Array 1 6197-9932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGVRB010000059.1 Listeria monocytogenes strain 7553 7553_NODE_13_length_14997_cov_47.933922, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6197 36 100.0 30 .................................... ACTCTGGTTGTCTGTCTTTCCGCTCTGATA 6263 36 100.0 30 .................................... TCAATTTAACGACGGAAAAGAATATCGATT 6329 36 100.0 30 .................................... TTATTTGCCACGATATGAGTTTTCTTAGTC 6395 36 100.0 30 .................................... ATATTTTCCAACCGATTTCGGAACGTAATT 6461 36 100.0 30 .................................... CGCTACCATGGCAGAAGTAACAACCGTCAT 6527 36 100.0 30 .................................... CGTGAACTTTTTAGATCTATTCGCTGGAAT 6593 36 100.0 29 .................................... TTTTGCAAGAATGGGAAGGCGAGTATACT 6658 36 100.0 30 .................................... CGGGTTACTAATCATTAAGTCACAATTAAG 6724 36 100.0 30 .................................... TGAAGTTTTAGTGTTATTGTTGTAACCTGC 6790 36 100.0 30 .................................... ATTGACGCAGATTCGTTTTATACAACACCA 6856 36 100.0 30 .................................... TTATGCAGATTTAAGACGTGCAGATTTAAG 6922 36 100.0 30 .................................... AAGATAAATAATACTTCTTCCATTATTTCT 6988 36 100.0 30 .................................... GCGTGCGAGTTTCTGCTAAAACTTGCATCG 7054 36 100.0 30 .................................... ATAGAATTTAAATGATTAGAAGGGAACTCT 7120 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 7186 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 7252 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7318 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7384 36 100.0 30 .................................... TTGATTTTTGTACTAGGCTTAGCAGTTAAA 7450 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7516 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7582 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7648 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7714 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7780 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7846 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7912 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7978 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 8044 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 8110 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 8177 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 8243 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 8309 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 8375 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 8441 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 8507 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 8573 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 8639 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 8705 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 8771 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 8837 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 8903 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 8969 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 9035 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 9101 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 9167 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 9233 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 9299 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 9365 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 9431 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 9497 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 9563 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 9629 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 9696 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 9762 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 9828 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 9894 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [9919,9925,9928] ========== ====== ====== ====== ==================================== =============================== ================== 57 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 3-161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGVRB010000036.1 Listeria monocytogenes strain 7553 7553_NODE_38_length_28019_cov_52.433743, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 3 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 68 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 132 29 93.1 0 .......................A....C | C [155] ========== ====== ====== ====== ============================= ==================================== ================== 3 29 97.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : GGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1194-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGVRB010000057.1 Listeria monocytogenes strain 7553 7553_NODE_49_length_15994_cov_41.133862, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1193 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 1127 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 1062 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 998 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 932 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [923] 864 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 799 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 734 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 668 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 604 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 539 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 474 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 409 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 346 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 283 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 217 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 154 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 89 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 18 29 100.0 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TAAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGGGTTTTAACTACTTATTATGAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //