Array 1 1366-1598 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952598.1 Aggregatibacter sp. oral taxon 458 str. W10330 Scaffold241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1366 33 100.0 34 ................................. ATTTTTACCATCAAAGAATTGCTGAAATGTGGCG 1433 33 97.0 34 ................................A CTTTGTCAATAAACGGTTGACTTGTTACGCCCGT 1500 33 100.0 33 ................................. AAACCATTACTAAGCCAAGAAATGGCAATATCG 1566 33 97.0 0 ................................N | ========== ====== ====== ====== ================================= ================================== ================== 4 33 98.5 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Left flank : TGAATGCGATGTCACGCCTGACCAATGGGTCGCGTTGAAAAACAAACTGTTGGAAATCTACGACCCTACGTGCGATAGCCTGCGTTTTTACCATTTAGGCAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTGGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGACAATGTGGCCGTTATACTTACCAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATTCGCTGATTTTTATTGCTTTTTTATGTAGGGAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACGCTGTAGTAGCGTAATAGGAGGCGGACTTTTGCGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACACCAATGACTGGTTTTTAGACCTTGAGCATGGTTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACAAACAAATCTACATCATCTATATTTTCGGCTGTTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACATTAGTAGCTCTTGTTTTACCTGATCCATAATGGGGCAGCCACCTTCGGGTGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1699-1929 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952598.1 Aggregatibacter sp. oral taxon 458 str. W10330 Scaffold241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 1699 33 97.0 33 ................................G CTGTAGTAGCGTAATAGGAGGCGGACTTTTGCG 1765 33 100.0 33 ................................. CCAATGACTGGTTTTTAGACCTTGAGCATGGTT 1831 33 100.0 33 ................................. AACAAATCTACATCATCTATATTTTCGGCTGTT 1897 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 4 33 99.2 33 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : TAATTCGCTGATTTTTATTGCTTTTTTATGTAGGGAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACTATTTTTACCATCAAAGAATTGCTGAAATGTGGCGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACACTTTGTCAATAAACGGTTGACTTGTTACGCCCGTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACTAAACCATTACTAAGCCAAGAAATGGCAATATCGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG # Right flank : ATTAGTAGCTCTTGTTTTACCTGATCCATAATGGGGCAGCCACCTTCGGGTGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCACCTTCGGGTGGCTGTGTGTTGAAACGGCAAAATTGGCGAACTGGCGTACGGCATTGTTTGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACGAAAAGCGCAACGCCACACCCGCAAAAAGTGAAATTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACATTACCAGAGAAATTACGAACATAATTAATTGAGCGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACAGAGCTTGAGCAAGCAGAGCAATCAGACAATCAAAGGCAGCCACCTTCGGGTGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 3 2092-2326 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952598.1 Aggregatibacter sp. oral taxon 458 str. W10330 Scaffold241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2092 33 93.9 34 N...............................G GCAAAATTGGCGAACTGGCGTACGGCATTGTTTG 2159 33 97.0 35 ................................G AAAAGCGCAACGCCACACCCGCAAAAAGTGAAATT 2227 33 100.0 34 ................................. TTACCAGAGAAATTACGAACATAATTAATTGAGC 2294 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 4 33 97.7 35 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : TGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACGCTGTAGTAGCGTAATAGGAGGCGGACTTTTGCGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACACCAATGACTGGTTTTTAGACCTTGAGCATGGTTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACAAACAAATCTACATCATCTATATTTTCGGCTGTTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACATTAGTAGCTCTTGTTTTACCTGATCCATAATGGGGCAGCCACCTTCGGGTGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AGAGCTTGAGCAAGCAGAGCAATCAGACAATCAAAGGCAGCCACCTTCGGGTGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCACCTTCGGGTGGCTGTGTGTTGAAACAGACCTACATCTTGGTCACCGCAACATTCCAAAGTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCTGATGTAATTTGTGTAGACTATTTGGGTATTTGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACTGAAGTAAAAGTTCATATTCTTAATAAGAAAAATGAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACTTATTTGATAACCTCCGTCAAAAAGAACTATTAAAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 4 2488-2788 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952598.1 Aggregatibacter sp. oral taxon 458 str. W10330 Scaffold241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2488 33 93.9 34 N...............................A GACCTACATCTTGGTCACCGCAACATTCCAAAGT 2555 33 97.0 33 ................................C TGATGTAATTTGTGTAGACTATTTGGGTATTTG 2621 33 100.0 35 ................................. GAAGTAAAAGTTCATATTCTTAATAAGAAAAATGA 2689 33 100.0 34 ................................. TATTTGATAACCTCCGTCAAAAAGAACTATTAAA 2756 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= =================================== ================== 5 33 97.0 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Left flank : GTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCACCTTCGGGTGGCTGTGTGTTGAAACGGCAAAATTGGCGAACTGGCGTACGGCATTGTTTGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACGAAAAGCGCAACGCCACACCCGCAAAAAGTGAAATTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACATTACCAGAGAAATTACGAACATAATTAATTGAGCGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACAGAGCTTGAGCAAGCAGAGCAATCAGACAATCAAAGGCAGCCACCTTCGGGTGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCACCTTCGGGTGGCTGTGTGTTGAAACATTGACTTATATGACCAAGTTAACAATGCGTGAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACTTTATTAATCAAAGAAGCACAACTATTAAATTCCGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACATACCTCACATCAAAGCCACTTGCAGAATGCGATCGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCACCTTCGGGTGGCTGTGTGTTGAAACAGCAATCTCGCCCCTTGTGAGGCAGATTGTTGTGCAGCCAC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2886-3049 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952598.1 Aggregatibacter sp. oral taxon 458 str. W10330 Scaffold241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 2886 33 97.0 32 N................................ TTGACTTATATGACCAAGTTAACAATGCGTGA 2951 33 97.0 33 ................................T TTATTAATCAAAGAAGCACAACTATTAAATTCC 3017 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 3 33 98.0 33 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : GTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCACCTTCGGGTGGCTGTGTGTTGAAACAGACCTACATCTTGGTCACCGCAACATTCCAAAGTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCTGATGTAATTTGTGTAGACTATTTGGGTATTTGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACTGAAGTAAAAGTTCATATTCTTAATAAGAAAAATGAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACTTATTTGATAACCTCCGTCAAAAAGAACTATTAAAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATACCTCACATCAAAGCCACTTGCAGAATGCGATCGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCACCTTCGGGTGGCTGTGTGTTGAAACAGCAATCTCGCCCCTTGTGAGGCAGATTGTTGTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACTAATCCAATTAATAATGCGTTTTATCAATCGCCAAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACGGTATCATCCAAACTTTGCACATTGAGCTTAATTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCGTTTGTTGTGCGGATAACACGGCAAGTTTTGGAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACTAATTAGTCCGAAGAAACAAGCGACACAAGCGGTTGCA # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.10,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 3215-3511 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952598.1 Aggregatibacter sp. oral taxon 458 str. W10330 Scaffold241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 3215 33 93.9 32 N...............................A GCAATCTCGCCCCTTGTGAGGCAGATTGTTGT 3280 33 100.0 34 ................................. AATCCAATTAATAATGCGTTTTATCAATCGCCAA 3347 33 97.0 33 ................................G GTATCATCCAAACTTTGCACATTGAGCTTAATT 3413 33 97.0 33 ................................C GTTTGTTGTGCGGATAACACGGCAAGTTTTGGA 3479 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 5 33 97.6 33 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Left flank : TGAAACTTATTTGATAACCTCCGTCAAAAAGAACTATTAAAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCACCTTCGGGTGGCTGTGTGTTGAAACATTGACTTATATGACCAAGTTAACAATGCGTGAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACTTTATTAATCAAAGAAGCACAACTATTAAATTCCGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACATACCTCACATCAAAGCCACTTGCAGAATGCGATCGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TAATTAGTCCGAAGAAACAAGCGACACAAGCGGTTGCAGCCACCTTCGGGTGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACTCTTAGCCACAATGAAATAGTTTTATCAACAGAAAGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCGGCAAGCAACTGTTGTATCCATCGGCTATCAAAGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCGCTTTTTGTTAAGGCTTTATCCTTAACTCTTGAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACGGCTCAATCCTGTTCGGCTCACGCTTTGCACGTTCGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 7 3677-3977 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952598.1 Aggregatibacter sp. oral taxon 458 str. W10330 Scaffold241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 3677 33 97.0 35 ................................T CTTAGCCACAATGAAATAGTTTTATCAACAGAAAG 3745 33 100.0 34 ................................. GGCAAGCAACTGTTGTATCCATCGGCTATCAAAG 3812 33 100.0 33 ................................. GCTTTTTGTTAAGGCTTTATCCTTAACTCTTGA 3878 33 97.0 34 ................................G GCTCAATCCTGTTCGGCTCACGCTTTGCACGTTC 3945 33 97.0 0 ................................N | ========== ====== ====== ====== ================================= =================================== ================== 5 33 98.2 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCACCTTCGGGTGGCTGTGTGTTGAAACAGCAATCTCGCCCCTTGTGAGGCAGATTGTTGTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACTAATCCAATTAATAATGCGTTTTATCAATCGCCAAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACGGTATCATCCAAACTTTGCACATTGAGCTTAATTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCGTTTGTTGTGCGGATAACACGGCAAGTTTTGGAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACTAATTAGTCCGAAGAAACAAGCGACACAAGCGGTTGCAGCCACCTTCGGGTGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCACCTTCGGGTGGCTGTGTGTTGAAACTAGAGATAATGCGAAAATGAGCGGGAAAATCGCTAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACAAAACCAAATTTAATAGACTAACGTAAGAGGACTAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCTAATATTTCTGGTTTACAAGCAATTCAAATGGTTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACAGATGACAAGTTCGCAGAATTGTTGCGTAACTTAGGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCACTTCTACGGCTAAACTGGAGAGTGTTTTATAATTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACAAAACCTTTAAAGCAGTTTAAAATCCAAACGCC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 4142-4511 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952598.1 Aggregatibacter sp. oral taxon 458 str. W10330 Scaffold241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 4142 33 100.0 34 ................................. AAACCAAATTTAATAGACTAACGTAAGAGGACTA 4209 33 97.0 34 ................................C TAATATTTCTGGTTTACAAGCAATTCAAATGGTT 4276 33 100.0 35 ................................. GATGACAAGTTCGCAGAATTGTTGCGTAACTTAGG 4344 33 97.0 35 ................................C ACTTCTACGGCTAAACTGGAGAGTGTTTTATAATT 4412 33 100.0 34 ................................. AAACCTTTAAAGCAGTTTAAAATCCAAACGCCTA 4479 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= =================================== ================== 6 33 98.0 35 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACTCTTAGCCACAATGAAATAGTTTTATCAACAGAAAGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCGGCAAGCAACTGTTGTATCCATCGGCTATCAAAGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCGCTTTTTGTTAAGGCTTTATCCTTAACTCTTGAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACGGCTCAATCCTGTTCGGCTCACGCTTTGCACGTTCGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCACCTTCGGGTGGCTGTGTGTTGAAACTAGAGATAATGCGAAAATGAGCGGGAAAATCGCTA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCGGGTGTCACTGGTATAGGTCATGTTATGGCAGTAAGCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACAAGTTGTAATGGTTACAGGAGACAGAAAGGAAACTGCAGCCGCCTTCGCGCGGCAGTGTGTTGAAACATCGCTGATGTATTGGTTGAATCCAAGTTTTTCAAGCAGCCACTTTCGGGTGGCTGTGTGTTGAAACTCACCGCCACCGTTATCCGAATAATAGATAGCCGGGCAGCCACCTTCGAGCGACTGTGTGTTGAAACTATGTATATCTTTTCACAAAACAACGTTACTCGCGCGGCTGTGAGTGATGTTTTCGTGCAACAAGTTGCACGCTACGAGGGCATTTTCTAGGTCTTGCGTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 4677-4909 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952598.1 Aggregatibacter sp. oral taxon 458 str. W10330 Scaffold241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 4677 32 100.0 35 ................................ AAGTTGTAATGGTTACAGGAGACAGAAAGGAAACT 4744 32 96.9 35 ...................A............ ATCGCTGATGTATTGGTTGAATCCAAGTTTTTCAA 4811 32 87.5 35 ......A.T....G.T................ TCACCGCCACCGTTATCCGAATAATAGATAGCCGG 4878 32 90.6 0 ......A......A...A.............. | ========== ====== ====== ====== ================================ =================================== ================== 4 32 93.8 35 GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC # Left flank : ACCAAATTTAATAGACTAACGTAAGAGGACTAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCTAATATTTCTGGTTTACAAGCAATTCAAATGGTTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACAGATGACAAGTTCGCAGAATTGTTGCGTAACTTAGGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCACTTCTACGGCTAAACTGGAGAGTGTTTTATAATTGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACAAAACCTTTAAAGCAGTTTAAAATCCAAACGCCTAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCGGGTGTCACTGGTATAGGTCATGTTATGGCAGTAA # Right flank : CTATGTATATCTTTTCACAAAACAACGTTACTCGCGCGGCTGTGAGTGATGTTTTCGTGCAACAAGTTGCACGCTACGAGGGCATTTTCTAGGTCTTGCGTTGTCAGTTACGTTTAAACGTTTTAAAATCGCCTCATGTGAGTTCAGGGTTAGCGTTGAACTTGATCTTGAATGTTAAATTATCTGCCATGAGGTAACCTTTATGGATAAAGACATTGATGTCCGTTGGATTGGTTGGGTGGTTGTGTTACTACCGTATGAAATCGGCTTATTGTTTATGTTGTTCGGTGTTATCACCTTCGGACAAGTTCTGTTTTTCGGCACCTTGTTTTATGCCCTTGTATTTGCTCTAGTGGTGTTTTTTAAAGCTCCTCTTGCTACTATACTTGGTATGCTTATCGGCTCAAACCTCTAAAAAAATGACCGCACTTTTAAGGTGCGGTCAACTCGTCTATATAGCCTTGCACCTCTTTCCCCACCATTTACCCCAAACGACACAT # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.40,-4.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 119891-119720 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952605.1 Aggregatibacter sp. oral taxon 458 str. W10330 Scaffold35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 119890 33 100.0 36 ................................. AGATCTTGTTGTCTTTCTTTGATAGATACTAAGAAC 119821 33 100.0 36 ................................. AGACTCATTAAACCAATCACAACCAGTTTCGCTATC 119752 33 97.0 0 ............C.................... | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 99.0 36 GTCGAAAGACCCTGCCCTGTTCTAAAGGGATTG # Left flank : AGTGCTTAACGGAGGTTATGCAGATTTTCCATAAAAAAGAAGATGATCTCCGAATTTATCCCTTACCCCATAACTGCTCTCAATGGCGCTTAGGAAAAGCGAGCCTGCCCCAAGGCATTATTTGGACAGCATTACCCATCAGTTTAACGTTATAACAGAGGTGAAAATGTGAAGAAACTGAGGTAAAATTGCGTGCAAAAGTCATATAAAAAACGTCGTTTTTTATCACCGCACTTGTAACAAAGATAAAAAAAGAAAATGGATAAAATCGTTCAATATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGATAAAATCGTTCAATATTTAATCAAATCTATACCTTACTTTTCGTATGAGGGAAAAAATTGGGAAGCGATCTTCTCAAACCTTATCCAGCAAGGCACCAAACCACCCCTGCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGAAAGACCCCGCCCTGTTCTAAAGGGATTGAAACTTGCTTGTTACTGCCCTTAACTCACCGAGGTTAGTCGAAAGACCTTGCCCTGTTCTAAAGGGATTGAGACCGCTAGAAGCCATAATTGAGGCGGTGTTCAGAGGTCGAAAGACCCCGCCCTGTTCCAAAGGGATTGAAGCATTTAAAGTGAAACCGGGTAAGAATCCGCAAGAGTGTGTGGTATGTAACACCCAAAAAACCGGTAATACGAAAGGTTGAACTTCAAATTGATCAGTAGGATGGTAAGTACAAAAGGGAGGTGAGTAACATCCCTTTTTATACTGGTTTTAGACTATTTAATCGCACAGCCTTATTAAGGTTTATATAAAAGGACTTGCACTACAAACAAATAAAACCTATGCT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACCCTGCCCTGTTCTAAAGGGATTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 125291-124826 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952605.1 Aggregatibacter sp. oral taxon 458 str. W10330 Scaffold35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 125290 37 100.0 35 ..................................... GTCTTAAGTTTCTGATGACCTTCGTCAAGTCTACG 125218 37 100.0 35 ..................................... TGATAGCCTTCATCTAAGCGTCTTTCTACTGCTTT 125146 37 100.0 33 ..................................... GCAACTGTAGTGCGAGAAGCTGATTCGATTGAT 125076 37 100.0 34 ..................................... TTCGCCAAAAGTCTTACTAACCAAAAATGCCTGA 125005 37 100.0 33 ..................................... CCAGAACCGAGAGCAACAGCTCCCTTCACAAGT 124935 37 100.0 36 ..................................... CTATTTAGAGAATCTGCTTGACGTTCTAACCACTCC 124862 37 94.6 0 ......................T.............T | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 99.2 34 GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTGAGAC # Left flank : CTACCTAATAACTCATCAAGAGCTTTTAGTTTTTCGTCGAAAGACCCCGCCCTGTTCCAAAGGGATTGAGACTTCAACGCATTCACCTCCTGCGCATTTTGCATGTCGAAAGACCCCGCCCTGTTCCAAAGGGATTGAGACTAAAGTATCTAAAGCGTCTAATTTAGACACATATTGTCGAAAGACCCCGCCCTGTTCCAAAGGGATTGAGACGGTTGTTCAGCTTTGGTTTTAGTTGCAACAGTTTTGGTCGAAAGACCCCGCCCTGTTCCAAAGGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGATAAAATCGTTCAATATTTAATCAAATCCATACCTTACTTTTCGCATAAGGGAAAAAGTTGGGAAGCGATCTTCTCAAGCCTTATCCACCAAGGCTCCAAACCACCCTTGCA # Right flank : GCATAAAAGCGTCCTTGTAATTCGCGTGGATCAGTCGAAAGACCCTGCCCTGTTCTAAAGGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAAAGACCCTGCCCTGTTCTAAAGGGATTGAGGCGTACGGATAGCTTCCACAATGGGCTTTAACATTGGGTCGAAAGACATCGCCCTGCTCGAAAGGGAGAGACTAAAAAATAGCCCTGGCGGATACGCCAGGGCTATTTTTTTATTTGACATAAGAATAAACAAGGTTATACACTAGAATTGTATCATTAAATGATACTTATGAGGAAATTAACATTATGAGATGAGGAGATGCTGAATCTTGGCTTATCTTTTGGTGCAGTAAGAGATAAGAGTTTTGTCAGCTATATGAACTATGAATATGAGACTACAAGTGAAACAATGGGGCAATAG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 125895-125577 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952605.1 Aggregatibacter sp. oral taxon 458 str. W10330 Scaffold35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================== ================== 125894 38 100.0 30 ...................................... AATTGGTCAGACATACAAGAACTTTTGCTT 125826 38 100.0 33 ...................................... ACCTAATAACTCATCAAGAGCTTTTAGTTTTTC 125755 38 100.0 31 ...................................... TCAACGCATTCACCTCCTGCGCATTTTGCAT 125686 38 100.0 34 ...................................... AAAGTATCTAAAGCGTCTAATTTAGACACATATT 125614 38 97.4 0 .....................................G | ========== ====== ====== ====== ====================================== ================================== ================== 5 38 99.5 32 GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTGAGACT # Left flank : CAATATTCACTTAGATAATATTGATATATCGAAAATAGAATCCGATCTTAAACGACTAAAACTCATCTAAAATCAACCGCCCTTGTGGCGGTTTTCTTTTCTATAAATTGTCTATAACATCACACAACAAATCACATCCAATGGCACTTAGGAAAAGCTAGCCAACCCCAAGGCATTATCCGGACAGCATTAACAATGAATTTACCCTATAACAGAGGTGAAAAGGTGAAGAAACTGAGGTAAAATAGTGCGCAAAAATCATATAAAAAAACATCGTTTTTTATCACCGCACTTATAACAAAGATAAAAAAGAAAATGGATAAAATCGTTCAATATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACCCCGCCCTGTTCCAAAGGGATTGAGACTTTAAGTGAGGTGTGAAATCCCCGGGCTTA # Right flank : GTTGTTCAGCTTTGGTTTTAGTTGCAACAGTTTTGGTCGAAAGACCCCGCCCTGTTCCAAAGGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGATAAAATCGTTCAATATTTAATCAAATCCATACCTTACTTTTCGCATAAGGGAAAAAGTTGGGAAGCGATCTTCTCAAGCCTTATCCACCAAGGCTCCAAACCACCCTTGCAGTCGAAAGACCCCGCCCTGTTCCAAAGGGATTGAGACGTCTTAAGTTTCTGATGACCTTCGTCAAGTCTACGGTCGAAAGACCCCGCCCTGTTCCAAAGGGATTGAGACTGATAGCCTTCATCTAAGCGTCTTTCTACTGCTTTGTCGAAAGACCCCGCCCTGTTCCAAAGGGATTGAGACGCAACTGTAGTGCGAGAAGCTGATTCGATTGAT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACCCCGCCCTGTTCCAAAGGGATTGAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 156-387 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952608.1 Aggregatibacter sp. oral taxon 458 str. W10330 Scaffold410, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 156 32 100.0 35 ................................ ACGGTCGAGCGACTGAAAAGGGATTGTGGTGCGGG 223 32 100.0 35 ................................ CACTTATCGCCCTCTTGGCGTAGCTGATAAACAAC 290 32 100.0 34 ................................ AAGCTCAATCGAAGATTTAAAGAAAAAAGTCATC 356 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 35 GCAGCCGCCTCCGCGTGGCTGTGTGTTGAAAC # Left flank : GATAGCGATCTTTATTTTCTTTAACAATTTGGATAAGTTAATCTATTTGTATAACGGCGGTATGGCCGTTATACTTACCAAACTCCTTATCATAAAATCCGTTAGCGAAATACAGTGGTTAATTTGCTGATTTTCCTTGCTTTTTTAGGTAGGGAG # Right flank : CATGCTACCCACGCCGACGGCCGCAATAACAAAAAGGCAGCCGCCTCCGCGTGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAGCCGCCTCCGCGTGGCTGTGTGTTGAAACGGATATAAAACGGAAAGACTGTATATCCGAACATATGCAGCCGCCTCCGCGTGGCTGTGTGTTGAAACCGATAGCACAGAGACCGTCGGCGGAAATAAAACGAGCAGCCGCCTCCGCGTGGCTGTGTGTTGAAACAATTCGACGGCGTTGCCGCAGGGAGAAGAGGAGGCAGCCGCCTCCGCGTGGCTGTGTGTTGAAACATTGGAAAATGAATATACAAATATACACAAATATAGCAGCCGCCTCCGCGTGGCTGTGTGTTGAAACCATTTAAAGCGTTCTTTTGCCACTTATCGACCTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGTGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 554-1123 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952608.1 Aggregatibacter sp. oral taxon 458 str. W10330 Scaffold410, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 554 32 100.0 36 ................................ GGATATAAAACGGAAAGACTGTATATCCGAACATAT 622 32 100.0 35 ................................ CGATAGCACAGAGACCGTCGGCGGAAATAAAACGA 689 32 100.0 33 ................................ AATTCGACGGCGTTGCCGCAGGGAGAAGAGGAG 754 32 100.0 35 ................................ ATTGGAAAATGAATATACAAATATACACAAATATA 821 32 100.0 34 ................................ CATTTAAAGCGTTCTTTTGCCACTTATCGACCTC 887 32 100.0 36 ................................ GAATATCAATCCAAGGGTGAATATTGGGTACTCAAG 955 32 100.0 36 ................................ CTGTTGTGCTTTGATGGTTTGGGCTTGAGCTTGGGC 1023 32 100.0 37 ................................ TCCATTTTCAAAATCACTTTCCCAACTATCTCAATAT 1092 32 90.6 0 ......A...T..G.................. | ========== ====== ====== ====== ================================ ===================================== ================== 9 32 99.0 35 GCAGCCGCCTCCGCGTGGCTGTGTGTTGAAAC # Left flank : ACGGCGGTATGGCCGTTATACTTACCAAACTCCTTATCATAAAATCCGTTAGCGAAATACAGTGGTTAATTTGCTGATTTTCCTTGCTTTTTTAGGTAGGGAGCAGCCGCCTCCGCGTGGCTGTGTGTTGAAACACGGTCGAGCGACTGAAAAGGGATTGTGGTGCGGGGCAGCCGCCTCCGCGTGGCTGTGTGTTGAAACCACTTATCGCCCTCTTGGCGTAGCTGATAAACAACGCAGCCGCCTCCGCGTGGCTGTGTGTTGAAACAAGCTCAATCGAAGATTTAAAGAAAAAAGTCATCGCAGCCGCCTCCGCGTGGCTGTGTGTTGAAACATGCTACCCACGCCGACGGCCGCAATAACAAAAAGGCAGCCGCCTCCGCGTGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : CCGGCAAGCAGTTGTTATATCCGGCGGCTATCAAAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCTGCAAGGTATGGAAAAGACCAAGCGCATTGAAGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACTTGCCATTGCAGCACTTATCTTTTTTATCCCTGGGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACAGCCGTGCGATCAGAATTGGAAGAAATTGATCGCCGCAGCCACCTTCGGGCGGCTGTGTGTTGAAACAAACTTTATGAAATCGCAAAATATTGTGACGAATGCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACTTCTCCGCTTGCTTTGCCGAGTTTGCGGTAACGGGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGTGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1354-1854 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE952608.1 Aggregatibacter sp. oral taxon 458 str. W10330 Scaffold410, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1354 32 87.5 34 ......A...T..G.T................ TTGCCATTGCAGCACTTATCTTTTTTATCCCTGG 1420 32 87.5 35 ......A...T..G.T................ AGCCGTGCGATCAGAATTGGAAGAAATTGATCGCC 1487 32 90.6 34 ......A...T..G.................. AAACTTTATGAAATCGCAAAATATTGTGACGAAT 1553 32 96.9 35 ..........T..................... TTCTCCGCTTGCTTTGCCGAGTTTGCGGTAACGGG 1620 32 96.9 36 ............A................... CCTGTTTGAGCTGTCTTCTGGGTATCCAGGGCACCG 1688 32 100.0 33 ................................ CACGCCGTTTCGCCAATGTCGATGTCAACTTTA 1753 32 100.0 35 ................................ ACGATTGCCAAACGGGCGATCGGCTTTCGGGTCAA 1820 32 81.2 0 ..........T...A............TTTT. | AA,A [1843,1847] ========== ====== ====== ====== ================================ ==================================== ================== 8 32 92.6 35 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : ATTTAAAGCGTTCTTTTGCCACTTATCGACCTCGCAGCCGCCTCCGCGTGGCTGTGTGTTGAAACGAATATCAATCCAAGGGTGAATATTGGGTACTCAAGGCAGCCGCCTCCGCGTGGCTGTGTGTTGAAACCTGTTGTGCTTTGATGGTTTGGGCTTGAGCTTGGGCGCAGCCGCCTCCGCGTGGCTGTGTGTTGAAACTCCATTTTCAAAATCACTTTCCCAACTATCTCAATATGCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCGGCAAGCAGTTGTTATATCCGGCGGCTATCAAAGCAGCCACCTTCGGGTGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCACCTTCGGGTGGCTGTGTGTTGAAACCTGCAAGGTATGGAAAAGACCAAGCGCATTGAAG # Right flank : CGTGCAACAAGTTGCACGCTACAAGGGATATTACATTTTCTAAGTGCTTGTGCGTTGTCAGTTGCGTTTAACCGTTTTAAAATCGCTTCGTATGAGTTCAAGATTAGCGTTGAACTTAATCTTGAATGTGAACGTGAGATTATCTGCCATGAGGTAACCTTTATGGATAAAAACATTGATGTCCGTTGGATTGGTTTGGTGGTTGTGTTGCTACCGTATGAAATCGGCCTATTGTTTATGCTGTTTGGTGCTATCACCCTCGTCCAAGTGCTGTTTTTCGGCACCTTGTTTTATGCCTTTCTGTGGGCAATCGTTGCTTTCTTCCGCAATCCTAAAGATGTCATATTGCTTTTGATTATCGGTTCAAAACTTTAAAAAACGACCGCACTTTAAGATGCGCTGAGTACCGTATGATGAGCATGATATTGTTGTGCGATTTATTGATGGATAATAGGGATAATGGCGCTGTATTTTAATTTTCTACGTAATATAAGATTTAA # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //