Array 1 54436-53674 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMQ01000028.1 Siminovitchia fortis strain DE0032 NODE_28_length_54505_cov_30.183012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 54435 36 86.1 30 CCAGG............................... ATGCTAGTTTTTCGTTCATCTCTTATCATC 54369 36 100.0 30 .................................... TATACTCATTTACAAATTCAATACCCATAC 54303 36 100.0 30 .................................... GTCAGTTCGTTTGTATTCGTAATATTAATC 54237 36 100.0 30 .................................... CTAAGACGAGCGCTAACGTTAAATCTCCGA 54171 36 100.0 30 .................................... CTAAGACGAGCGCTAACGTTAAATCTCCGA 54105 36 100.0 30 .................................... ACGTAATTATCAATTTCCCGGAACGTCTGG 54039 36 100.0 30 .................................... TAGAGCTTGGGTTTTACCGCATGATGAAGT 53973 36 100.0 30 .................................... GGCATGAAGATATTCTCGTATTCTACAAAA 53907 36 100.0 30 .................................... TTGGTTGTTTGATTTTAATTCGTTAATAAT 53841 36 100.0 30 .................................... CTTTCCCCGTCCATGTTTTCTTCGGTTTTC 53775 36 100.0 30 .................................... GACTGAATCACATCCCCCAGAGGCATTCCA 53709 36 86.1 0 ..T..........C..G......A......A..... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 97.7 30 ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Left flank : TTCCTAAACCTAATTATACCAAAGGCTGGAGCCCTTTTTGTATTTAATAACTAGATTTTACTTTCGTAA # Right flank : GATAACTGTCAATTGGAGTTTCATCTCTTTTTTCTTGGAGGTAAGCTTGCCCCTTCAGTAACTGCTAAAACTGTCAAAAAAACCGTTCCGCCAGCGCACATTTTAATGATAAAATGGAACTAAATACTGGACCATGAGAAAGGGATAATATGGAAAAAGGATTAAAGTACAGCTCTACCATCAAGTCACGACCCTTCTTATACAAGGAGACCAAAATGCTGGCAGAACTGCATTTGAAGGGGTTGAATGAACTCGAATTGAAAGAGAAAGTTATCAGCCAAAATATCTTTCAAGTCAAAACTGAAACCCGCAAAAGAGAAATTGCTTCAGCCATAAAGGCACGTTTAAAAGTGCTGGATGATTACCTCATTAGGAAGCTTTTAACTACTGACATACATACAAGTAAATTGATCGTACTGTACGCTATCCTTAAAACGGACAGGCTGTTTTATGAATTTATGTATGAGGTTTTCAGTGAGAAAATTTCCGGGCGCGATTTG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 116-3317 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMQ01000064.1 Siminovitchia fortis strain DE0032 NODE_64_length_18369_cov_29.486934, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 116 36 100.0 30 .................................... CTGCCGACAATGCTACGGATACCTGCGATA 182 36 100.0 30 .................................... CGGCTTCATGCCCGTTTGCTCGTAATAGGA 248 36 100.0 30 .................................... GGAGGCCCTTTACAATGAAAAAACTACTCT 314 36 100.0 30 .................................... TAGGGAACTTGAGCAATACGAGGCGGAACT 380 36 100.0 30 .................................... ACGATTTCTTTATCGGATTCCCACGGCGGA 446 36 100.0 30 .................................... CATTAATCTTTGCTTTTCTTCCGGTGTTTT 512 36 100.0 30 .................................... AATGCTAGTTATGTAACAACAGGTTTGTTA 578 36 100.0 30 .................................... TTAGGCGGGAAGTTAGCGAGGTCATTAGAG 644 36 100.0 30 .................................... GATAGCCTTTCTCATATTCGTGTTTTTCTG 710 36 100.0 30 .................................... CGTAACAAAACACGCTTCTGTTACATTCGA 776 36 100.0 30 .................................... AGCCGAAAGCCGAATAAGGCTTTTTTATTT 842 36 100.0 30 .................................... TGTAATGAGGCCGATCAGGCATCACTTCCT 908 36 100.0 29 .................................... TAAAGGTTCGAGGAAACATACTCGCCAAT 973 36 100.0 30 .................................... CGGTTTTCAAACGGTACACCGGTGTACCAA 1039 36 100.0 30 .................................... CCTCTTGCGAATGTTCATCGGTCCAGTCCT 1105 36 100.0 30 .................................... GCAATTATGCTTAACACGGTTAAATTGCGC 1171 36 100.0 30 .................................... AAAAAATCCTTCGCAAGATGCTAGAGCTTT 1237 36 100.0 30 .................................... GGAAAGAGGATCAGAAGGACAAAAACTGTC 1303 36 100.0 30 .................................... TACTTTAATCGACCAAATCGCGCAGGTAAT 1369 36 100.0 30 .................................... CTTTCGTGGGGTTACAATCTCGCAGAATTA 1435 36 100.0 30 .................................... CGAAGCTAAGACGGTTAGGTGCGCTCATGT 1501 36 100.0 30 .................................... TGGCACGATGTCACATATCACACGATAGAA 1567 36 100.0 30 .................................... ATCATGTTGTATCGTTCTCCATCCGAAACC 1633 36 100.0 30 .................................... GTATAACTCGTTAACTCTTTCGTTGCAATA 1699 36 100.0 30 .................................... AATCAGTCGGAACAAACATCGTAAAAGATG 1765 36 100.0 30 .................................... CTCCTTTAGTTCCTGGAGCATAAAGGTAGG 1831 36 100.0 30 .................................... GCGCGCTTTAAAGAATACCGCCCCGACTAA 1897 36 100.0 30 .................................... CCTCCTTCGGGAAATAGTCCCTTCACCCCT 1963 36 100.0 30 .................................... TAATACGAAGGTGGAAGCGAAAGGATTAGG 2029 36 100.0 30 .................................... ATGCTGGATGAATTCGTGATCACGAAAAAC 2095 36 100.0 30 .................................... AATGTAAAAGGCATCTATTTAACGACTGGG 2161 36 100.0 30 .................................... CCGCTTTTGACACGTGTCGTCCAACCATAA 2227 36 100.0 30 .................................... GGATATTCGATGAAATCCATGAGTACAAGG 2293 36 100.0 30 .................................... TGCGGATTGGCTGAATGGTCTATCATGGAT 2359 36 100.0 30 .................................... AGGCGGATTGGAATATTCCTATTATCGAGT 2425 36 100.0 30 .................................... AATTGCAGGTGGGAAAGCTGGATTGACAGC 2491 36 100.0 30 .................................... ACAAGGGACAGGGAATGGTTTTATGAGGTG 2557 36 100.0 30 .................................... CCAATCCCACAAGGTGCGCCTGCCCTCGTT 2623 36 100.0 30 .................................... TGCAAGATAATCCATATCATAATTTTTTGC 2689 36 100.0 30 .................................... GAAAAAGAAAGTGGATCCACGTGAAGCTGG 2755 36 100.0 30 .................................... GGAACTTTCGGATTGAAGGTAAACCAGCGG 2821 36 100.0 30 .................................... GAAAATAGAATATGGGTATAAACTTTTTAC 2887 36 100.0 30 .................................... CATTCATATCAATAATGATCTCAATGAAAC 2953 36 100.0 30 .................................... AAGAAGAGAAAGAGATTGTCCTACCCAGTG 3019 36 100.0 30 .................................... TTGAGAGCATCCAGGGAGATGATCTTGAAA 3085 36 100.0 30 .................................... TCCAGCAGTGGTATTAAAACAGCGTGGACA 3151 36 100.0 30 .................................... AGAGGATCCGAAGTTCCTATTAGGAAACTG 3217 36 100.0 29 .................................... TTGGTTGCAACGATGTAAACAAAAAGAGG 3282 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 49 36 100.0 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : AACCGGCACACTATTTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAGTGATATGATTAATGCATCCACAATTGCGCTTGGTGATTAG # Right flank : TACATGGCCGCAAAACCCTTGATTCCTCCCCGTTTCAGGGGTTTTGTATTTCCAAAAAAGAAGGATTTATCCCTGGGATTTATCCGCTTTGTTTTATTTTTTATAGAAATAACTGTAAAAAAAATACCTGCAAAATAAATTGCAAGTACTCTTTAAAAGAAATCTACTTTTTTAACACCGAGTTCTTCTTCTGCTGTCGTTGTACCCAATAAAATCTCCATATTGGCAAATTGTTTCTCCGTTATTTTCATTGCTCGGATGGCCCCATTAACAGGGGGGAGATTCTCCTGCAATCTCTTCATATGTTTACGGACCGCATCCTCCCCATTGCAAATTCTTGTGTATACTGAATATTGAAGCATTGTATATCCGTCATTCAATAAAAACTTACGGAAACGAGAGTAGGCTTTTCTTTCCTTCGGAAGTACTACCGGCAAATCAAAGAAAACGATAATCCTCATGTATCTACTCATATGTATGTACGTTTAAATTGGTTAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 109-1477 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMQ01000066.1 Siminovitchia fortis strain DE0032 NODE_66_length_14605_cov_31.985820, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 109 32 100.0 34 ................................ CGACAGCTTCCGTAACGATTACCGTGTTTTTGAG 175 32 100.0 33 ................................ TCGACTTGGAGGCGGCGGCTGGCTTCGAATCAA 240 32 100.0 34 ................................ ACCTGTGACGGTGTTACGCAAGACTTCGATTTGC 306 32 100.0 36 ................................ TTCCTTCGTTTCTTCCGTTTTTAACGACTCGTCAGT 374 32 100.0 33 ................................ TACTCGAGCTACTAACGCATTCCACTGTGCTTC 439 32 100.0 35 ................................ TGCTTGCCGTAGCCTATTCCGTATTTCGACTGCGT 506 32 100.0 35 ................................ GTCTCGCAAAAGATATATCCGGAAACAAATATGGC 573 32 100.0 36 ................................ GCTCTACCTATCGACGACCCGAAGAACGCGCATTGT 641 32 100.0 35 ................................ CGTCTCATACACATAGTGTCAGCATCCCGTCGCAC 708 32 100.0 35 ................................ TCCGGAAATGCTAACGTATATTCGGACGAGCACCT 775 32 100.0 34 ................................ CCTCCAGTTCAATGTATTTGATTATGGTCATGCT 841 32 100.0 34 ................................ AGAAAAATCCCGTTGACCGTATCTTTCGATTGCG 907 32 100.0 35 ................................ CAGTTCTTCGGCTCCCACTTCATCGAGAATAACCC 974 32 100.0 35 ................................ ATGATAATTACATCTTGGCTGGCGGCTCAATAGCA 1041 32 100.0 35 ................................ CCAATGGCGGCGGATGAGGTGATCATGGGAATCGG 1108 32 100.0 36 ................................ TTCAATCGACAGGTGCATGTCTTTCCACAGTTTCAT 1176 32 100.0 35 ................................ ACGGAAATCCTGCTTTGCTTTTTCACTCAAATCCC 1243 32 100.0 38 ................................ CAGAATATGAAAAGGCTACTAGAAAAATTTGGGTAATC 1313 32 93.8 35 ..........A......A.............. ATCTGAACGTAGTGGGATATAAAGGCGTGTTTGAC 1380 32 87.5 34 ..........C.A......T.......A.... GGTGTAAAGCCGGAGGTCATCGACGGTGCTTTTT 1446 32 75.0 0 .A....................TA...TTTTA | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 97.9 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : CAAACCGGCACACTATTTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAACAGTCGGTCCGTACACAAAGTTTCCTAGCCG # Right flank : AATCAGTTTTTTTCTAAAATGAATCTTTTCCTCCCCTCACCCAGTATATATGTTTAGAATAATTTTTAAGGGGTGGCTGTAATGGGTATTTTATCAAGGTTTAAAGATATTATGTCGAGCAATATCAATGCATTATTGGACAAGGCGGAGAATCCGGAGAAAATGATCGATCAGTATATGAGAAACCTGAACAGTGATTTGGGCAAGGTGAAAGCTGAAACTGCTTCGGTTATGGCGGAGGAACAGCGGTCAAAACGGGCGCTCAATGAATGTTCGACAGAGATTGAAAAGATGCAGAATTACGCGGTCAAAGCCTTGGAAGCAGGAAATGATGATGATGCACGGAAGTTTTTAGAGAAGAAGGCCTCCCTGGCCGAAAAAGAAGCGGAATTGCAGCAGGCCTATAGTTTGGCAGCTTCCAATGCGGTCCGGATGAGGGAGATGCATGACAAGCTTGTTTCTGATATCGGCGAGCTGGAGGCACGCAGAACGATGATCAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2589-88 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMQ01000076.1 Siminovitchia fortis strain DE0032 NODE_76_length_8755_cov_32.961742, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 2588 32 100.0 33 ................................ TTTTAATATTTCAACCTTAGTTTCAGTATCCCC 2523 32 100.0 35 ................................ ATTTCATAGAAACTCATACCCGTTGAAGTTATACC 2456 32 100.0 35 ................................ ATGTTAGCGACTTCAGACAACCTACAACCGGTTGA 2389 32 100.0 35 ................................ ACCATCTTGATCACCTCCTCCTGTGTGCAGGAATC 2322 32 100.0 35 ................................ TTGTCTACACCGAGTTTGCCTAGCACCCAGTTAAC 2255 32 100.0 35 ................................ TCAAACTCCTGCTCCATGCCTTCCAGGTCCTTGAT 2188 32 100.0 36 ................................ ACCTTTGAACTCGTTACCTTTTCTTGAACCCTGACC 2120 32 100.0 39 ................................ TTTCTCAAGGACGATCCAATAGGCGCATCCATAATGCCA 2049 32 100.0 36 ................................ ATTAGCAATATATTTTGGCATGATTTTGCCCTCCTT 1981 32 100.0 35 ................................ TACTACTGTCATAACCGCGCCGAACCCCGAAATAA 1914 32 100.0 36 ................................ CTCGTCAGTAAAACGTATTGCGAATACAACTTTATC 1846 32 100.0 34 ................................ ACAAAAATTCACGCAGATCTTATGGAGTACAGCC 1780 32 100.0 34 ................................ AAAATATTGACGAGATGCTTACTTCGAACGGACT 1714 32 100.0 35 ................................ ACCGACACGCTCGCGAAAATTTGGCAGACGGTACG 1647 32 100.0 34 ................................ CTCGCCGAGTGGTCGGTGCCGAAAGTAACCTATC 1581 32 100.0 34 ................................ TTCTAATTCGATAGTAGAGCCGATGGGGTTACGA 1515 32 100.0 35 ................................ AACTCGGCAATCGGGAAGGCAATAAGCCTCCGCAG 1448 32 100.0 34 ................................ TTCGTAATCCCCGTCGTGGAATTTATCGATTGCT 1382 32 100.0 33 ................................ CGTTACATATCGGCGCGAGCTTTCATTCCAAGC 1317 32 100.0 35 ................................ TATCCTTGAAATCTACGAGCCCTACAGAAATATGT 1250 32 100.0 34 ................................ CAAGAAGACGGTGATCCTGTACTTAAGTTTTTAC 1184 32 100.0 34 ................................ ATACTTGAGTTTTCATTGATGGACTTAAGGTAGT 1118 32 100.0 36 ................................ TATACGAGATTGGGCGTGATTTTCGAGAGTGGTTAG 1050 32 100.0 35 ................................ AAGGATGAAATCTACAACTAGAAAGGGGTAAAAGC 983 32 100.0 36 ................................ CTGGTGTAGTGTAATTTCGAAAAACAGCCCTACCAT 915 32 100.0 35 ................................ TTTGATTTTCTTGTTGTCATCTTGCAGTTGCTGAA 848 32 100.0 34 ................................ TCTGACGTAGAGCCCCACCGTCATAAGCCAAACC 782 32 100.0 36 ................................ CAAACGTTACTATTTCGTCGCCCCACAACACGTCCT 714 32 100.0 34 ................................ CTTCCGGCTCATATTCGTAAACCGCTCCGATAAG 648 32 100.0 33 ................................ GCTAATCCTTCGCCAGTCCAGCGTCCGATTTGA 583 32 100.0 34 ................................ GTTAGAACACTCAATCTATTCAGCCCTTTTAATT 517 32 100.0 34 ................................ AACCATCATTATTTGGTTAAAGAACTCACTCCCG 451 32 100.0 34 ................................ TTCGGAAAACTGGAACAACGCCAGTCCGTCGGTT 385 32 100.0 35 ................................ AATTTCGATGCGTCGAGGCTTTCAAACGGAATCAT 318 32 100.0 35 ................................ CTTTTCGACATCTACCAAAGAGTCCTCAACTTCGA 251 32 100.0 34 ................................ ATAGCGCCGTGTATTGCGTGTGACTTCGCGCTTG 185 32 100.0 34 ................................ ACGTACCGATAATTTAAGTCCTCTGTTAGCTTTT 119 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 38 32 100.0 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : TGAATATCCACCATTTTTTTGGAAGTAGGTGAAAGAGTGCTTGTGTTAATAACATATGACGTCAGTACCACTACTCCGGAAGGTAGAAAAAGACTTAGGAAAGTCTCCAAGAAGTGTTTAGATTATGGACAAAGGGTTCAGAATTCCGTATTTGAATGTGTTTTGGATTCTACGCAACTTAAACAATTGAAATATCAATTAGAGGAAATTATTGATAAAGAAACCGATAGCTTAAGATTTTATAACTTGGGGAAAAACTATAAAGGCAAGGTAGATCATATAGGAGCGAAGGAATCTTACGATATAGAAGGAACACTTATTATTTAATTATGGTGCGAATATACAGCTCTCATACTTTTTCGTGGGGATTCGCACCCGAAATATCTTGGATTTGATAACGAATTTCCAGATAACTTCAAATGTATTCCTTTTTATGGGAATAAATAGCGAGTTTATGTGATTATTACCCTTTTTTTGGATAAAAACTCACTGATTTCGCT # Right flank : TTCGACAGTCGTGTAAAGAATCACTTTGTTCCGTCAAAAACAGGCCTTCTTTATTCAAATTCCTTCAGCGTGATTTCTGTACTTCCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 118-945 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMQ01000126.1 Siminovitchia fortis strain DE0032 NODE_126_length_1019_cov_30.541401, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 118 36 100.0 30 .................................... AGCACGTTACAACAGACTTCAAAAAGTTTT 184 36 100.0 30 .................................... CTGCTATTTCATCATCGGTAACGCGCTTTT 250 36 100.0 30 .................................... AGTCATTAGTACGCAAATATACGGTAAAAG 316 36 100.0 30 .................................... CGGATTCGCTTCTCCTACGATGTTCTTAGA 382 36 100.0 30 .................................... CTTTCACCTTCCAAACCTACATTAGTAGAC 448 36 100.0 30 .................................... CAGCGGTTAAACTGCCCCTTTATAAATGCT 514 36 100.0 30 .................................... TGCAGGTTTTTAGCGGCCTTTTCACTGGCG 580 36 100.0 30 .................................... CATCTTGCCCCAGAACATCAGTTGCACATA 646 36 100.0 30 .................................... GCGACTTGAATCCGGTCGTTACGGTAGACC 712 36 100.0 30 .................................... GTGATTACCTCGTTGGATAAGCGCATTATA 778 36 100.0 30 .................................... TGATACTGTGTTAGGTGAGGTGGCTGTCGT 844 36 100.0 30 .................................... ACTGACTTTGTTGGGGTAGTTAATAAGACT 910 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : AGGGAAGTACAGAAATCACGCTGAAGGAATTTGAATAAAGAAGGCCCTTTTTTGACGGAACAAAGTGATTCTTTACAGTGATATGATAACGAAGGTAACATTTCAACAGTGACGCAAG # Right flank : AAAGAATCACTTTGTTCCGTCAAAAATAGGCCTTCTTTATTCAAATTCCTCCGGCGTGATTTCTGTACTTCCCT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 118-616 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMQ01000139.1 Siminovitchia fortis strain DE0032 NODE_139_length_689_cov_26.236928, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 118 36 100.0 30 .................................... GAAAAGTTATATGAGGAATTTAAAAAAGAG 184 36 100.0 30 .................................... CATGCTTTGCGGGATTGATGCGGCAACGCT 250 36 100.0 30 .................................... TCTGCAAAGTCTTGGACAGCCGCCTGCAGC 316 36 100.0 31 .................................... CCAACGCGGACAAGCGCCTTTTTAAGTTCAG 383 36 100.0 30 .................................... GGGCACTCCTGCTATCTCCTACTCTCATTA 449 36 100.0 30 .................................... TCGGGGATCCGGATGCTCTTTTAAAATATG 515 36 100.0 30 .................................... GTTTAAAGGGAAGATAGTTACATCTGTCCC 581 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 99.3 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : TTTAGTACCCAGATTTGTAAATTGTTCCCAAAAGAGCGCTGAATTAGTTTTCGGCAAATTTACTTTCGTAATTTGGGGTGATATGATAATGCTCACGAGTAGAACCTTTTTCTCCACG # Right flank : AAACTAGCACATTATTTCAGACACCTAATTTCAAATTAACTCCGGTGAAAAACCTGAAATAGTGTGCCGGTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //