Array 1 44552-45662 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLNH010000004.1 Mycobacterium sp. SM1 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 44552 35 100.0 37 ................................... GACCTGGATGGTGGTTTTCATCATCTCTCCCATCATC 44624 35 100.0 37 ................................... GGCGCTGCAAAACGGCATCGACCTCAAATGGCTCGAA 44696 35 100.0 38 ................................... GGACGGTGCCGCCCTCGTGGGCGCGAGCCGCCGAGCGG 44769 35 100.0 37 ................................... GTCGCCTACCTGTCGGGGCTATCAATTTTACCGGCAG 44841 35 100.0 38 ................................... GGCCACGATTGCTTCGCTGGTTTTTATTGCAACCATCA 44914 35 100.0 34 ................................... GGCGGCTCGAGGCGGCGTGCCGGCACTGCTGCGC 44983 35 100.0 37 ................................... GGGTTACCATTTTCCCGGGGTGGTGCCGTCCGCGCCG 45055 35 100.0 37 ................................... GGTGCCTTGGGGTAGGCGGCAGCGAACCGGTCTTGAT 45127 35 100.0 36 ................................... GGCGGCGGCTCTTTCCCCGCGCCGAAAAGCGTCCTC 45198 35 100.0 38 ................................... CGTCCACAGCGACGGCAACCGTGACTTCAGCCACGGGA 45271 35 100.0 35 ................................... CACAGATGGGGACCGCACGGGCACCTTCCACATCT 45341 35 85.7 36 TCCTG.............................. CAACCTGCCGTCCGCCTACCGCATCGACTACACCAT 45412 35 97.1 37 ...........T....................... CGCCGAGATGCTCGCCCAGACCGTCACCAACACCGCG 45484 35 100.0 37 ................................... CATTTTGATGACGCCCGGGGTGATGCCGTGGTGGGTT 45556 35 100.0 37 ................................... AAGGCCCAGCTGGATGCGACGAAACCATCCGTAGCCC 45628 35 94.3 0 ...................G.............G. | ========== ====== ====== ====== =================================== ====================================== ================== 16 35 98.6 37 CTGATTCCGGTCATTTTGGCCGGACACCATTGAAG # Left flank : TTGTTGGGGAACTTCCCGAGTACGTCCCAATGGTAACGAGATGACGCGGCGCCGTTACTTGATGGCTTATGACGTCGGCGACCCCAAACGACTGCGACGTGTGTGCAGCCTGATGGAAGATCATGGTGAGCGCCTGCAATATTCGGTGTTTCTGTGTGATCTGACCATCGCCGAGCTTGCGGAACTCGAAGCAGCGGTCGCTGCAGTTATGGACCTCGTTGAGGACAGCGTCGTTCGGATTGACCTGGGCCCTACGTCTTCAGCTGCCACTGTTAGCCAGATCGGTCGTCGCCGGCGCGTACCGCAGGAAGGACCGCAGATTGTATGAAACCGCGAGCGCTCCGGTGACGGGCCAGGTCCAGGACAGCGCTCGCGCCCAGGTAGCGCACGCAGGGATAGACGGTCAGCGTTGTTTCCACTGGGCCAGCAGATGGCTGACATGCTCACCGCTCGCCGGAGGAGGTATCGTAGCAGGTTATTGGGCTCCGATTCATCGAGCC # Right flank : GCAACTGGGTACCGGTTGCAGGACGACGCTACGCTACGGCGGATCGCCGCCCGGGTCCGCGCCGCCGTCGGGTGACACCGGAAGCAGTAGCCGTGAGAAGCCGAAATGTACGGAATGGGTGGCCGGTTTCATGCGCACCCCCGTCACCAGCGGCTCGCCCGTCCCCAGGTTGCGGGCGTACCGGGGATGACAGCCGCCGGCGATCAGAACGCGGATGCGGGATCCGGCGCGGAAGCGGTGCGCGATGGGGTCGAGTTCGATGGTGAGGGTGCCCACCGGGCGGGACAGCCGCCGGTAGCCCTCGCTGATATTCACCGATCGGCCCCGCGCGCCAACTTCGCTCACCCGGACGAACACGTCGACATGGGGATTGTCGGCGGTGTGCGCCAGCTCGGCGACGGGGTTGCCGGCCACGCACAGATCGGCGGTGAGCACGTCGCCGGTGAAGCTGAGCACGTCGTTGCGCCGGGCCAGCCGAGTGTCGTCGCGGTAACCGCCCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGATTCCGGTCATTTTGGCCGGACACCATTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2032694-2033181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLNH010000001.1 Mycobacterium sp. SM1 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2032694 36 100.0 36 .................................... TTGGCCGAGCTCCTGGATGCGCGGGACAATTTGCGG 2032766 36 100.0 39 .................................... CGGAACATTGGCCTTCAATTTTGCCTCCCGTCACGTCAC 2032841 36 100.0 43 .................................... GAGCGTGGGGCGGTCGTGGTTTTGGAGCGTCGCGCGGCTTCGG 2032920 36 100.0 42 .................................... AATCTCGATGATGTGCTCGGTCATGTCACTTCCTTTCCTCAG 2032998 36 100.0 34 .................................... TCGAGGGACGTGATTTTTAGGTCGTCATATCCGT 2033068 36 97.2 39 ..G................................. CCCCTCACAAGCCCAAGCCGTCACCAACCTAGCCACAGA 2033143 36 86.1 0 ...........................C...T.TCT | TC,G [2033169,2033174] ========== ====== ====== ====== ==================================== =========================================== ================== 7 36 97.6 39 GTCGGCAAACCATTCACCCCGAGAGGGGACGGAAAC # Left flank : ATACGCCCTCGACCTTCAATTGCAGAGCCTGGTCCGGGCAATCGAGGCGCGATCGCCGTCGCTGTTCGCCGACATCGAAATTAGCGCGGGCAGCGCACGGTAAGTCGATGGCGCTGGCGAGCCGGGAAGAATATTTCAACCTCCCCCTGCATGTCGACGAGGCCGGAGGTGTGGTCGGAAAGACGTTCGTACTTGTCATCTACGATATTGTCGACGACAAGCGGCGAACCTGTCTGGCGAAAATTTTGTCCGGCTTCGGGTACCGTGTTCAGCGATCGGCATTCGAAGCGATGCTGACGAAAGCTCAGCTTGTGAGGCTTGTGAAGAAAATCGACCGGTTCAGCAAGGAGGGAGATAACATCCGAATCTACAAGATCAGAGGCGACGCCGCGGTGACGTTCTATGGGGAGGGTCAGCTCGTGAGCGCGCAGGATTACGACTTCATATGACCGACCTCAGGCTTGTCTCTCTTACCACATGTGAGGCGGTTTGGCAATAGA # Right flank : TGCGGTGGGAGCGCCCACCGGGCCTGGCGGCACCGCAGTGTTTCGTAGTACTGCGGGGCCCGACCGCCGGCGCACCGGTCAGCGAGGCAGGGCTGCGCAGCCTATTTCGCCGCCACCGGGAGCTCTCCGGCGCGACCCGGGTGCGTCCGCATCGGCTGCGCCACACCTACGGCACCGAATTGGCTTCCGGGGGAATTGATCTGCTCGCATTGCGGGCGTTGATGGGGCATGTCTCGCCGGAGACCACGGCCCGCTACGTGCACCTGTCGGTGGAACAACTCGCCGCCGAATATTGCGCCGCGCGCGCGAGTCTGGCTGGAGCACTGCGATGACCGCGCCGGCAGTCGACCGGGGTGTCGACACCGATGCACTGCTGGGCGGCTACTTCGATTACGTCGCGGGCCTGGGCCTCGGTGAGCGGGCGGTGCGCGACCGCATTCGCATCGCGCGCGACTTCCTCTCCCGCCACCGGAATCTTGCCGCGTGGATGACTCTGCCCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCAAACCATTCACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //