Array 1 215989-213092 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSS02000005.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0381 NODE_5_length_424351_cov_37.431470, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 215988 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 215927 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 215866 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 215805 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 215744 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 215683 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 215622 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 215561 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 215500 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 215439 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 215378 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 215317 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 215256 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 215195 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 215134 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 215073 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 215012 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 214951 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 214890 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 214829 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 214768 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 214707 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 214646 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 214585 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 214524 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 214463 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 214402 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 214341 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 214280 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 214219 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 214158 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 214097 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 214036 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 213975 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 213914 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 213853 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 213792 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 213731 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 213670 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 213609 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 213548 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 213487 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 213426 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 213365 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 213304 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 213243 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 213182 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 213121 29 96.6 0 ............T................ | A [213094] ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 233379-232740 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSS02000005.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0381 NODE_5_length_424351_cov_37.431470, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 233378 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 233317 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 233256 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 233195 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 233133 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 233072 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 233011 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 232950 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 232889 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 232828 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 232767 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //