Array 1 3480639-3478741 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016408.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3480638 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 3480577 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 3480516 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 3480455 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 3480393 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 3480332 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 3480271 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 3480210 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 3480149 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 3480088 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 3480027 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 3479966 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 3479905 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 3479844 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 3479783 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 3479722 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 3479661 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 3479600 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 3479539 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 3479478 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 3479420 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 3479359 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 3479298 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 3479237 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 3479176 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 3479115 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 3479054 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 3478993 29 100.0 11 ............................. CGGCCAGCCAT Deletion [3478954] 3478953 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 3478892 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 3478831 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3478770 29 93.1 0 A...........T................ | A [3478743] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3498537-3496921 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016408.1 Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3498536 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 3498474 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 3498413 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 3498352 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 3498291 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 3498230 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 3498169 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 3498108 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 3498047 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 3497986 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 3497925 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 3497864 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 3497803 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 3497742 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 3497681 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 3497620 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 3497559 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 3497498 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 3497436 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 3497375 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 3497314 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 3497253 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 3497192 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 3497131 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 3497070 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 3497009 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 3496948 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //