Array 1 99561-100689 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT607413.1 Micromonospora echinospora strain DSM 43816 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 99561 28 100.0 33 ............................ GTAGGCGGCGGGGCCGACGTGACATATGACGAT 99622 28 100.0 33 ............................ CAGCCCCCGCGCTACGCGCACCGACGCGAGCAC 99683 28 100.0 33 ............................ CTGGTCCGGGGAGAGGATGCCCACCGATGCGTT 99744 28 100.0 34 ............................ CTACAGACCACGTTGAAGGGTTGGAGCCACGAGC 99806 28 100.0 34 ............................ GGCCGCTCACTCGCTGCTGCCGGTGATCCGTGCC 99868 28 100.0 33 ............................ GTCACCGGTCGGGCCCGCCGCCGTGTGCGGCCA 99929 28 100.0 33 ............................ CGGCCACGGCGGCATCGTCGCCGACCACCACCA 99990 28 100.0 33 ............................ CACGTCGTCATCGACCGCAACGGCGACCAGGTG 100051 28 100.0 33 ............................ CAGGCCGTGGTCGTGGCCCAGGTCGAACGCACC 100112 28 100.0 33 ............................ CCACTCCTTTTGGATCTCCTCCACGGAGGTGGT 100173 28 100.0 33 ............................ CTGGTCGGCGTACTTGGAGGCGCTGCCGCGTTC 100234 28 100.0 34 ............................ GTACTGCCGCGCCGTCAGCCGCATCATGTCGGCC 100296 28 100.0 33 ............................ CTCGTGGGTGAACGTCCAGCGGGCATGACCGCT 100357 27 96.4 33 ...........-................ CACCAGCCAGCAGCACTGCCTGCACTGCGGCTA C [100371] 100418 28 96.4 33 ................T........... GGTCACGCCCGGCAGCCTCGGGCCGTACGACCC 100479 28 100.0 33 ............................ CGTCTCGCACCCGGTCGCGCCCGGCGAGCGTCG 100540 28 100.0 33 ............................ GGACTCCGGCGCGCGCTACTCGGAGCTGACGCC 100601 28 100.0 33 ............................ GGTGTCGGCGCAGAGTCCGGAGGAAACGCCGGA 100662 28 96.4 0 ...........................A | ========== ====== ====== ====== ============================ ================================== ================== 19 28 99.4 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : AGGGAGGCACTCCCCTGCTGACGAGAGGACCTCACAGGGAGGAACTTAGAAGGCAGTGCCTGCACAGTCAACAGAGCATGCACGGTGTGTCACTCCTGGTGCGAAAATCGGGCCGCTGACGAGAGGTGGCACGACCATGCCGCAGGCACCGCTATACGAGCAGCTCATCGCCGACGTGACAGCGTCGATTCGCGAAGGCACGCTGCAACCGGGTGACAAACTGCCGTCTATCGCCGAACTGCGCGAGCAGTACCAGTCGAGCGCGTGGCCAGTCCGGTACGCCCTCCGGATCCTGGAGGAGCGCGGCTGGATCATCACCCGGCAGGGCAAGGGGTCCTACGTGGCACCAAGCCCGCCCGCCTAGATCAGGCAAGCCCTCAGACGTACGACCGATAGCCTAAAGGCTGAACAACCACCCACTACCACTCGGGAAATTGATCTTGAGAGTCAAAGTGAACGAAAACGCAGTAGTTGATCTTTAGAGCCTCAGGTCAAGAAGT # Right flank : AAATGACCTGCCGCGCGAGCAGCTTGAGGGCGCGTCGCCGGACAGGTGTAGACCGACGCCCTGACCTTGAAGACCGCGTGCCTCTCGGTGCCGCGACCGATGTCGACGATGCCCGCCAGGCCGGAGTCCTGACCCGCGCCGCAGCCGGTGACCCCGCCCTCGGCCACGCTGCCCACGCCACCCTCACCCACCAGGCACAACCTGACAGATGTCGATCTCAAGACCGTCGATGCCGCACAATGACCCTGCACTTGGCGATCTCTGAGGCACCCGGCCTCAGGTCGTCGGGAGTCCGGGGAGGACGACATGCGGTTCGCTAGACGACTGACGCTTTCGGTCGCGATGGTTCTCAGCCTTCTGGTCCTGTCTGGGCAGCCGGCCCAGGCCGCCTACTACAACACGTACAGCGACATTGCCAGCACACCCGACACAGGATGCTGCACCGGGGTACAGGGCTTCGCCGCCGGAGCCACCTACCTCTACTCGGTCAAGACGCGCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 2416827-2417830 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT607413.1 Micromonospora echinospora strain DSM 43816 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2416827 37 100.0 37 ..................................... ACGTCGACGCCCCCATCGTCGCGGTGACCGTCTACGC 2416901 37 100.0 36 ..................................... TACATGGCGGTGCCGTGGCTGCTCGACTCCTTCAAC 2416974 37 100.0 35 ..................................... GCCGCCGTGGCGACCAGGTCGGCGGCGAAGTCCGG 2417046 37 100.0 38 ..................................... CTCGGGCGTCGGGCCGGGCGGGGGGCCGTCGACGAGCA 2417121 37 100.0 36 ..................................... TCCAGCCCGAACGTGAGTCCGCCGGCGAAGTTGGAC 2417194 37 100.0 36 ..................................... CCCCTGGAGCTGGGGCCGTTCAGGTGGACGATGAAG 2417267 37 100.0 38 ..................................... CACAGGCGGGCAATGGCGTTGAAGCCGGACCGGAACGG 2417342 37 100.0 38 ..................................... ACGCCCATGCAGACCACGCCGCCGATCGTGGAGCGCAC 2417417 37 100.0 38 ..................................... GCTGTCATTCGCTACCGGCCCGGCGATGACCCGACCGT 2417492 37 100.0 40 ..................................... GGCGAGCAGTCGTACGGCGAGGGCGACGACCCAATCGCGT 2417569 37 100.0 38 ..................................... AGTGCGGTGACGGTGGACCTGGTCGCGTCGCCGGAGCT 2417644 37 100.0 38 ..................................... GGCTACATCACCTGACCGGGCGCGATGCCCGGCCCGAT 2417719 37 100.0 38 ..................................... GTCGTACCTGGAGGTACCCATGGAGTACGGACCCACCC 2417794 37 83.8 0 ......T.......................A..TGTA | ========== ====== ====== ====== ===================================== ======================================== ================== 14 37 98.8 37 GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Left flank : GCCGCAGGATCCGATACACCGTCGCCCGAGCCGGTGGTGGAGTCACCCCGCGACGACCCGCCTCGAACCGCAACCGCCGCGGACCCCACCGCGGATGATCCCGCCGCAGCTCACACACCAACGCCTCCGTCGCGGCGTCAACCCGGTGCGGGCAGACATGCGGACGATGCGACCGGTCCTCCAAGCCCTTGACGCCCTCGGCGGCATACCGGGCCAGCCAGTTGTGAATCGTCTGCCGCGACACCCCATACCGGGCGGCGACCTCCGTCTTCGGCGTCCCACCCAAGCACTCCATCACGGCGTGAAACCGCTGCTCCATAACGCTTAACTCCGCAAGCCTCACCCGGTGCTCCTCCCGCCTGAGTTACAGACGCAACGAGCACCAGGCCGACCAGGTGTCAAACGTCAACCGAGGCCGCCGTGTCAAGCATCAACCGGCGTAGGACACCGGGCGAGGATCGCAACTCGGTTGCCGCCGGCGTGGCGCGACACATCCACAC # Right flank : AGTGCATCTTCGTCGTCGGTCGGATCCGGGTCCTGGTCGACAGCCAGTACCGCAACCACCGGGCGGTCGTCCACGACCGGCCGGCCTGCTGCTCGCGTGAAAGGAGCAGGAGTTCGTCCCGAGCCTCCCGCGCCGCCGCTTCCGACGCGTAGCCACCTCGGCGTACCCGTTCCGCCTGTCCGAGCAGATTCCGCGTGGAGCAGTGAAAGTACCAACTTCCATGGTCACGCTCCGGCAACTTCGCACAGGTCTTGCCCAGCGTTCGGCGGGTTACCGGGTCCAGGCAGCCGCACCGCTTCACGATCGCGCCGTAGCTTCTCATCGCTTTTCTCCCTTTGTCGATGGTGGTCACACCCTGACGCAGGGAGTCTGGGTAAAAATCGTTTTCCGCGCCGGTTCACGTATTCGGCCGACTACGAGTCATTCGGTGCGAATAAAAGGCTTCGGTCCGGCCCCGTGGTCCGGGATTGGACCTTGGTCCGGGACCGGGTCGGAAGGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGCGCCCGGCCACCGCGCCGGGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.20,-17.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //