Array 1 14-378 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAEK01000031.1 Campylobacter coli strain MON316 1010400031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 .................................... TTTAAAGTGTTTGATAAGCGATTTATTTAA 80 36 100.0 30 .................................... TATTTTATACAAATGCCATACAACTGCCGA 146 36 100.0 29 .................................... AAATGCAAACAGAAGATGAGTGCAAAACT 211 36 100.0 30 .................................... GTAACCTATCTTATTGCTGAAACAATGGCA 277 36 100.0 30 .................................... TGTTTTGTTTGTAAGAGCTAATAAAAGCGA 343 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : GCGATTTATTTAAG # Right flank : TAGACTTTGAACAAATAAAGAAAAATAGAGCTTTTTGTATACAAAAATGTATAAAAATATGCTATCATTTTAAAAGAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTCGGTTAGCCACGCAGGGTTACAATCCCTTTAAAACCGTTAAAATTCAAACAAACTAGCTTGTCTAATTTTATTAGACTTAGTTTTGTTTTCTTTACATATCTTGTCATTGCTGTATTTAAAATCTTGTGTTTTTTCATCGTATTCAAAAAGAACTAAATTTTTATCATCATTTATTTTTTCATTAAAAGTAACTCCACCTAAAAGTATTTGCATATTGTCAAATTGTTTTTCGGTTATGGTTAATACTCTTATATTGCCACAAGGAGGTAAAATTCTTTCTACGGATTTGATTGCTGTTTTAGCCGAAGTCATTCCTTTACAAATTTTAACATATACGCTAAATTGCATCATAAAAAAGCCAAGTTTTACAAGCGAAACTCTAAATTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.78%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 586-1280 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAEK01000056.1 Campylobacter coli strain MON316 1010400056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 586 36 97.2 30 .............................G...... ATATTCTCTTTTTTGAATGGCATTATTTAT 652 36 97.2 30 .............................G...... AAAAGGATTAGCATGAAACATGAAACTAAA 718 36 100.0 30 .................................... TATCAAATATCTATTAATCAAAAAGCCATT 784 36 100.0 30 .................................... AGCGATGAAGTGCGTAAGAACATAGAAAAG 850 36 100.0 29 .................................... TTAAATCTATACCAGCAGAAGCAATAGAA 915 36 100.0 30 .................................... ATTATGCAAATGATCCTCATCATAGTAATT 981 36 100.0 30 .................................... TTAAAAGATATAGTGAAACTAAGTCGCATT 1047 36 100.0 30 .................................... ATAACTTCTCTGTATTTGTCTAGCTCAGGT 1113 36 100.0 30 .................................... TATTTTTATAAAAAGGTTCAATATCAAATA 1179 36 100.0 30 .................................... TTCAATGAAACCACAGGAAAATTAGAATAC 1245 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.5 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : AAGACCATTACAAGCTTCTTTTATATCTAATTCACAAGCTTTTTCATAGTATTGTTTAGCTTTAGAATAATTACCTTGTTTATGTTGTTCTTTTCCAAGATCAAAATAATTATCATTTGAATAAACGCAAACAGGTATTAAAGTAAATACAAATATGAAATATTTCATTACCATCAATTTTCCTTTTAAAGCTATATTATTTGAAATTTTTATATTCTTTACAATCATATTCATCTCCTAATTCACAAGATTTTTCATAATTAATTCTTGCTGTATGGCAATCTCTTTCGATGTACTTACACTTCTTTAATAAAATAACCATCGTTCGAAAATACATTTGTTGTTAATAAAATTAAGAACTAATATATTTAATTTTATTTGTTGCCTTTTATAATTAATTGTTAATTATAGCATAAATTATAATTTACAATTGATAATATGTTATGTAAAAATTAAAGTTTGAAAAAATTTATTTTTTCAAATTCCAAAAGCGACATATT # Right flank : AACGATTATTCTACACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //