTGTGTGGCTAAGGCTTGCATAGATTATGGACAGAGGGTACAGAATTCTGTCTTTGAATGTGAGGTGACAGAAGCACAATATTGTCTCTTGAGAGGAAGAATCAAAGATATCATTGATATGTCTCGTGATAGTGTTAGATTCTATATTCTTAGTAAAAATGAGAATAGAAGGGTGGAAGTGATAGGTGTCGAAACTGCTTATAAAGTTAATAATGCTTTTATTGTATAATGTGTGCGAATGTGGAGTGTTGCAAAAAAAGTAGTATCTTCGCAACTCTTAATAATCAGCAGATTGGCTTGTTTATAAGGCGAATGCCGTTATTCAATTGAAATAAAAATGAGAATTCGCATATTAGTAGGGTTAATTTATTGATTTATAATATACAACTCTGTATACA # Right flank : TAATGTGCAAGCTACGCCAGTAGGACCATTGAACTTACGCTACAGACGCTACTTTCAATCTTCCTCTTTTAAAAAAGAAACAAACTCGGGGGTGAGTTTCGTTCCTTCGGCAGCAAGGTCATCGTATGTATAGGAAAAGGGTTCACCGGTGGCTTTATCATACCAGCGACGATGCCGGACATGAAGATAGACAGGTTTACCACGCAGAGAAAACTCCTGAATTACTTTTTCATCTATAAAACCACTGGAAATGACAGTACCGCTCTTGTAATCAAAACGTTCCATATAATTCTTCTCATCAAGCCAAACTTCGATTTTTGAAGAATCGTCATGCCAACCGGATATATCGAAATATTCCATTAAAACTTCAGAGAAGATTATCCGAAGTAACTTATGCAGACTACGATTGGGATTCATTGGATTGGTTTGTTTAATTTAAATGCAAAAATAATGTTATTTGGATAATCTACACGGATCACCCACAGGATTTTCGGATTAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 39425-42236 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYS01000013.1 Bacteroides sp. AM25-34 AM25-34.Scaf13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 39425 47 91.5 29 A...............A.............A..............G. AATTCGCGTAGCTTATCCCTGTCGGTGCC 39501 47 97.9 30 ................A.............................. TGAAGATAGGATGGGCAATAAAAAACCTTT 39578 47 97.9 30 ................A.............................. GAATGGGTGGAAAAGGCATGGCGTTTCTTG 39655 47 97.9 30 ................A.............................. TTCTTTTTATTAATATGGCAAGCCGTCACG 39732 47 97.9 30 ................A.............................. ATGGAAGCAGAAGTAAAACAAGTAATCAAG 39809 47 97.9 30 ................A.............................. TCAAAAATTACTTCTAATATCTTTTTTTAT 39886 47 95.7 30 ................A............................G. TAGGCAGCCAAGAAGGATTAATTCAATACG 39963 47 97.9 30 ................A.............................. TAAATTATACAGATATGGAACTGATAAGAA 40040 47 100.0 30 ............................................... TGAATCTATTCAGAATCGAAAAAATCAAAG 40117 47 100.0 29 ............................................... GCCATATCCAAATAACAATCAAAATCCAA 40193 47 100.0 30 ............................................... TCGAGTCGTACGTCAATACCTGTCCTTCCT 40270 47 100.0 30 ............................................... CTCTTGGGTCGCATAATCTTCGATTGGCGA 40347 47 100.0 30 ............................................... ACAATACATTCGACCTCTATAACGATAGAA 40424 47 100.0 30 ............................................... TAATGCCTATTAGTGATGCTGAAGGCTATG 40501 47 100.0 30 ............................................... CGGGAGGGGAACCTGATACTCAACGAGGCT 40578 47 100.0 30 ............................................... GGAAACTCATAGTTGCACCTAACGAAGCTC 40655 47 100.0 30 ............................................... TTTTATCCATTCTTTATTTTCCATCTATAA 40732 47 100.0 30 ............................................... TAACCTGAAACAGGGTATCAAAAGTATTAT 40809 47 100.0 30 ............................................... ACTCTTGAACAAATACTTTATGCATTCGGG 40886 47 100.0 30 ............................................... GTAATAAGGTTGCTTATAATGCCTATAATA 40963 47 100.0 30 ............................................... CTTCGGCAGGTGGATAGTAACCGAACACGT 41040 47 100.0 30 ............................................... AAGTGTGTATGACAATATTGCGGTTTTATA 41117 47 100.0 29 ............................................... CCAAACACGAATACAGACTTTAATTTCCA 41193 47 100.0 30 ............................................... AGGGAAACGATACATAACGGAAAACAAGCC 41270 47 100.0 30 ............................................... CATTTCAGCGAAGAAAGGAGGTCTGTTATG 41347 47 100.0 29 ............................................... ATAAGAATAAATTTTAATAAGGGCTGCCC 41423 47 100.0 30 ............................................... GCAACAATGGCAAGGCCATAGGCCGGACAG 41500 47 100.0 30 ............................................... CGTAACAAAGAACTTTTAGAAATGGATTAC 41577 47 100.0 29 ............................................... AATAAGTAGATTTAGAACGGTAATACTGA 41653 47 100.0 30 ............................................... ATTATGACATTTTCAAAAACTATTACGCAA 41730 47 100.0 30 ............................................... AAGAGAAAGGGAATATAACACAAAAATATC 41807 47 100.0 30 ............................................... TATATTCCCTTTCTCTCCTTCGTGTTGTAT 41884 47 100.0 29 ............................................... TAAAAGAAGAAGCGTATGGAAGCATTTAA 41960 47 100.0 30 ............................................... GAACCCAGTACATTTGCTCAGTCAATTAAA 42037 47 100.0 29 ............................................... CTTCTTCAACGGGTTCACCGTGACAAGTG 42113 47 100.0 30 ............................................... CGAACCAGGAAAATTTATTGTTGAATAATT 42190 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 37 47 99.3 30 GTTGTGATTTGCTTTCGAATTAGTATCTTTGAACCATTGAAAACAAC # Left flank : CAGCAAGTACCCAAACCCTGCTCGGTAGCAGCCAGACAGAGATGTTCCACCGCAATAGCTATATCAATATCTGCATGATCTTTATTGTCGGCACGACGATGCCAAGACTCTTCATGGTTTGTGCAAGCCACAATGATACAGGGAGCTGTGGCAAGCCACTCACGCTTATAGCATTGCTGCAACGCCTTTAATGTAGGTTCATCTGTGACTATTTTAAACCGCCACGGTTGGAAATTAACTGCCGAGGGAGCCAAGCGTACACACTCCATGATATACTCCAATTTTTCTATCTCAACCGAACGACCGGCATATTTGCGGGCAGAATAGCGCGCTTTTACTAATTCTAGAAAGTTCATAAGCATTATTATTAGTTTGCAGACAAAAATACTAACTTTGCTAATATATCCCAAGCTTTTTGCAATGAGTATCATTTATCAATTGCTTACGAACTATTTATATTCTCATTTTGTAATTTTCAATCCTATTATTATCAAATTACT # Right flank : CTGAATATATGTTACAAGCTAATTACCAATTAGTTACACATATATTCAGAAATTAAAAACAAAGTTGTTTTCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCGAATTAGTATCTTTGAACCATTGAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.90,-1.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //