Array 1 97456-95792 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABEL01000005.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SL486 gcontig_1105963528966, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 97455 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 97394 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 97333 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 97272 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 97205 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 97144 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 97083 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 97022 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 96961 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 96900 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 96839 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 96778 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 96717 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 96656 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 96595 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 96534 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 96473 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 96412 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 96351 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 96248 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 96187 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 96126 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 96065 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 96004 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 95943 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 95882 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 95821 29 96.6 0 A............................ | A [95794] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114840-113714 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABEL01000005.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SL486 gcontig_1105963528966, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114839 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 114778 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 114717 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 114656 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 114595 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 114534 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 114473 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 114412 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 114351 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 114290 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 114229 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 114168 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 114107 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 114046 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 113985 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 113924 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 113863 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 113802 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 113741 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //