Array 1 56880-58942 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN151107.1 Pectobacterium parmentieri strain RNS 08-42-1A scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 56880 28 100.0 33 ............................ CGCAGGAAGAATCTTTTATAACATAAACAGAAT 56941 28 100.0 32 ............................ TTAACTTCATCGAGCACGCCCAGCAGTTTAGC 57001 28 100.0 32 ............................ CTAAGCACGGCTATTAATTGCCTTATTCCAAT 57061 28 100.0 32 ............................ TCTGAAACGCTAAACGGCGTAACGTGCACTAA 57121 28 100.0 32 ............................ TTAGCGACTGCAACGCTAATTAATAATAGGAT 57181 28 100.0 32 ............................ GTTAACAGTAAATTCACCGTCACGGTAATAGT 57241 28 100.0 32 ............................ TTCCACGTGACCCAATATAGAACTATCAGAGT 57301 28 100.0 32 ............................ TATGCTAACGGCGCTCGTACTCTCTTGGATTT 57361 28 100.0 32 ............................ AGTGCTGGATGACGTCACGCTCGACGTTATTC 57421 28 100.0 32 ............................ GTATATGATGACCATAAAGGCGTGTTAGAAGT 57481 28 100.0 32 ............................ ACGGGTCGTATGCAAATTCGTTAAGTGAGTCG 57541 28 100.0 32 ............................ GACATGCAAACCCGTCAGCGTGAAGTTGCTGC 57601 28 100.0 32 ............................ ACCGTTTCCCAGGCTGTTATGCAGTTAATTAA 57661 28 100.0 32 ............................ ATAACGGCATGTGCCAGATCAACGGCATCTGA 57721 28 100.0 32 ............................ TTGGGCAATGGGCAGTGCGCCCGTTGCTCGTC 57781 28 100.0 25 ............................ TAGCGCCCCGCTGCCTGCACTAAAG Deletion [57834] 57834 28 100.0 32 ............................ GCTCATCACTGCGCCGTGTGCGTGTTTATCAA 57894 28 100.0 32 ............................ ATCACCCTCTACCGCCGCCGCGACACGCACCA 57954 28 100.0 32 ............................ GTTTATCTCGACGGGCATTGTATCCTTTGTAT 58014 28 100.0 32 ............................ TCTTACGCGTGAGGCATACATTGATATCCTAT 58074 28 100.0 32 ............................ ACAGTCTAGTACTGACCTCTCCGGTTGAAATG 58134 28 100.0 32 ............................ CTCTTTCGACCACACTGAATACGCCAGCGATG 58194 28 100.0 32 ............................ GGCTGCGTTCTCCGATACCAGATGACCTGAAT 58254 28 100.0 32 ............................ AAGGTGCGAAAGCCACAGCGTCATGAAACCAA 58314 28 100.0 32 ............................ TTTTGAGGCCAATCACATTCTGAAGCTTAAAT 58374 28 100.0 32 ............................ AGCGCAGAACCACCCACGCTAACCCGCGAATC 58434 28 100.0 32 ............................ ATAAATTACGCCGGTTTGAGTCCTGACAAAAA 58494 28 100.0 32 ............................ ACGGATGACCGAGTGACCGGCGACGAATACCA 58554 28 100.0 32 ............................ GAGAGCGGAACGATGTGATCCACCGCCCTGTC 58614 28 100.0 32 ............................ AGTCGGCTCAATTGGCACCAGCGCCCAACCTT 58674 28 100.0 32 ............................ TTGCCTACATACCATAAATTACGTCTAGCTGA 58734 28 100.0 32 ............................ CGGTAAGCAGATAAAAATTTATGGCGGAAAGG 58794 28 100.0 32 ............................ GCAATGCGTGGGGCGGCATGGTATTGAAAGAA 58854 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 58914 28 85.7 0 A...........GC..........A... | G [58939] ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCGCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTTCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 76158-77751 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN151107.1 Pectobacterium parmentieri strain RNS 08-42-1A scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76158 28 100.0 32 ............................ AGCTAAACGCGGCGGTGTACTCCGCTATCGAA 76218 28 100.0 32 ............................ CTGTATAAACATACATACCCCTAAAAGCTCCT 76278 28 100.0 33 ............................ CACTGCAAATTATCCGCTTTCAGGTTTCGCAGG 76339 28 100.0 32 ............................ GCGTTTAGCTGGTGGAACAATTTAGCGTTAGC 76399 28 100.0 32 ............................ TCATTCAACGTGCTTGACTATGCCCTGCGTGT 76459 28 100.0 33 ............................ TAGAGGAAGATTCTAGCCTTTTAGATATCTTGG 76520 28 100.0 32 ............................ AGCAGAAAGCAGGGCAAGCGGCAGAAACTCGT 76580 28 100.0 32 ............................ TTCATACGCATCATTGAAGCTGTGCAGGGCAA 76640 28 100.0 33 ............................ TAGATAATAGGGGCTTATTCTTTGTTGAGGTTA 76701 28 100.0 32 ............................ TAAAGTCGGGCAATCTGTTTACGTGCCTTTCG 76761 28 100.0 32 ............................ ATAGCAAAATCTAACGCCCGCGCATCCATAAA 76821 28 100.0 33 ............................ CTACAGTAGTATCACTGTAGCAACCATCGCCCC 76882 28 100.0 32 ............................ ATGATGACGAGGCAATTTTTCTTGCGCAGCTC 76942 28 100.0 32 ............................ TGGGTAATGGTCGCTGTCACGGTCGCCTCCGT 77002 28 100.0 32 ............................ CACAATTCCAATTCATCCATGATGTGCATGAT 77062 28 100.0 33 ............................ TCATTATATAATCACTATCCGTGAATTTCATGT 77123 28 100.0 32 ............................ ATGTAAGCGCTAACAATGTTATGGTGCGCTAT 77183 28 100.0 32 ............................ GTTATCAATATTTATTCCGATGGCGCATTCAC 77243 28 96.4 33 .............T.............. CGCCGCCCGATACTGACGTTGCGCCGCTTTCGT 77304 28 96.4 32 .............T.............. GCTGATTAACGATAAGTGGATGGAATTTCTGA 77364 28 96.4 32 .............T.............. GTGGAGGGCGGGTTTTACGGGTCGCTAATTGC 77424 28 96.4 32 .............T.............. GTGCACCGAATGTGGCTGTCGTGAAACTCGGC 77484 28 100.0 32 ............................ GTTAAATTCCAGCGTTTGGTATTGGGCAATCA 77544 28 100.0 32 ............................ AGCCACCTCTGCCAGTTTTCCGTACAGCGTGA 77604 28 96.4 32 ..C......................... AGAATGGAGCCAATCACGTTTCAGTACAATAT 77664 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 77724 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAACTATTTAATAAATAAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATAGTTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACAG # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAGCTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGTGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38988-40115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMDL01000019.1 Pectobacterium parmentieri strain RNS 08-42-1A Pw.RNS08421A_contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38988 29 100.0 32 ............................. CATTTACCCGACAGGAATAAATAATATGGCGA 39049 29 100.0 32 ............................. CGCTCGGCAGCAGCAGGCTCTATATGCTGGAC 39110 29 100.0 32 ............................. GCGCATCGCAAGGTCGAAGTCTGATTTAGTGT 39171 29 100.0 32 ............................. CAGTTGGGCCTCAAGTCTGGAGGGGATGAATC 39232 29 100.0 32 ............................. GACATGGAGAACATCAAGAACCTTGTTTGGAT 39293 29 100.0 32 ............................. AGACTGCTTAACTCTGCTGCCGTCTGGCGCTG 39354 29 100.0 32 ............................. AGCGGCACCGATTTGCCCTGACATTGACGTGT 39415 29 100.0 32 ............................. GTTCGTGGATCATTCGCCACTGGTGGATACCT 39476 29 100.0 32 ............................. ATCGCAAATAAGCCCAATAGGTCGATTCATTG 39537 29 100.0 32 ............................. AAATCGTTATCAGGGACGCCCATGTTTACGGA 39598 29 96.6 32 ............................T GGTTTAATGGCGAATCGGTGCCAAGAAAGGAG 39659 29 100.0 32 ............................. GCTGCAACTGAGTTTGCAGATCAAAGAAACTT 39720 29 100.0 32 ............................. CCTCCGAAGAGGCTATTCATCTGGTTTTAATT 39781 29 100.0 32 ............................. TCGTATGTATCGATCGCTGATAACAACACGTC 39842 29 100.0 32 ............................. GGGGCTGGTGTGTTTGGAGAGGCGGGGCCAGA 39903 29 100.0 32 ............................. GTTAGATAGCTCTCTCGTAACGGAGGTGATCG 39964 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 40026 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 40087 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATGCTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGTGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 41985-42806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMDL01000019.1 Pectobacterium parmentieri strain RNS 08-42-1A Pw.RNS08421A_contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41985 29 100.0 32 ............................. ATTGTTGTTGAACTGCTCCAGTTTCATGCCCA 42046 29 100.0 32 ............................. GTGTCGTACTCCACTGCCCCCTGTGTGGCTCA 42107 29 100.0 32 ............................. CCCTCTCCGGAGGGTTTTTTTACGTCTGGAGA 42168 29 100.0 32 ............................. GAAATCAGAGCCCTTGGTGGAGATGGGAGCGC 42229 29 100.0 32 ............................. CAGGTTCGCGGTTTGCAAGAATACGTCCGCGA 42290 29 100.0 32 ............................. CGCGATCCTGCCGTTCAGGTAATGTCCTACCG 42351 29 100.0 32 ............................. GGCGCTAGACTGGCTAAGACTGGATTCATCAA 42412 29 100.0 32 ............................. GTTTTTTTGATCTCTCGGAATCTACCAATGCA 42473 29 100.0 32 ............................. TCCTGTTGAGTTAACGCTATGGATTTAACTGA 42534 29 100.0 32 ............................. GAACATCATCCAACCATATTTTTTGGCGATAT 42595 29 100.0 32 ............................. CATGAAAGACAGATACCGTGATTTATCTAGAA 42656 29 100.0 32 ............................. GGCGGAAAAGCCGCATTGCCGTGGCAAGTTGC 42717 29 100.0 32 ............................. TTATTGAATGTTGTGATTGCCGGAATCAGATC 42778 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGAGTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGGTCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTTTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //