Array 1 170751-168853 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBA01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain 2012K-1623 NODE_2_length_412595_cov_35.0842, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 170750 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 170689 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 170628 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 170567 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 170505 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 170444 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 170383 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 170322 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 170261 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 170200 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 170139 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 170078 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 170017 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 169956 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 169895 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 169834 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 169773 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 169712 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 169651 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 169590 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 169532 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 169471 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 169410 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 169349 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 169288 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 169227 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 169166 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 169105 29 100.0 11 ............................. CGGCCAGCCAT Deletion [169066] 169065 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 169004 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 168943 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 168882 29 93.1 0 A...........T................ | A [168855] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 188649-187033 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBA01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain 2012K-1623 NODE_2_length_412595_cov_35.0842, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 188648 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 188586 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 188525 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 188464 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 188403 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 188342 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 188281 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 188220 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 188159 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 188098 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 188037 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 187976 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 187915 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 187854 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 187793 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 187732 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 187671 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 187610 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 187548 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 187487 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 187426 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 187365 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 187304 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 187243 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 187182 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 187121 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 187060 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //