Array 1 43355-39964 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUN01000007.1 Thermococcus sp. GR5 NODE_7_length_136408_cov_55.841577, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 43354 30 100.0 37 .............................. TCTTGTTGCGGATTATGGCGGTTGATAGTATCATGAC 43287 30 100.0 37 .............................. ACCCTCAACCGCGAGAAGGGCCTGTACTACATTGAGA 43220 30 100.0 37 .............................. TGTCACGCAGGTGCATCCTCGCCCTAGCCTCCATCAA 43153 30 100.0 36 .............................. CAATATAGACCGAGAGCAACAAATCCTCACGGGTCA 43087 30 100.0 37 .............................. TATCATAAGTTGGATCCTGAGCTGAGGGAGAAATACA 43020 30 100.0 37 .............................. CATGCTCGCGAGGCTGTTGTTCATGTCTCACCCCTCC 42953 30 100.0 38 .............................. CAGCGTGGCTCCAGGCTTCGCGAATAACGTTCTCGATG 42885 30 100.0 36 .............................. GCCATCGCGTTAGCCTGCTCATCTTCCGTCCACTGC 42819 30 100.0 36 .............................. TAGACAACTGGGACGATGTGAGCACTTTGGAGAAAG 42753 30 100.0 37 .............................. TGCATGCTCAAGGGTGTAGAACACAACATCAAAGTTG 42686 30 100.0 36 .............................. AGTTGCAGTATGCAAGTGCTCCATATCCGCCGTTGA 42620 30 100.0 39 .............................. GCATCAAATTACCTCACTCTTGACCTTGACGTTTATAAG 42551 30 100.0 37 .............................. CGAAAGAGATTGAGAAGAGCGAAAAGAAGAGCAAGAA 42484 30 100.0 38 .............................. GGGGCCGCTTGCCGAGCTTCTTGAACTGCTGTACCTCC 42416 30 100.0 36 .............................. ATTTACTAACCTCAAGTTACTAAAACCGACAAAAAA 42350 30 100.0 38 .............................. AGTCTCCCTTAAAGTAGTATGCCCTTTTGTCATGTCTA 42282 30 100.0 37 .............................. CGGTTTCTGAAGTAGTAATAAGCGGCTCTGCGCTCCT 42215 30 100.0 38 .............................. TGGCTCATCACCTCACGGGGCTTCGTCCTCCTCTTCGA 42147 30 100.0 37 .............................. CTTCATAGCTCCTCCTCCTTTCGTGGTGGATATCCGT 42080 30 100.0 38 .............................. TGATGAATTCGCCGATTGGAATTCTCGGGAAAGCTACA 42012 30 100.0 37 .............................. CAAAGCTGCGGTCTCCAACCTAACGAAAGACGGCGAA 41945 30 100.0 37 .............................. GGAGATTTCGAAGTGAGAAGAATTAAAGCAGAATTGA 41878 30 100.0 38 .............................. AACATTTGGCCAACTTCTCCGGTTCTGAACCACATCTT 41810 30 100.0 36 .............................. CTTATAAGCCCGTATATCGTCAAAAGGGGCGGCGAT 41744 30 100.0 37 .............................. TACAGAAGATCGAGCAGCGCGAGGCCCAGGAGAGGCG 41677 30 100.0 38 .............................. AAGAACACCATGACGAAGACCATTGCAACTCCGTACAT 41609 30 100.0 38 .............................. TACCTCATGCCCTCACCCCCCACGCGGTGAGGCTCGCC 41541 30 100.0 38 .............................. CTAGCCGCGCTGGGGGTGCTGCCATGAGGAAGTTCTAC 41473 30 100.0 40 .............................. AGCTGAGTACCACTGTCATGGAGCATCGCGGAGTCGTGAT 41403 30 100.0 38 .............................. GCGTTTGTAGTGATAACTGCATAAACATACGCGTCGAA 41335 30 100.0 36 .............................. AGAGGCACTTCACGACAGCATAATCAGCCACGGCCA 41269 30 100.0 37 .............................. GCAAAAAAAGGTAAGGAGGGATGTGGAGATGGCGGTT 41202 30 100.0 38 .............................. CCGACAAGTTGAAAGCCTTGTTACCACCGCTGTTGATG 41134 30 100.0 37 .............................. GCGAGGGCTGAGCGTCGTGGGGAGATTGTAGAAGCGG 41067 30 100.0 38 .............................. CTTAATGACTTCGTGAAAGAGCACTTTGGCATCTCAAT 40999 30 100.0 37 .............................. ACAATACTCAAGAGAATTACAGCTGGATAATCAGCTC 40932 30 100.0 38 .............................. AGAAGTTCAACGAGGTCTTCAAGGAGCAGTACAGCGGG 40864 30 100.0 38 .............................. AAGAGCTGGAAAAACTCTATGAGGTCGAGAACCTTAGC 40796 30 100.0 37 .............................. CCGACGATGCCGATAATCATGTTCAGGTCACCCTTCA 40729 30 100.0 37 .............................. TTTTTGTGGATAAAAGTTAAAGCGGTGGCTAGTCCCC 40662 30 100.0 36 .............................. CTTTGTGAGTTTGTCTTTGTTGAGGCCGAGGAATGA 40596 30 100.0 35 .............................. TGACTCGGCAATGAAGTCCCTCAAAAACTCCTCGA 40531 30 100.0 38 .............................. ACCGTCCGGCTGAGGAGGTAACGCTGGAGAACTACAAA 40463 30 100.0 38 .............................. TGAGGAGAAGATGAGAGGAAGCAGGGAGACGTTCATAA 40395 30 100.0 37 .............................. GTATTTTCGTCGTATTCTACCAAGGTGGGGTCAGTTG 40328 30 100.0 37 .............................. GACCCGCATGCGCTGGACTTCCTTGACGGCTACCAGT 40261 30 100.0 37 .............................. TTTTAAATCGACTGGTTGAGCTTCTCAAAAAATATTA 40194 30 100.0 38 .............................. ACAGCACCCTCGACGTTTCTACGACAGTCGTTCAGGAG 40126 30 100.0 36 .............................. ATCATGTGGGTGGCTGGGTCATCGAGCTAACAGAGG 40060 30 100.0 37 .............................. CAAATTCCAACCGCCGAAGCTAGTGCCCCATTTCCTA 39993 30 90.0 0 ............T...........C....T | ========== ====== ====== ====== ============================== ======================================== ================== 51 30 99.8 37 GTTGCAATAAGACTCTAAGAGAATTGAAAC # Left flank : GTAGAAACAACTAAACGCCTTCTTTTAGATTGCATCTCGTTCACATCCCTGTTTTTCTTGAATTTTCTGTTAATCGTTTCAGAATTTAAAAAAGAACTCCGTTTGACCCATTGGAAGTCTTTAATAACAGTTTGTGATAGTGTTACTTTGAGTTATAAAATTTCAAGTTAATTGTAACGAAAAATTTTAGAGATATGGGAATTGACGTGTAAGGTGCCCTCAATTCTGTCGATTCCTGCCCTGATATGTCTATTATCGGATTGGACTGGTTTTTTGCTGTTGGAGATGATAAAAAGGCTGCTCCGGGCTTTGGAACTCTCCAGCGCTGTTAATGGGTTCTCTGGAAAAAACGTCGAGAGGGTCTTGTCCCTTGTGTTCAGTTTGCATATCCATTAAAAAGCGGACAGCACATTGTCGTTTAAACTCCCCTCCGCAGAAAGACTTAAATATTTCCAGCTTTCTTAATTCTTTCTGAGGCAAAAGGGGGTAAAAGCCGCCCT # Right flank : TACAAAAGCTCTCCAAAAAATAAATCCTCCTTCGTCCCCCCAGCCTTCCTGAAGACCTTCTCGCTCCAGCTTACGTTTCCAACGCTTCTCGGCCAGTGGGCATCGCTGGCAAAGGTGAGCTTTATACCTCTTTTTATGCACGCCCTGATGAAGTCCAGTTCGGGGACTTTATAACGTGAGCTTATCTCGAAGGCCTTTCCATTCGCTTCGGCCAGCTCTAGTATCTCCCTCAGGCCCTCCTCGCTTGGATAGCCTGTGTAGGGGAAGCTCGCCCCGAAGTGGCCGATTACGTCAACGTTCTCGTCTTGGAGGGCGAGCTTAACGAGCTCGACGTGTTCCTCCGGCGTCTCCACCCACAGGTGAACGCTTGCTATCACGTAATCAAGCTTCTTGGCTATGTCCGTGGTTATATCGACTCCCCCGTGCATTATATTGGCCTCCACTCCGGCTAAAACGACGAGCTCGGCACTTTCGCTCCACTGGCGTATCTCTCTGACGTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 110640-111951 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUN01000009.1 Thermococcus sp. GR5 NODE_9_length_130895_cov_64.349344, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 110640 30 100.0 36 .............................. AAAGCATATCTTCCATACCCATAGTGCCGACCTCCT 110706 30 100.0 38 .............................. AGCCCGTACTGTCTTTTTGGCTGGTCTATGAAGCGAGC 110774 30 100.0 39 .............................. TGCTGCCAAGCAAGCAGAGGGTCGACCCTCTCCTCCTAC 110843 30 100.0 37 .............................. AGGCCTTGGAAAGGTACTTCAAGGTCAAGGAAGGTCC 110910 30 100.0 37 .............................. ATAGCGCTTTTTATCAACAAAAATCTGTGTTGTGCTC 110977 30 100.0 37 .............................. AGGTAACCAAAGAGCAACGTGAGCGCTAGGCCGATGT 111044 30 100.0 36 .............................. ACGCTTCTGTTCCTTATCATAGTCTCCGAAATACAT 111110 30 100.0 39 .............................. CTAACAGGGCAATCGTCGTGCTGAATTTAGTCATTGTTG 111179 30 100.0 38 .............................. CGAACAGGCCGCGCAGGGCGCCGCGCAGGCGAGCGGCG 111247 30 100.0 38 .............................. TAGTTTATACTGTAAGGCAAAGCCCAGAAAGCGTTGAT 111315 30 100.0 37 .............................. TTTTTTCCCTTTCCCCATCACTCAACCCTCCTTAGCT 111382 30 100.0 38 .............................. TGAAGTCAAACGTGCTGACGGCTCCGCCCGTGTTCTCG 111450 30 100.0 38 .............................. GGACGGAAGTTATGCGGGCGGCGAACTATGGGCGTTAT 111518 30 100.0 37 .............................. ATTGGTTCTGAACTGGCGCAAGGTGGCGCTCGGCGTC 111585 30 100.0 36 .............................. CGCAGAGGACGTGTCCCTCCCTCGCTATCACTAGAG 111651 30 100.0 38 .............................. TTGCACTGTCCTTCACACTCATTGCTGCGGTCGTGCGG 111719 30 100.0 37 .............................. GAACATGACAAAGCTCTACACGCTCGACAACGGCTCG 111786 30 100.0 37 .............................. GTCTAACGGTTTCCCTCATTTTGCCCCTCAACCTATG 111853 30 100.0 37 .............................. TTCAATCTCTGCGAGCTTTTTGTATATCCAAACTACC 111920 30 96.7 0 .........................T.... | C,G [111945,111948] ========== ====== ====== ====== ============================== ======================================= ================== 20 30 99.8 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : CTGAATAAGGTCTTTTAGGGATTTTGGAAGGCAGTATCAAGTTTGGAGGGGCACATTTTGGAACTGGCGTACTCTGAGGATTTAAAAGGAAAAACATGGCACTGTCGTCGGATGGGAAGTCTTTAGTAACATAAAGTAATTATAAAACTTAATGTTGCATCAAAGACATTTGATGTAACGAAATTTTTTCTAAAAGTTAAGATGAAACTTCATGGGCCTCCAAAAAGTCAGCAACCTGTTTAAACTCGGCGTTTTTATAACCCAAAGGGTCGAATTGCTCGTTAAGTCAATCACAGCGATCTCTATCCTCTGGAACTTACAATGATTACTACACACAACACCAGAAAGACGTCTTGGAGCTTTCTATTCTCCAATTGATCATTTTAATCCGGAGATTTCCACGGCCATATAGATACGCATTAGCAGACCTCCGGAGAAAGGCTTATAAAAACTAAGCTCTCATAATCTTTTGTTAGGCAGAAGAAGGAAAAAGCCGCCCT # Right flank : GTTCTTCTGGGAAGGAATTAATTACATAATTCTACAATAAATCAATAATCTAATTGTGCAAAGATAGATCTGGAGGGAAATCGCAGCAAATTAGCGTTAAGTGGAAGGCACTATGAAACCCAAAGAAACAGAAAAGGAACAAAATCGCCCTCACTCGAGGGCAGCCAAAAGCTTCTCCATGAACATCTTCTCCGGGTAAGCTCCCTCGAACTGAACCTTGTCCTCGCCGTCCACCTGGATGACGATCTTCGGGACGGCCATGACACTGTACTGGTCAGCCCATTCCGGATACTCGATGGCCTCAACCATGTCTCCCCTGATCTTGCCCTTGCCGGCGTTGGTGTTCTCGATGGCGAACTTGTGGGCCATCCTGACCGCGAGCGGGCAGTATGGGCAGGTCGGGGTGACGAAGACGAGTATCCTGACGTCCCTGTCGACCTTGGCAAGCTCCTCCTTCGTATCAGGCATGAGGTCAGTCTGGGCGTTGCTGACATCGACGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 419-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUN01000017.1 Thermococcus sp. GR5 NODE_18_length_544_cov_0.335731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 418 29 100.0 38 ............................. CATTTCAGAAGTATCTCGTCTAAGAGTTTCTCTTCAAC 351 29 100.0 38 ............................. CGGAATTGGTAAAGCTCAAGGAGGAAAATCGGAGGCTC 284 29 100.0 37 ............................. GTGAGGATAATGACGAAAAGAAGCACTATTTTCGTGA 218 29 100.0 38 ............................. GTGTGTTGCCTCGCCCAACCAAGGCGCTTCTTGAGAAC 151 29 100.0 38 ............................. GCTCTTTTTTACAAATAAATTTAAGGAGGGTCTAAAAC 84 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 100.0 38 GTTGCAATAAGACTCGAGGAGAATTGAAA # Left flank : GGGAGTGCCCATCAAGCGGTTTGGACAAGCCACAAAGGGCCCGGGTTAAAGTCCGATTTCCAGAAAGGCTTAAATATCGGAAGGTCCGTCTTTCTCTGTTAGGCGAAAGGGCGAGTTTCGCGCCC # Right flank : AGTCGTTGGGAAATAGAGCCCGTAGTATTGCTTTGTGTTGTACGTTGCAATAAGAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 141206-139452 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUN01000002.1 Thermococcus sp. GR5 NODE_2_length_273499_cov_59.022435, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 141205 29 100.0 37 ............................. ACCGGCTTCTTTGCACCGTGTTTTTTAGTATGTAAGT 141139 29 100.0 35 ............................. ACGCCGACCAGACCAACACCCGTACCATTCGTCTA 141075 29 100.0 35 ............................. ACGCCGACCAGACCAACACCCGTACCATTCGTCTA 141011 29 100.0 37 ............................. CTTTTACCTCGAGGAGCATGGAGAGGGTTACTAAAAT 140945 29 100.0 38 ............................. CATGATTTTTCCCTTCACTAAGATTACTTCGTGCCTGA 140878 29 100.0 37 ............................. CTTTGCATCTGCATCAAAATCACCAACACTTCTAAGA 140812 29 100.0 39 ............................. CAGATGTAGGGCTGGTAAGGGCTCCAAACCTAAACGCAT 140744 29 100.0 37 ............................. CAGGAATGCCAGTGCAGTTATCACTCCAACAAGCTCT 140678 29 100.0 37 ............................. TTCATCCGGCAGCTCGACGAAGAGTCAGCGAGGTTGG 140612 29 100.0 38 ............................. TCAATGGCTCCTATGAGTCTGGTTGCAGTGAGGTACTC 140545 29 100.0 37 ............................. AAGCAAAGAGGCTTATCAGTGCTGTGAGATTTGAGTC 140479 29 100.0 36 ............................. CTTACCTCAACGCGACGCTCTTCTGCCCGCTCGACG 140414 29 100.0 36 ............................. TCCGGTCTCGAAGTCATAGCGGCCTCTGCAACGCTC 140349 29 100.0 38 ............................. TTTCCCCAGCTGTTGTGATGCCGGTCGTCTCCTTCTGA 140282 29 100.0 40 ............................. TCATGGGCAACGTTGATGAAGCGATGAGGGAAAAGCTTGC 140213 29 100.0 37 ............................. TGACTCCAGGCTCATTCGGCTTTGGGACTTCAATGCC 140147 29 100.0 37 ............................. TGGTTGTACATGGTCTGAGTATAGGCCTGTGCGATGA 140081 29 100.0 38 ............................. CTGAAACATCTTTAGCCATCTCCTTAAGCTCTTCTGGA 140014 29 100.0 37 ............................. CTGGGAGTTTGCTGAGGAAGAGCCTGGCTTTGACCTC 139948 29 100.0 36 ............................. CGTTTCTGAAGTGTCGGGCCAATACGCAAAAATCCA 139883 29 100.0 38 ............................. ACATCTGGAACAACCTGCCAGTGCTTGGTCTTGTCGGC 139816 29 100.0 37 ............................. TGACAGTGTATTGGTCTATGTTTGTTGGATCGAGAGT 139750 29 100.0 38 ............................. ATCGGCTTTGGCCGAAAGAGATTTTTCCAGCTCTTTCT 139683 29 100.0 38 ............................. ATAATCGCGGCTGTCTCTTTCGGGCTGTGATTAGTCGT 139616 29 100.0 38 ............................. ATAATCGCGGCTGTCTCTTTCGGGCTGTGATTAGTCGT 139549 29 100.0 40 ............................. TCATAGTAGGTGTATCCACCGAAGATGTGAACCCTTGTGA 139480 29 89.7 0 ........A...............A..G. | ========== ====== ====== ====== ============================= ======================================== ================== 27 29 99.6 37 GTTTCAGTGGGACAGAATTGTGTGGAAAC # Left flank : AGAAGTGAAAGATTGTCGCCCCGAAATTATGCTCTATCATGTTCTATGTTCCGTTTTTGGCGCTTTGAGGGTTTTACAGGGACTACATCCCCGGAAAAAGGCAGACAACCCCGTGGAATTCAGAAAGCACTACTTACAAAACATAACAAGAAGTTACATTAGATACCATATAGTGTAACCAATTTCCGGGCGGAATGTCAATCAAGCCCGCTCGGCGGCCGAAAAGTATCGATCCCCGATATAATTGAACGTTTTTGACAATCTTGCCGCATTCGGGCAGACACTCCAAAATACGGGCCGCTTCGGGCTCTGGAACTCTCATGCACTGCAAAGTACATTGAGAATTTCGGCCCCAGAGAAAAGGCACCCACCCCAGAAAAGGCCGGAAAAGCGGCAGATTCCAGGGCTTTCAGGGGTCCCCCAGTAGGGCTTTCCAGAAACACTTAAATATCCGGGGTTACAGAGGATTCTGTTGGAAAAACAGGGTGAAAAAGTGTCCT # Right flank : CCCATTACTGTCCCGCTTGGTTTCCGTAGAACGGCTCGTATGGCAAGAGCGGGAGCTAACGAACGAGCTGAAAGCCTGACCGGAACGTTTCTTTAGAGTCAGCGGATATTCAAAAAGAAATAAAACCTGATTTCCACGGGGTTAGAAGAAAAAGGCATTCAACAATAAGAGTTATAAAGATAGAGCATGCACGTTAAAGACGGTAACCTTCCGGGGAGGATAGATTATGCGCATTAAGGTCAGTTTTTATCCCCCTGATGGTGGGTTTATTTATCCCAACAAGCACGCCGTTCAGGGGTTCATCTACAACATGCTGAAGGGCACGGAGTACGGGGAAAACCACGACGCACCGAGGTTCAAGTTCTTTACATTCTCGGACTTTTTCATAGACTCCCTGGGAAGGCCGACCTTCTTGGTCTCCTCCCCGGACGAGGGCTTCGTCAGGGCACTCCACTCCAGCCTGAAGGACAGGGTCAGGGTATACATAGGGACGCAGGAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTGGGACAGAATTGTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 227712-224982 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUN01000002.1 Thermococcus sp. GR5 NODE_2_length_273499_cov_59.022435, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 227711 29 100.0 37 ............................. TAGTATATCACAAGGGGCTTCGCCTTGTTTTCGAAGT 227645 29 100.0 40 ............................. TAAGCTCCCGTGAAGATAGAAAATATATGGTATTTAGCGA 227576 29 100.0 38 ............................. TCGGGTTAATCTTATTCATATTATATATTATGAATAAG 227509 29 100.0 39 ............................. TTTTATCTCAATCAAGACTTTCTCCTTCCCGTTCTCGTC 227441 29 100.0 40 ............................. TTACAGGTGGGAAATTCTAAATTTTGTTATCGATGTGCTG 227372 29 100.0 42 ............................. TAAGGAAGGTGTCACCGTCACCGCAGTGGCGCAGATGCTCAA 227301 29 100.0 38 ............................. TAGGCACTACTGGGTCTCCGGAACTCAGGCCTCTGGAG 227234 29 100.0 37 ............................. TTGCTGCGTGCTCAAGAGTGTAGAACACAACATCAAA 227168 29 100.0 39 ............................. TGGGATCCACCTTCCGCTTAAAGTCCTTAGTAAAGCGAG 227100 29 100.0 40 ............................. TGTGGTACGAATACTCCCAAAGCGCTATCCGCATCTCAGT 227031 29 100.0 38 ............................. TGTAGGAGGTGCATTGCGTTTTCCCTGAGCATCTCCCG 226964 29 100.0 37 ............................. TGAGAAGTCGTGGCGTCCTTGTCAGACGACTTCTACC 226898 29 100.0 45 ............................. TAAGATCTCCTTTATATCCTCCTCCGTGGCGAAACCGTGTTTCAA 226824 29 100.0 37 ............................. TGCTCTTGATTATTGCACCAGCGAGGGCTTTTCTCAT 226758 29 100.0 37 ............................. TAAAAACTCGCCACTCCCTGATGTTCTCCTTGACGAC 226692 29 100.0 39 ............................. TCTGCCAACCCGCCTGGAGGCAACTTCAATCCAAATAAA 226624 29 100.0 39 ............................. TACAACTCTATATTCAGACCCCCACAAGAGATCCATGTC 226556 29 100.0 39 ............................. TCCCTATTGGGTGATGGGTGGCTATATCGTACATAGTGG 226488 29 100.0 38 ............................. TCCATAACTTCCTCCTCTTATCCACAACCATTATGAGA 226421 29 100.0 38 ............................. TCGGCACCGTTCGGGGTACGGCTCGCTTCATAGACCAG 226354 29 100.0 38 ............................. TGCGCTTATAGTGGCGCCAGGCGTATCTATAGTGCCTC 226287 29 100.0 40 ............................. TTCTAAAACAAGCGAATCGCTATAATCAGGGCTCTTCGGC 226218 29 100.0 37 ............................. GGATTACCTCGAGGGTCTTCATGAAGGTCTTAACGTC 226152 29 96.6 38 .................G........... GAAAACCAGCCGAGTAAATAATCCTCTGCGAGATGTAG 226085 29 100.0 38 ............................. GTGGATGAAATCACGCCAGGAGAGCTTGAATTCATTTT 226018 29 100.0 39 ............................. GACCTCGACGAGGTAGTCGTACAACTCCATCAGCTTGCG 225950 29 100.0 39 ............................. GTTGGCTCTGCTGGGGGTGATCCCGTGATTTGGGTCCGA 225882 29 100.0 38 ............................. GAATTCACAAGCAGTGATACTAGCTTATTGGTTATCCA 225815 29 100.0 37 ............................. GCGTGGCAGGTGGCGGTATAGCCATGCGGCGAAGGTG 225749 29 100.0 39 ............................. GCACTATAGTGTCATCGAGCGCAATATAATCCTTCCAAA 225681 29 100.0 36 ............................. GGTCGTCAATCTCGGATACCCCGTCGTGCTGTTGAA 225616 29 100.0 39 ............................. GCTCAGCCGTAGCCCCGTAGTTCGTGCCGTCCAGCTCCT 225548 29 100.0 37 ............................. GACAAACACCCATACACGTGGCGACCACTGGGTGTAC 225482 29 100.0 39 ............................. GTGCTTCAACCACGTGATGATTTTCCTAGCAGCCAGCCT 225414 29 100.0 38 ............................. GTTAAGAGGAACTCATGAGACTCCCTCCAGACCTCCAG 225347 29 100.0 39 ............................. GAGGGGTTTTTGATGTGCAGCGTAACAGCTGCAACCTGT 225279 29 100.0 38 ............................. GGATATGGGAAAAAGAAGAGCCGATAAACAAGGTTGGG 225212 29 100.0 39 ............................. GTCTTTACGACCTCGACCCTGTCATAAAGTATCCGAACC 225144 29 100.0 38 ............................. TGTCACCCCCTCTGTGCTAAACAAGTATTCAAAATACA 225077 29 100.0 38 ............................. GACAATTAAAGGTAGTAGGACGGGACACTCTTTTTAAT 225010 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================= ================== 41 29 99.9 39 GTTTCAATAAGACTCTAAGAGAATTGAAA # Left flank : GGGAGCTTATAATCGTTGCCCGAAGGGTTTTCGGAGCAGATTCATACTGCGGCATCTTTGGCCCTCTCACTTCAACGTCCAGAGCTTTGGGAAAGCGGGACGGTGAAGTGTTTGGAAGTCTTTAGTAACGCCTGGTAATTATCGGACTTTTTGTTACGATTTTCATCTTGGAATGTAACGAAATTTTTTCAGAGTGTTGAGAAGAGCATGATGCGACGGTCTCCAGCCTATTTTCTAAGGGAAACTGCTCTTTTTGACTGTTGCATGGTTTTGAAGTCTGGAGATTAATTTTTCTCTTTTCTTTGGGCTTTGGAAGTCTCGTAAACATTCTTGTTCACAGGATTTTTTAAGCTGTGCAGGCCTGAAATTCTTAGAGGAGGTTCTTGAAAGATCTCAATGAAAGAATCCTCATAGCGCTGAAACTACCCCTCCGCAGAAAAACTTATAAGATTTAAGGCATTTTATACCCCTATAAGACGAAATAAGGAAAAAACTGCCCT # Right flank : TAACGATGATGACGGACTGCTCGAGGTTTTCGCGAGGTAGTTTCAACAAGAAATAAGAAACCAAAAAGTGAAAAGTGCTTTTACTCCATCCTCCTTCCGAGCAAGCGGTTTATTCTCGCCCTTATGCCTCTGTTGCCCTTCACAAGCATAACTGTCTTCGGGCATTTGCTCGCTACCCTTTCAGGCACTTCCCCAAAGAGTAGCCTCTTGAAAAGGCCCTCCCTCGTTGCCCCCATGACCACGAGGTCGTGCTTCCTGCACTCATCAAGTATCGCATTTACCGCGTCGCTTTTGTTCACTATCTTCAGCTCCGCGTTTTCGATCCTCTCCATTACCGGCTTCAACTGTGCCCTTACCTTCTCTTCCAGCTTGCCGGTGGTGTTGACGCTGAGCACAGTAACTCTTGCACCGTACGCATCGGCGAGGATCGAGACGAGCTCCGCACTGATGGCGCTATGCTTTCCTCCCCTCGTCGGAAAGAGAATGCTCTTAATTTCTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAAGAGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //