Array 1 41371-43919 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABWJ01000004.1 Lacticaseibacillus rhamnosus HN001 contig00107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 41371 36 100.0 30 .................................... TGCGACTAACACCTGCGATCAAAGCGAAAC 41437 36 100.0 30 .................................... TGCCAGTTGCTGGAGGAGATCACAACGACT 41503 36 100.0 31 .................................... TGAAGACAAGGTTGCGCCCTGTACACTGTTA 41570 36 100.0 30 .................................... GCATTCAGCGTTGGGACAATCCTTCCAGAA 41636 36 100.0 30 .................................... TAATTCGCAGCTAAAACGTGTCACCGAGCA 41702 36 100.0 30 .................................... TAATGTGCCGGTGGGAGCAATGGTGTTATC 41768 36 100.0 30 .................................... AGTAAGGTAGCCAAATACAACCATAAGGGT 41834 36 100.0 30 .................................... AACTATCTAACACGCTATACACAGAATGGC 41900 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 41966 36 100.0 30 .................................... TGATTTGCGAGATGTCGCGATAAGAAGTCA 42032 36 100.0 30 .................................... GACAACAGACTCCGTCAACATCAGTCTTAA 42098 36 100.0 30 .................................... ATAAACATCGTATGCGAATCGTAACAACGT 42164 36 100.0 30 .................................... AGTTGATTGAGGCGCGGATGTACATTCCTG 42230 36 100.0 30 .................................... CGGCACGCTATTCCATCCGATTAGCTACTT 42296 36 100.0 30 .................................... CCGTTTTGGTTGCAAAACGAACCGATTACG 42362 36 100.0 30 .................................... AAGGTGTACTGCTTAGCTGACTCCCACGTG 42428 36 100.0 30 .................................... GAAAGTTCTTTAAGTTGACCACTCATTTCA 42494 36 100.0 32 .................................... TCAGGGTGCCGGCTACATATACACGACTTTCG 42562 36 100.0 30 .................................... TCTGGAAGCCCGCAATAGTCAATTGAAGCT 42628 36 100.0 30 .................................... AAATGGTTTGAATACCCTTATCCCGCCATT 42694 36 100.0 30 .................................... TAATGACGCTTAACGCTCTCCGGTTGGTCT 42760 36 100.0 30 .................................... AGTCGTGCAAATCCACGTGCGCGCGTTGCA 42826 36 100.0 30 .................................... TTTTATGATGGGCTTGTATTTTCCCAAATA 42892 36 100.0 30 .................................... GGCAATTTTAAAGCCGTGACCGATGCCACG 42958 36 100.0 30 .................................... AATAGCAACCGAAAGCGCTCCAGTGTCGCC 43024 36 100.0 30 .................................... GTAGTGCATACCATCATCACGAGTGCCGTT 43090 36 100.0 30 .................................... TGAACACGATGACGTAAAAGAAATGTATGT 43156 36 100.0 30 .................................... GAATGTTTTACCATCGGAACGCGTGGTAAT 43222 36 100.0 30 .................................... AATAGCCAAGTAAATACCGGCACGATTTAC 43288 36 100.0 30 .................................... CAACATCAACAACAGCCGGCAATTGCTGCC 43354 36 100.0 30 .................................... ATGACGCAGTTGGCGAAACCTTTGCACGTT 43420 36 100.0 30 .................................... TCGCTGACATTGACCATCAACGGCGCCGAG 43486 36 100.0 30 .................................... GCGTGTTAGTCGCTTGTGTGGCTTACCGTT 43552 36 100.0 30 .................................... GCGGCATCTTCAAAATCAAAACGACGCGCA 43618 36 100.0 30 .................................... CAATATTTTGCCCCTTGTTCCGTTGCGCCA 43684 36 100.0 30 .................................... GTTGACGCGTTGCGCTGTCGCTGGCCGTTG 43750 36 100.0 30 .................................... TGATGACGAAGTGAGTTTGCCCACCGCTTG 43816 36 100.0 30 .................................... ACTCGGGTATTGACAAAGATCGACGCGGCA 43882 36 86.1 0 .......................AA.C....T...G | C,G [43908,43914] ========== ====== ====== ====== ==================================== ================================ ================== 39 36 99.6 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAAAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAGGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATGTTGAAAGTCTGAGCAAGCTGTTAGATCAGGTTAAGAACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGCAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAGAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGGCTGTGTGAAAACACCG # Right flank : GACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGTATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCTCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTTTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //