Array 1 162342-160865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBH010000001.1 Salmonella enterica strain 287 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162341 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162280 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162218 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162157 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162096 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162035 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161974 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161913 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161852 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161791 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161730 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161669 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161608 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161546 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161443 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161382 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161321 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161260 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161199 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161138 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161077 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161016 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160955 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160894 29 96.6 0 A............................ | A [160867] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180089-178474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBH010000001.1 Salmonella enterica strain 287 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180088 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 180027 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 179966 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 179905 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179844 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179783 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179722 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179661 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179600 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179539 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179478 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179417 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179356 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179295 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179234 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179173 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179112 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 179051 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 178989 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 178928 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 178867 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178806 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178745 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178684 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178623 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178562 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178501 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //