Array 1 321444-321133 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQC01000019.1 Rhodobacter capsulatus R121 seq0019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 321443 37 100.0 32 ..................................... CCTTTCGGCATCGTAGAACCTCTTGTTTAGGT 321374 37 97.3 31 .......G............................. GAAGCCGTTGATTTTCATCGGTCTCTCCTGT 321306 37 97.3 33 ..A.................................. TGATGGTCGCCAGCGGTTTGGTATGCTGGGAGA 321236 37 100.0 30 ..................................... CATGATGTTCCTTTCTTGGGTATGGGGTAA 321169 37 75.7 0 ....................T........GAACCCAA | ========== ====== ====== ====== ===================================== ================================= ================== 5 37 94.1 32 GCCTCACATCACCGCCAAGACGACGGCGGACTGAACC # Left flank : TAGGATCGCTTGACAGATGAGCGGGCAGCTCCTTGCGGTTCTTGCCATCGGTGCTGATCTTGCGTTTGAGCCCCCCCGCCGGATCGCCGAATTCGCTGATCGTCCGCCCTTGAACCTTGCCAATCTGCATTGTCGCGCCCCCAGCACAAAACCCACCAAGGCAAGGATGCAAGCCGTCAAGCCCATTCGCAACAGTTCCGTTGGGCCGGGCCGATTTGCCGCACCATCTGCCCGGTTTTCGACGTTCGGGGCGCGACAAAGCCTGTAGCCATCGCATCGGACTTCGCCTAGGCTTGCCGAAACCCGCCGCCTGCAGCGGCATCGGGTCGGAAATTCGGCAAGGAGGGTTCAGAAAACGCGCAATACACTGACACGGAAAGAGTAATTGCCACTGGAGCGGCGCGGAAATGCAAAAAAGGTCTCAAAATACGGCCTTGATCGTCCAGGGTTCCGAAACCCTGCTTGAAGATCTTGGCGTCTCAATGGCTTGCGGGACCTGA # Right flank : TGCAAACGGAGGTGCGGCAACAGCAAGGTTGCACCGGCTGGACTTCGGCGGCAGTCTGGCGCAACGGGGCGCAGGACACGGAAGATGTGGCGGGGGCAAGATGGACCTGTTTTTCAAGGCCACGGAATATGAGACCCTGCAGGCCTCATGGCTCAAGGTCCAGCAAAACGGCGGCGCGGCGGGGGGTGACGGCGTCACCATCGCCACCTTTGCCCAAGGGGCCACCGCATCTCTGCGCGATCTTGCGCTGGCATTGCGCGCGGGCGGCTGGCAGCAAGGCCCCTGCCGCCGCGTCGACATTCCCAAGCGCAAGGGCGGCACTAGGCGGTTGATGATCCCGCCGATCGCCGACCGCATAATTCATGGGACCGCATAATTCATGGGGCAATCGCCGAAACGCTGGAGCCGATCCTGGATGCGACGTTCGAGATCGGTGAGGGTGTCCGGCCGGGTCGCCAGCAGGCGCTCGAACTCGCTGCGGACCGTCAGCTGGAAGCGCA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCACATCACCGCCAAGACGACGGCGGACTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 199218-199468 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQC01000013.1 Rhodobacter capsulatus R121 seq0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 199218 37 100.0 33 ..................................... GTCGATCCGGTCTCAAGCTGCGCCTGCGTCACG 199288 37 100.0 35 ..................................... ACGGGGGCGGCGGCGAGGCAGGCGAAGGCGGCGGC 199360 37 94.6 35 .......C.............A............... TGCGTCACCTCCGATCAGCGCGAGGATGCGATCAG 199432 37 83.8 0 .......C..............C.......G..C.TG | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 94.6 35 GCCCAGATACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : TGCACGCGATCGTTCCGGCCCTCCCGGGGCAGACCGATGCGGCGGGGCCGCCCGATGGCTGGCTGCAACTGCTGCAACTCTCGGTGCTGGTGGCGATCATCGCCGGGATCTGGGCTTTGGCCGAGCGGGTCTATTTCCGCGACAAGCGGTCCTTCTGGGGCTGGCTGGCCTATGGTGCGGCGGCGGCGGCCTTTGCGGGCAGCGAGGCGCTGCATCTGTGGCCCGCGCCTTGAGGGGCTGCGGCACCCTGTCTTGCATCCCGGAAACTTCGCGGTGGACAGGGGAAATTTCGCCTGCCAATCTGACCTTGACGGCGGGAAAGCCGGGCCAAAAGGCCGATTCACTGTTGGAAAACCTGCCATGACCTTGAAAATCAAGGATAAAGGAGGAAAAACACGCGCAAAAACCGGGCTTGCAAGGGCTGTTTCGGGGCGTCGGGCACATCACGGTTGGAAAGCGGACCAAAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTGA # Right flank : GGGGTGTCGGTGTATGGGCCCGCCTGCGTGCGGATGTGGCGTGGTGACGCATCCTTGACGGCTGAAACATCAGGGCTTGCCGGGAATCATTCCTGCCCCTCTCATGTCCCCATTCATGCAGGGGGGCAGGATGTTCCTTTATCTCGAGGGCGTGAATCTTTACGCCACGATTTACGATACCGAAGACCTTTCCACGATCCGCGGCGGCTCGATGGCGCTGGAAACTCTGGCGCAGCGGGCGCAGGCGGCGCTTGGCGGCACGCTGCGCGGGCAAGGCGCCTCGATAGCGCTGTTGGAGTTTTCCGGCCCGCCCCCCGAGGAGGACAAGATCCGCGCCTTTCTGAGCGCCACGCCGCAATGCCATTTCACCCTCACCTGGGGCACGGGCGAGACCGAGGCGCAGGCGATCAAGGCGGCGCGAGACCGGCAGTTTTCGCAGCTTGCCACGGTGGTGCTGCCTGCGATCATGGCGGGGGTGCGCCCCTGTGCGATCGATCACA # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGATACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 205966-206141 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQC01000013.1 Rhodobacter capsulatus R121 seq0013, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 205966 37 100.0 32 ..................................... ACCCAGAACAGGTGTTTGAGCGGCCCACCCGC 206035 37 100.0 33 ..................................... GAATGACAGCAACGTACAGCATCGTTTGCCTTT 206105 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================= ================== 3 37 100.0 33 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : CAGCGCCGCCGCGCGCTGCTCGCTCAGCCGCGCCTCGAAGACCGAATATTGCACCCGCGTCGCGGCCCCTTCCAAAATCCGCGCCACCCGACGCCGCTTGCGGTCTTGCGACACGTCATAGGTGAAGACCATCAGCATCTCGGCGCGCGGCATGGCAGACCCTTTTCGGTGCAGATTTCGGGCCTCAGTCTGCCGCGAAACGGGGGGCTGCGAAAGCCCTTGCCGGGCGGGCGGCCCTGCGGCGGTCTGTCGTGGCGCGGGGCAATCTTGACGGTGGACAGGACGGATTTCGCCTGCCAGTTTGAACTTGAGAGGCGGAAAATCGGGCAAAATCGCCGATTCACCGTTGGAAACCCTGCCATGACCTTGAAGTCACAGGATAAAGGAGGAAAAACACGCAGCAAAACCGGGCTTGCAAGGGCTGTTTCGGAGTGTCGGGCACATCACGGTTGGAAAGCGGACCAGAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTAA # Right flank : CATGCCCTATTCAACGAGGGCGGCGCCACGGGACGGCAATCCTTGGCGAGTTCAGTAGTCCTGCAGCTGCGGCAGGTAGGGGACCGTTTCCGGGCTGCGGCAGTGGCGGGCGAGCGCGCGGGCCTCTTCGAGCATGATCCGGCGCAGGGCGTGGCGCTGTCCGGTCTGGCTGGAGCGGATCACCCGTTCCAGCGCCTCCTCGTAGCCGGTGATCAGCGCGCGCCGACCGGGGGTGAGGAGGCGCAGGCTGTCGCCCTGCGGCTCGAACATCTCCTCGCGCAGGCGGCGGCGGTTGAAGAGGCTCACCGCCAGCCCCTCGGAGAGGGTGGCGCGGAACACCTCCATCAGGTCATAGACGGCGGCGTCGCCCCGGTCCTGCGCCTGATGCAGCACGCCAAAGCCGGGGTGCAGCCCCGCGCCGATCAGCGCGGCGCGGATGTCGCGGGCCAAAAGCGCGGTCAGGTAATTGATCGCGGCGTTGAGGGGCGTTTTCGCCGGGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 208314-208636 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQC01000013.1 Rhodobacter capsulatus R121 seq0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 208314 37 100.0 34 ..................................... TCTTCCATCGAGCACTTGCAACCAAACACCCCGT 208385 37 100.0 34 ..................................... CTCCTTTCTCCACCCCGCGGGGTGTGCGCACGTG 208456 37 100.0 37 ..................................... GGGCGTATTCACGGCCCACCAACGCCCCCCATGCGGT 208530 37 100.0 34 ..................................... GGAAGATTTTCGGTCATCTTACGCGATCCGCATA 208601 36 81.1 0 ..................T.CA.......G.C-..C. | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 96.2 35 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : GGTAGCCGTAGCTGTCGGGGGAAAACAGCGGCTCGAGCCGGGGGTCAGCGCGGCGGCGACGGCGGTTTGCACGATCCGGTCGGAGACGGCGGGGATGGCGAGGCGACGGGTGCCGCCGTCGGGCTTGGGGATCTCATGCAGGCGCAGCGGCCGGGGTGCGTAATTTCCGTTGCGCAACAGCCCCGACAGCCGCGCGATCGCCGCCGCCCCCTTGGCGGCAAAGGCTGCGATGCTTTGCCCGTCGCCCCCCGCACATCCGTTGTTGCGCCGCACCTTTTCGAATGCCAAGGTGAGGGCATGGGGGTCGGAAATCTGGCCAAACAGGCCCGAAAATCGGCCTTCGTCGTTGGAAATCATGCCATGCCCCTGCGGGATAAGGGAAAAAGCGAGGTGAGAGACACAGGAAACCAGAAAATCGGGCCCGAGTCGAGGGATGCGGCACGTCACGGTTGGAAAGCGGACCAAAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTAA # Right flank : CGAGGGGCGTCAGCCGCACCCTTCCCGCGCCGATGGTGGTGTCGGCGCCGATGTGCAGCGCCTCGGCCAGCGTGAGCAGGCGGCGCAGCTCGGGCGGGGGCGCGGAAAAGGCGATGCGGCCGGAAAAGCCCGGACGCGGTTTCGTGCCCCGCGCCAGCGCCCGCCGTTCGCCCGCAACGGCCGGGGGGGCGGCGCGCAGCGCCTCGGCCAGCTCCGCCTCGGGCAGATCGAGCGCAAAGCCGTGCCACTGCGCGATCCCCTTGGCGCGTTTGGCAAATCCTGTCAGCAGCGAGGCGGGATCGAGGCCCAGCCCCGCGTGATCGGCGCGCAGGCGCTGGATGATCGGGGTTTGCGTGCGCAAAGCCAGCGCCCCCGCAGGCGGGGGGGAAGCCGTCAGTTGCGCATGGGACACGGCGGTGATCTGCATCGGCACCCGGCCCGCGCGGCCCAGATCAAGGCCGCCGCGCAGCCCGGCAATCAGCGCGGCGCGAAACTCGGGC # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 245031-249350 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQC01000013.1 Rhodobacter capsulatus R121 seq0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 245031 32 100.0 37 ................................ TGCACCCGCTGGCCCTGCCGGTGATCGGTGATCAGCG 245100 32 100.0 34 ................................ ATCGCCGCTTTGGCGGTCGACAGGCTGGTAACGT 245166 32 100.0 35 ................................ ATCTCGGTGCCGTCGCTCGTCCAGCCGGCCTGCTC 245233 32 100.0 34 ................................ CACCTTGCGGATTGTCACTTTCGCGGGGCGAAGC 245299 32 100.0 34 ................................ ATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCA 245365 32 100.0 33 ................................ TGGTATGGATCTGGCGCAAACGGAAAGTCTGTC 245430 32 100.0 36 ................................ CTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGAC 245498 32 100.0 35 ................................ TGCGCCGCCTATCGCATCCGGTCGAGCGCCGCGCA 245565 32 100.0 34 ................................ GATGCGTTCATGGCCTACGTCGGGCAGTGGACTG 245631 32 100.0 35 ................................ TCGCCCTCGATCCGCGCTTGCCTCACGCCTGCCGC 245698 32 100.0 35 ................................ AGGCGCATCTGATGTATATGCCCGGTGAGACGGCT 245765 32 100.0 36 ................................ TTTTCGTCATCTGGCAGGCTCGCGCCGCCACGCTGC 245833 32 100.0 36 ................................ CCGGCGAAAAACGGCCATGCCTCCGGGTGTCTGGCT 245901 32 100.0 35 ................................ AGCAGGTCAGCCGCGGCCCCGGTGAACTTCTGTTC 245968 32 100.0 36 ................................ AAGCAGTGGGGTGAGTGGGCTGACCAGACAAACGCT 246036 32 100.0 36 ................................ CGCGCCCTGCGGGTGATGGCGACGGGCACCACGGCG 246104 32 100.0 37 ................................ GGACCTGAAATTCCGCGGGAAACGCGGCGGCGAGCAC 246173 32 100.0 34 ................................ TGCTTTCGTGGGACTGGCCAGCCGCCCGCGCCAA 246239 32 100.0 34 ................................ GATTTCGTCGCTTACGACGCCTATCTGATTTCGG 246305 32 100.0 35 ................................ CATGCGGCGATAACTCGCTCTTGCGATCCGTCATC 246372 32 100.0 33 ................................ CCTGTCCCTCATATGCTGCCACGATGCCCTTGA 246437 32 100.0 33 ................................ CGTGTGGATGATCATGCAGCGCGGACGGCTTGG 246502 32 100.0 35 ................................ CGGTCCAGAGATAGACCGCGCGGACCTCCTCAGAC 246569 32 100.0 34 ................................ AGCCTGCGCGGCCGCATCGGCTTCCGCCTGCGTG 246635 32 100.0 33 ................................ ATCAGCTCGTCGTTGGTCAGCCGGACGATGTCC 246700 32 100.0 34 ................................ TGCCGTCTTGAGTGATGGGGCGCGAGCACATGTC 246766 32 100.0 35 ................................ GTCCAGCTCGCGCCACATGTCTTCGACCGTGCGCC 246833 32 100.0 35 ................................ GTGTCTGCCACGACGCCCTGCACCAGATCCGCGCC 246900 32 100.0 35 ................................ ACCGCGCACGCGCGAACGGCGTCAGCCCCGCGAAC 246967 32 96.9 35 .................A.............. GGCTTTACAGCCTTCGCGCCCCACGCCAGACGGAC 247034 32 100.0 34 ................................ TCTTCAATGGATATGGCAAAACCGTCCGCGACAT 247100 32 100.0 34 ................................ ACCGTCATCACCACGCAACCGCCCTGCACCACCG 247166 32 100.0 35 ................................ AACCCGATCATGGCCCGCCTCAGCGCCGCGCTGAC 247233 32 100.0 34 ................................ ATCCGCGGATCGGCGTGACCCGCCCCGCCCATCG 247299 32 100.0 35 ................................ TACAGAGTTCCGGTCTTGTTCTGTTCCGGTAACAG 247366 32 100.0 34 ................................ TTGTCTGACGCGCTCATCAGCACGTCAAGATTCA 247432 32 100.0 36 ................................ TCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTG 247500 32 100.0 35 ................................ ACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGAT 247567 32 100.0 34 ................................ TATGCTGGCTCGACCGAGTTCACGGCGGGCTATC 247633 32 100.0 36 ................................ GGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC 247701 32 100.0 36 ................................ GCTGCTGACACCGCCAACAAATATGTGGTCAACACT 247769 32 100.0 35 ................................ GCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCG 247836 32 100.0 36 ................................ TCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTG 247904 32 100.0 35 ................................ TTGATGACCAGATCCGCAATCGGCCGGGCTCGATC 247971 32 100.0 36 ................................ CTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCG 248039 32 100.0 35 ................................ ATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC 248106 32 100.0 35 ................................ GGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGC 248173 32 100.0 35 ................................ ATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGC 248240 32 100.0 35 ................................ CCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCG 248307 32 100.0 34 ................................ AACTGACCCGGCAACGGCCTATGCGCTGGACGTG 248373 32 100.0 33 ................................ TACACCGGGGCTCTGGTCACGGTTTGGGACGGA 248438 32 100.0 35 ................................ AGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTAT 248505 32 96.9 35 .......A........................ TGTGCCGGTTCCCGGAGACGCTGGGGCCCTCGCAC 248572 32 100.0 35 ................................ AATGCGGCGCGGGCCTATGGCTGACGGACCCGCCC 248639 32 100.0 37 ................................ TGCGTGCGCGCCATGAATTCATCGAGCGCCATCGAGC 248708 32 100.0 36 ................................ ACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCG 248776 32 100.0 35 ................................ AAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGC 248843 32 100.0 38 ................................ CCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGC 248913 32 100.0 35 ................................ ACCCCGAACCTGTCGGCGGCGAACACCGATACCGC 248980 32 100.0 36 ................................ ATCGATGATCAAATCCGCAATCGGCCGGGCTCGATC 249048 32 100.0 38 ................................ GGTGTCCAGCGTCACATGCAGCGGCGTCGCATCGCCAT 249118 32 100.0 35 ................................ CCGGCACCTCAGCCCCGCCCGCTGTCTCACCAACA 249185 32 100.0 36 ................................ TCTATGGGAGGCTAGGGAGGCTACGCACCTTCAAAA 249253 32 100.0 34 ................................ CGCCGCGCAAAAAGCCCGCCAAGAAGCGGAGCAA 249319 32 93.8 0 ............................T..G | ========== ====== ====== ====== ================================ ====================================== ================== 65 32 99.8 35 GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Left flank : TCGACGCCTATCCGCCCTGGTTCTGGAGTTGAGATGCTGGTTCTGGTCACCTACGATGTGAACACGCTCGAAGAGGGCGGCAAGAAGCGGCTGCGCCGGGTGGCGAAAGCCTGCGAGGATTTCGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAGGTGGACCCGGGGCAATGGGTGAAGCTGAAAGCGCGGCTGGAAGCGGTCATCCGGCCGGAGTTTGACAGTCTGAGGTATTATTATCTGGGGTCGAACTGGGAGCGGAACGTTGAACATGTCGGCGCCAAGCCTGCGCTTGACCTGAACGGCCCGTTGATCCTCTGATCTGCGAACCCCAAGGGTGTGGCCGTTTCCCACCCGGTTCGCACCGCGTCAGCTCTTTGAAATTGTGGATGAAGCACCGGAGCACCTTGCGCTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCA # Right flank : GCGGTGCATCGGCCCGATAAACCCCGATTTTCGGCCCCTGAGGGGAAAGATTCTTGGCACAATTCCGCGCCCGGGGTCGAATCGGGCGATGATCGGAACGGTGGTGGAGGTGGGCGCGGACCGGCTGAACGCCTGGTTCGGGACCGCTGCCGCGGGTCGCTGATACCGCGCCCAGCTCTCATACGGGGCGATGGCGATGATGCTCCTGCGGACCTGACGGGATGCCGGACCGCCTGCGGCGCTCAGGATGTGACGGAGTTGGGGAGCGAGAACCGGCTACGGTCGGTTCGAGACCAGTGTCGCGGACTGTCGCCACGCGGATGCCGCCCCCCTCGGCCCTCATACGGGACGATGGCGGTGCTGTTCCTGCGGACCGGACGGGGTGTCGGCCTGCCTGCGGGTCGCAAAACGGAATGGAAATGAGCGCGACCGGCGTGCGCCTCGAACGCGAGGCCCTGCGGTGGGCGCGGCGGCGGTCAAATGTGTCGGGGAGCGTGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 285632-285992 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQC01000013.1 Rhodobacter capsulatus R121 seq0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 285632 32 100.0 33 ................................ GTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT 285697 32 100.0 34 ................................ ACGGATTGCATGGCGCCGAGGGACAGGCTTTGCA 285763 32 100.0 34 ................................ CGCCCGCGGCGTTTGACCTGGTCGCGGGCAGCTG 285829 32 100.0 35 ................................ GACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTT 285896 32 100.0 33 ................................ ATGGAAAACCGCGGCTTCACCGCGCGGGATTGG 285961 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Left flank : CAGCGATATCTCGGCGTCGCCGATCCGGATCTGACAGGCGGCCGCGTCAGCGGCGCCTTTCTGCTTCGCTTGGCGCGCCGGTTCCGAAGGGACCATCACCTCGACGAACTGCGGAGACTTGCCCTGCGAAGCAGCCTTTCCCTGCGGCCTCCCCCGGCGCGGCAGCTCGGGCAATTCGGCGCGCGCCCATTTCGCGACTAGGGACTCATTGGCGCCGATCTCCTTGGCGACGGTGACGATCTTGGTGCCGGCCTCGATCTTCTTCACCGCCATCGCCTTGATCTCATCGGGCCAGACTCGACGCCCGTTGTCGGCGGTGATCACCGGGATTCCCCAGACCACCACATCGCCGCCCTCCTTCTCGTCCAACATCTCGACCTCCTTCGAACAGAGAGAGGGCGATCATCGCAAAACCCTTATTTCATTGGAACATGGGGTATATGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGG # Right flank : CCGTGATGCGTGCCCGATCCATCGGGTTTCGCGGCCGATGCGGCTCCCGAAGTGATCAAGGCTGGTGCGCGCAAATCCATCGAGCCAATCGGGCGCCCAACGATCCGCCGCGACATGTCCGAAAATCGGACGCTCTGATTGCGAAAACTCGGCTATCCTGTTGCGGTCTTCCAGCTGCCTGCACACTGTGCCGGCCTATGGAACGGGAGATCCATGGACCGGGAGACCGCTATCGACAGCAGATCGGCCATTCGTTCGGGGGAGGAGCAGATGGCACACCGTATCAGAAAGCGCGGCTGGGAGGAGTTCATGGCGGTTGGCCGCGCGTCTCCGGATGTCCGCAGCGAAGTTTTGCAGAGTTGGCAGCGGTCCGCGGGGCGACGGATCGAAAAGCTGAAACAAGCGCCGCTCCTGAGCGAGGAGGACTTGCTGACGCAGAGGGCGCAGGCGCGCCGCCTGCGGTCCGGCGCGCGCGGGGTTCTGAACAGGGCAGGAAGTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //