Array 1 43273-44549 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VSUB01000009.1 Ligilactobacillus salivarius strain FYNDL5_1.scaf Scaffold9, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     43273	    36	 100.0	    30	....................................	TTCCATATCTGTTGTAATTATTGGTTCACC	
     43339	    36	 100.0	    30	....................................	AGAACTTGTGAAGTCTGCTGTTAGATTTCA	
     43405	    36	 100.0	    30	....................................	AACATGCTTTTTTCATATTATCCATAGTCC	
     43471	    36	 100.0	    30	....................................	GTTAGGATCATAGACTTCATACTTTTGTCC	
     43537	    36	 100.0	    30	....................................	AAACAACAGGAGAAATTTTTTCTCAAATGA	
     43603	    36	 100.0	    30	....................................	CGGACGTTCGCCATTATTGTCATTGAAAGA	
     43669	    36	 100.0	    30	....................................	TTTGTTTTTTTGTGCTGCAGCTGCTAGGAT	
     43735	    36	 100.0	    30	....................................	ATTTGCTTGGTTGCTACTGCATGAAATAAT	
     43801	    36	 100.0	    30	....................................	AAAATAAAAATATATAAAAAATAAGCCCAC	
     43867	    36	 100.0	    30	....................................	TTATGTAGAACATCAGCGAAATATTAAACG	
     43933	    36	 100.0	    30	....................................	AGAAACCTAAATTCATGGAACTTGATGACA	
     43999	    36	 100.0	    30	....................................	AATGTTGGAAATGAGAGGCAAAACGAAATA	
     44065	    36	  88.9	    30	A...T...A.A.........................	TGATACGCTTATCACTGTTAGTCAATGTAA	
     44131	    36	  97.2	    30	........A...........................	AATTGGTAATCTTTCCTAAAGCTACTGATA	
     44197	    36	  94.4	    30	........A...............A...........	ATGAAGAAAAAATTAAACGATTGGAGGAGA	
     44263	    36	  94.4	    30	........A.A.........................	CATCAACGAAGATATGGTACATGGTCAAGG	
     44329	    36	  88.9	    30	........A...........T....GA.........	TACTTTCTTTTATGATATAATTTAAACATA	
     44395	    36	  75.0	    15	........A....A......TCT.......TG..AA	AACACAGGAGGATTA               	A,A [44415,44423] Deletion [44446]
     44448	    36	  88.9	    30	........A.A.............A..........T	GATCTACGTTACATTTTCTTAATGTTCACA	
     44514	    36	  75.0	     0	......T.A.A.........T...AG...CG..G..	|                             	
==========	======	======	======	====================================	==============================	==================
        20	    36	  95.1	    29	GTTTCAGAGGTATGTTAAATCAATTAGGTTAAGACC	                              	       

# Left flank :   AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGTGAGGTTTTGTATAAAATTGATATACCCTTACAAGCAGATTATGACAATGATTTAACAAGACTATTCAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCATATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTGAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACT
# Right flank :  CTAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTGGGGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGTTATTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGCAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCGTATCAAGGGAGAAATCGCAGATATTATCGTATAACAAATAGTGGAGAAGAGCATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAATAGAGAGGGGGAATAATAATGAACTCA

# Questionable array : NO	 Score: 5.94
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTCAGAGGTATGTTAAATCAATTAGGTTAAGACC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [-0.10,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-37] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.41,0.27   Confidence: LOW] 

# Array family : NA
//