Array 1 175876-175176 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081497.1 Streptomyces sp. BHT-5-2 plasmid p1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 175875 29 100.0 32 ............................. GTCCTCGCGCAGCATCGCGTCGATGAAGCCCT 175814 29 100.0 32 ............................. ACCACCGGGTGTTCGCCAGTACCGTGCTGGGG 175753 29 96.6 32 ............................C GCCAGTCCGGCCACGGCAGGCTCAGGGAGATC 175692 29 100.0 32 ............................. ATGGGCGGCGTCGGCGGGGTAATGACGAAGCT 175631 29 100.0 32 ............................. AAGGTGCTCATGGTGTACCCCAGCACGTCGTC 175570 29 100.0 32 ............................. CCGAGCTGTTCTTCGTCACGGCTGACATGACG 175509 29 96.6 32 .........................T... GACAGGGCTCAGGGCGTCACCGTGCACACCGG 175448 29 89.7 32 ............T..A.........C... CGGGAGGGCACGCAGACCAACCTGTGGGCAGA 175387 29 89.7 32 ............T.......A....T... GCTATCCGCCGCATCCGTGATCCCGACGCCGC 175326 29 93.1 32 ............T............T... AACTTCGAGCCGTCGGCGATGCGGCCGTACTG 175265 29 86.2 31 ...T........T...........TA... GCGGCGATGGCACGATGGATATCGCTGTGGG 175205 29 89.7 0 ...........T.....A...T....... | A [175182] ========== ====== ====== ====== ============================= ================================ ================== 12 29 95.1 32 GTCCGCTCCGCGCAGGCGGAGATGCGCCG # Left flank : CCGGCGGAGATGCTCCACAGCGCTACCTCAAGCCGGGCCTGTTCCAGGATTCTGCTCCGCATACGCGGAGATGTTCCGGTCGGGGACGAAAGCGGCCCCATCGTCGGGTAGGGCGCTCCGCGTACGCGGAGATGCTCCATCCGAGACCTGGGTCGCCCCCAGTCACGACCGGTGTCCTTCGCGTCTGCGGAAATGATCCGGAGGCTCGGTCCAACAGCAGGGGCATAGCCATGCCAGCTCCGCGCGTGCGGAGAGTTTTACCTGCCCTCCGCCCTCGCGGACGGCATCAAACACGAGCTATCCCGCAGCCTCCTCCCAGACCCCCACAGTCCTACCGGCCACCACTGACACCCCGCCCCGAAGGCACCACCCGTGCCAACCGCCCGGCAAACAGCGCTACCGTGAACAAGCCAGCCGATGCCACACAGCACCCGGCACAGACCCACACGCACCTTGATAACGAAAGAGCAAAGACCCCACAAAAGCGCAGGCCCCAAAGG # Right flank : ACAGACCTGTCCACCCCGCTTCCAGAGGGGCAGCGCCTTGGGTGGCACGCAACTACATCATCAGCGTGGGTACCCCCGTGGAGCGGCTGCTCAGACGCCTCCGGTGACCACCCAGCTCTGGGATTTTTCAGGGACTTTCAGCTCTGCCAGAGGGACTTTCGAGGGACTTTCGGCTGCCCAAAGCGGCAAGCGCGTGAAAGGCCGGAAAGAGCCTCCGATGCAGGTCAGAGGCCCTTTCCGGGATGAAGTCCCAGGTGGGGCGGAAGAGACCGGCCTATACGCCGGGAACAGGCCAACACCCCACCGACATCACGTCTCCATGGGCACGTCAGGGCCTAAGACACCAGTTCAGCGCATGCTGAAAGCCTGCGGGCCCATGATTAACTGAATGCTGAGCCGACTTCTCCGAGTTCACGCCGCAAGCTGCAGATCTCCCGGCGCAGCGGATTCCCGTTCCACGATCGAGAAGGCTGGGTGCACATAGCTGACAGTCATCCCGG # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGATGCGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.60,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 177730-176238 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081497.1 Streptomyces sp. BHT-5-2 plasmid p1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 177729 28 100.0 33 ............................ GTCACCAGGTTCATTACGGGCGTAGAAGTTGTG 177668 28 100.0 33 ............................ GTGGTGATTGCCAGTACTCAGAGGATCCCTTGA 177607 28 100.0 33 ............................ GCTCCTCACCTCCATGAGGTGATCGATTTGGGC 177546 28 100.0 33 ............................ GGACCACAGCGTCTACGGCGAGACCGCACAGAC 177485 26 89.3 33 ...........--........T...... GGTGTCGGCGGCAATGGGCGGGTTGCGCATCGT 177426 28 92.9 33 ........................TA.. GTACGGGGGCGTGCCGCCGTGCACCGAGACTCG 177365 28 92.9 33 ............A............G.. GCAGCGCGTCCGCGCCGCCCTGATAACGCCCGA 177304 28 96.4 33 ........................T... GCGGGGTCGCAGCATCGGCCTGTCGTTCGTGAC 177243 28 82.1 33 .C.........A..T......G.....T GCGGAATGGGCACGAATCCGCCGAGGCTCGGAT 177182 28 89.3 33 ..............C.....A...T... GGACTCCGGCGTGCTGCTGGAACTCGCGGCGAA 177121 28 89.3 34 T.......................TG.. GTCGACGGTCAACCGGCGCATGATGGTCGGCCCT 177059 28 92.9 33 ........................AG.. AGCCGCCGCAGTGCTGCGGAACATCCGGGTTCG 176998 28 85.7 33 ..T........A............TA.. GTACGGGGGCGTGCCGCCGTGCACCGAGACTCG 176937 28 85.7 33 ...................G....TAT. GAAGTCGATCTCGTCGGCCTCCTCTTCGGAGAA 176876 28 92.9 33 ........................TG.. GTTGTCCATGCCACCCTCCCCAATTCGGCTTCT 176815 28 89.3 33 ...........A............TG.. GGTGGTGCGCCATGTCCTGCGCGGGGGAACCGT 176754 28 89.3 33 .C.............A.........G.. GGTCGGCGCACTGTTCCTCACACGCACCGCCTC 176693 28 75.0 34 ..T.......T.A....A......TGT. GTACGTGCTGGCCGAGCCCGCCCAGCCCGGGCTG 176631 28 85.7 32 ..T.........G...........TG.. GCGCCGTACGTCGCGCGCTTTCTCCAGGCAAA 176571 28 85.7 32 .GT.....................TA.. GGCGGAGAGCGGCGAGACGACGACCGTGTCGT G [176566] 176510 27 75.0 33 AGT...........T........TT-.. GGAACAGAAGGAGAGTGGCGAGGGCGAATGGGC C,C [176486,176507] 176448 28 78.6 33 .CTG...........A........TG.. GCCGTTGGGTTTCTCCAACTGCGTGCTCACCGA 176387 28 96.4 33 .............C.............. ACAGCGCTACCTCAAGCCGGGCCTGTTCCAGGA 176326 28 78.6 33 T..T.......AT.C.........T... GGTCGGGGACGAAAGCGGCCCCATCGTCGGGTA 176265 28 85.7 0 .GG.........T.C............. | ========== ====== ====== ====== ============================ ================================== ================== 25 28 89.1 33 GTCCGCTCCGCGCAGGCGGAGATGCTCC # Left flank : GATCAGCACGCCGCTGCCCATCCAACCCGGCAAAGGGAGGCGTCGCCTTGCCCAGGTCGTGATCAGCCGCCAGCCACGACAAACGCGCCCGCGCCGACTCCCCGCACCCGTCTAGATCATCGGCCAGAAGCCGGCGTACCCGCTCCGCCAAGAGGTGATCCCACAGCCATCCACCTGCATGTCCGCTGTCCCACACATGCGCGATCAGCGAATGCCACGACGCACCAGGAGGTACCTCACGCCCCCACCCCTTACGCCATGTCTTCGCCCACAACAGCCGCCCCAACTCCGAAACCACCAACGCCAGCCTCCTCCCAGACTCCCCACAGTCCTACCGGCCACCACTGACACCCCGCCCCCGAAGCCACCACCCGCGACAACCGCCCGGCAAACAGCGCTACCGTGAACAAGCCAGCCGACGCCACACAGCACCGGCACCGCACCACACGCACCTTGATAACGAAATAGCAAAGACCCCACAAAAGCGCAGGCCGCGAAGG # Right flank : ATCCGAGACCTGGGTCGCCCCCAGTCACGACCGGTGTCCTTCGCGTCTGCGGAAATGATCCGGAGGCTCGGTCCAACAGCAGGGGCATAGCCATGCCAGCTCCGCGCGTGCGGAGAGTTTTACCTGCCCTCCGCCCTCGCGGACGGCATCAAACACGAGCTATCCCGCAGCCTCCTCCCAGACCCCCACAGTCCTACCGGCCACCACTGACACCCCGCCCCGAAGGCACCACCCGTGCCAACCGCCCGGCAAACAGCGCTACCGTGAACAAGCCAGCCGATGCCACACAGCACCCGGCACAGACCCACACGCACCTTGATAACGAAAGAGCAAAGACCCCACAAAAGCGCAGGCCCCAAAGGGTCCGCTCCGCGCAGGCGGAGATGCGCCGGTCCTCGCGCAGCATCGCGTCGATGAAGCCCTGTCCGCTCCGCGCAGGCGGAGATGCGCCGACCACCGGGTGTTCGCCAGTACCGTGCTGGGGGTCCGCTCCGCGCAGG # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 185896-188606 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081497.1 Streptomyces sp. BHT-5-2 plasmid p1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 185896 29 100.0 32 ............................. CTTGGTGACGGCCGCGTCGAGTAGGCGCTGGT 185957 29 100.0 32 ............................. TCGCGGTGCGGGGTGTTGCCGTGTAGCAGTCC 186018 29 100.0 32 ............................. TCTCGCAGGGAATGGAACGCTGGGGAACCTGT 186079 29 100.0 32 ............................. AAAAATTGAAGCCGCCGAAGTCGTCTGGCTCG 186140 29 100.0 32 ............................. GTCCACGGTGCAGTCGCACGCCCGCCGTCTCG 186201 29 100.0 32 ............................. TCGAGGATCAGCCCCTTGTAGGGCATGCTGTT 186262 29 100.0 32 ............................. CGGAAGGTTGTCCATCAAACCGGGGCAATTTC 186323 29 100.0 32 ............................. TACCACTCCTCGGCGCCGCACCCGCGGATCCC 186384 29 100.0 32 ............................. CAATGACAAATTCGAACGAAGAGGCTGACGTC 186445 29 100.0 32 ............................. ACGCTGGTGTCAACGCCGGGAGTGGTGACGGT 186506 29 100.0 32 ............................. GCCGGCGGCTGGGATTTGCTCGGGTTCGAGTG 186567 29 100.0 32 ............................. ACCTGGCGACGGCCGCAGTCCACCTCATTGAG 186628 29 100.0 32 ............................. GTCCACCGGCTGGAGGAATTGCTGCTGAAGGC 186689 29 96.6 32 ............................A TCACTCGTGGTAACAGCCGAGCCCCCGACATG 186750 29 79.3 32 .......T.A....T.T.......TG... TTCGAGGTGCGAATCATGGGAATGACGCAGAT 186811 29 89.7 32 ...........TC........G....... AAGGAACGGGGCGCGCTGATCACGCACCTAGT 186872 29 93.1 32 T.............T.............. CCGATTGCTATCTGGTCACCAGGTTGTATCGG 186933 29 86.2 32 .......T.............G....T.T TCCTTGGGGTCGGAGAACCAGAGGATGACGTC 186994 29 96.6 32 ............................C GGGTCCCGGGTGAGGATGCGGAGTTTGACCGC 187055 29 93.1 32 ...T............T............ GAATGGCCCGAGGACCACGGCGACTGACCAAC 187116 29 93.1 32 .G........T.................. TCCTCCAGACCGATCACTCTGAGGAACTGGCC 187177 29 93.1 32 ...T............T............ ACAATGAGCTGGCCGGGCTGGAGATCGCCTGT 187238 29 89.7 32 .......T.....GT.............. GCGAACAGGACACCGTTCATTGTGCCGGTGAA 187299 29 96.6 32 ..........................T.. GGCATCCTCTACGACTGCCGTGAGGCTGAACG 187360 29 96.6 31 .............A............... CCGAGTTCCACGAACGTGTTGCCACTGGGTC 187420 29 93.1 32 ...T...........A............. GTCATCCGCGGGGTATCGGAGGGCGCGATCAC 187481 29 89.7 32 .C.......................A..A TCGACCGGTGACCCACGCCGTGTGTTCCTTGG 187542 29 93.1 32 ...T.........T............... AAGGTGTTCGGCATCAGCCACACGACGCGCTG 187603 29 86.2 32 ...T.......C.A............T.. TCCATGCGTTCGGCGAGTTCGATGGCTATGGA 187664 29 89.7 32 ...T....T.................T.. ACGATGTAGTCCACTGCCTGCTCAGGGCGGAG 187725 29 100.0 32 ............................. CGGTTGAGCGCTCAGCTCCTCTTGTCCAAGAA 187786 29 93.1 32 ..........T...T.............. ACGGGTCCGGGCTCGTACTCGGCGCCGCCGAC 187847 29 96.6 32 ...........A................. GCGACGCAGACGGCCCGGGGGTAGTGCGGCTG 187908 29 89.7 32 .............A..........TG... CGGTCCGATCAGCCGGTCCTCATGCGGGTCAG 187969 29 82.8 32 ............CAG.........TG... ACGATGTCGGCGGTGGGCACGGGTCCGCGTCC 188030 29 79.3 32 ............CAG......G..TG... GCGCCGGCGACGTCGTCTCGTGTGCGGGTGAC 188091 29 79.3 32 ........T...CAG.........TG... TCGACGCTCGCCATGGACTTCGTTCGCACCGT 188152 29 89.7 32 ...T........CA............... TACAGCTGGTGCACCAACGGAAATCACTGGCT 188213 29 100.0 32 ............................. GCCCAGGGCAGCCGGACGACGATTTGTGCGGC 188274 29 96.6 32 ................T............ GACGGCTCCTCCGGGAACGCGGGAGTCGGCGG 188335 29 96.6 32 .............T............... GCAAAGTACGTGCTGCGGGCGGTGGAGGCGGG 188396 29 86.2 32 ...T......T...T.........T.... GCGATGTGGAGCCTCGTCGCCGACACAAAGCG 188457 29 82.8 32 ............C...T.....G.T..G. GAACAACAAGGGCGGCTGCGCCGACTGGCGTT 188518 29 86.2 32 .......AT.......T.........T.. CCCCGGCCTTCGGTAGGGTCCCGGAGTGTGCG 188579 28 79.3 0 ...T......T..T..........-..TA | ========== ====== ====== ====== ============================= ================================ ================== 45 29 93.2 32 GTCCGCTCCGCGTCCGCGGAGATGCTCCG # Left flank : GGAAAGCAAGCCCTACACCCCACTCCTGGACCGCATCGAAACAGGACAGCGCTACGCCTTCCGCCTCACCGCATCCCCCACCTACCGCACAGCCGCCCCCTCACCCGACCAACGAGGCCGCCGCCTCCCCCACACCACCGCACGCCACCAACTGCGCTGGCTCGTCGACAAAGCACCCAAACACGGCTTCACCATCTCCCCGGCCGGCACACCTAACGACATCGGACCTGACGGCGAAATCCCCCTCCAGCTCCAGCTCCGCCACCGCGGCAAGAACACCTTCGGCAAACACGACCACAACAACAAACCCATCCGCGTCGCCCTCACCACCGCCACCTACGAAGGAGCACTCGACGTCACCGACCCCAACGCCCTCCGCACCCTCCTCACCACCGGCATCGGCCAAGGCCGCGCCTACGGCTGCGGACTCCTCACCCTCGCCCGCCTCCCGGCACGGTAAAGAACCCGCAAACCATGTGGAACGTTGCAGGTCACGAAGA # Right flank : AAACCAAGAGAGATCGACCTGTTTGAGCGGATTCCACATGCCTCCGGCATCGTCCGCAGAAGGACGTGTCATGACCAGCGCGACCCCCGTACCCCCGCCGCCACACGAGGACTTCTGGGAGGAGCACCGGACCTGTTTCCTTACGACAACACGCCCCAATGGCACTCCGCACCTTGTCCCCGTGGGGGTGACCTACGACCCGGCAACCCGCATTGCCCGCGTTATCAGCAGTGGCACGAGCAAGAAGGTCCGCAATATCCGCGCCGCCGGCCAAGGGGCCCGCGTCGCGGTCAGTCAGGCCGAGGGCCGACGTTGGTGCACCCTCGAAGGCACCGCGATTGTCAAAGATGATCCAGAGTCTGTAGCCGACGCCGAAGCGCGCTACGCCCAGCGGTACAAGACCCCGCGCCCCAATCCCGAGCGAGTCGTCATCGAGATCACCGTTACCCACGCCATGGGTACTGCCAAGCCTCCTGGCTGGTAACTCCGAGAGGTTGGCG # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGTCCGCGGAGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCACGCGGAGATGTTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-50] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2272188-2275426 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081497.1 Streptomyces sp. BHT-5-2 plasmid p1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================================ ================== 2272188 36 50.0 35 CC..CTCGTCGGCTGAC.......CA...A...... ACTTGCCGTATCGGCAACGACCGCACCGTCTCACG 2272259 36 72.2 39 ......CC.CT.GT.A...T.G...A.......... CGCCCCGTCCTGGGCAAGCCGGTGCCCATGGGACGGGAG 2272334 36 86.1 40 .C.....CAC.....A.................... GCATGCATATTGGAATCGGCCCGGGTCTGCGTTCCGATGG 2272410 36 88.9 37 .......C....G...A....G.............. AGCTTGACGATGTTGTCGACGGGGAGCGGACTGGGCG 2272483 36 91.7 37 .......C....G..A.................... GGCCTGGCGCTGCGCCGCTACTGGGAGGCCCAGCACG 2272556 36 86.1 61 ......AC.......A..A......A.......... GCTCTTCGCTGAGCCTCACGCAACCGCTCTGCCGCGGACATCCTTACCCTGCAGCCGGTAG 2272654 36 88.9 38 .......C..T..T..............T....... TGGACTGAGGGCCACGAGGTGGGGAAGGCGTTCGACAG 2272728 36 91.7 37 ....A..C.................A.......... ATGGCGGCGATGCCGATCGGTGCGGCCTGGGTCATCG 2272801 35 91.7 38 .........GT.......-................. TATCTGAACAAAATTCAGGAAGACGCTGACGGCTGGAG 2272874 36 83.3 37 .......CA.....TA........A.........G. TCGTGCACCGTGCACCGGTCGTGCCGTCCTCGGCACG 2272947 36 100.0 41 .................................... GACCAGATCGCGCCGAGCCTGCAATCGGCGTTCGCCGCGAG 2273024 36 77.8 37 .......C..........CGAC.AA...G....... GGCGACGGGTTGCCCAGTGGCAACATGATCGTCATGG 2273098 36 88.9 36 .......C.......A.A...G.............. GGTGGCTCACTCCGCGAGATCAACGCCGGAGCCCTG 2273170 35 86.1 39 .......C.C........-..G...A.......... GAATGGCCATATGACCACCTCGTCGGTCACAGCGTCATG 2273244 35 77.8 38 .......C....C.T..A-T.G...A.......... ACACATCGCTTACGCGCTTGCTCAGCACGACAAGTGGG 2273318 36 75.0 82 .......C.C...T.C....AG.T.A.........G GATCTGTCCGCCGCGCTGCATGACGTCTTGCTTATGTGCCGGTCGCCCTCCGCCTATGGCACCTTCGAGCGCGAATGCGACG 2273436 36 86.1 36 .....T.........C.....GT..A.......... GTTAACCACATCGCAGTCGACGAGCGGATCAAGTCG 2273508 36 80.6 36 ....A..CAC.........A...T.A.......... CGCCTAACCGCCCTCAGGTGGCCCGGATCCGGGCAG 2273580 36 86.1 36 .......C.C.............T...A....T... GTGCACTCAGGGGAGGCCCAGAAATGTCGGTGACAG A,A [2273593,2273603] 2273655 36 83.3 37 .......C.C.T.......T.G...G.......... CGCTTCGCGCTCTTCCACACGATGACAGCGACGATGG 2273728 36 91.7 39 .......C.CT......................... TGGACGCAGCTGCTCGCTCGCCTCAGCGTCCCCAGCGCG 2273803 35 77.8 36 ..CT...C.C...T....-..G........A..... GGCATCCTCGCCGCCTGTAGGGTCGAGGCCGACCTG 2273874 36 77.8 33 ....A.CC....C.G.A....T...........G.. TCGATGTCGCTCCCGCGGAAGGCCAGGGTAGCC C [2273892] 2273946 36 83.3 35 ....T....C...........GT..A......T... CGCTTGGTGGTCGAGCTGTTTTCGGCCCTCAAGGG 2274017 36 88.9 41 .......C.......A.........C.A........ TCCGACAACTGGTGTTCTACTGTCCCCGATGCCACTCGGGG 2274094 34 83.3 38 A........C..--.......G...G.......... GACGACGTCATGGCTTCCGCCTCGCGGCTTCTGAGCCG 2274166 34 69.4 27 ....A..C.C..C.--....AGAT.A.......... GTCGCTGGCCGAGCGTCTCGCCTGCCG Deletion [2274227] 2274228 36 80.6 34 .......C...GC.T...AT..........A..... CAGCCGTAGACGATGGCGGTGAAGGTGAGGCAGC 2274299 36 69.4 39 CCA...CA..G.C.......AG...A..G....... TCAAACGGCTTGAGGTAGCGCAGCGTCAGCTTATCGGTG T [2274314] 2274375 36 88.9 38 .......C..........A......C...C...... CGAATCGGGGTGCGGCGTATGTCCAAGATGACTTTGGG 2274449 36 83.3 41 .......C.C..C.A......G...A.......... CGGGCCCGAGGCGCTACTACCCTCGATGCGCTGGCATACCG 2274527 36 80.6 37 .......C.C.....AA....G...A.A........ ATCTCCCGAGGGTGCGGGAACGTTGGTAGCCGACGCA 2274600 36 77.8 37 .T.....C....C.....AT.G...A.........T GCGCAACTCCGTGAACACGCGGAGGCGCACGGCCACG 2274673 36 83.3 34 .......C....C........G...A....T....G ATCGCTTGGGGTCGTGGGGGAGGTTGTGACCAGG 2274743 36 86.1 33 ...T...C.....T...A......A........... GCCACAGCTTTGAGCCGCAGCACCAGGACCAAG 2274812 36 77.8 37 AT.T...G.........A..........GA....G. TTCGCCCCGCCCTTGTTGTTGGCGATCGCGGCACGTG GT [2274824] 2274887 35 80.6 108 ....A..C.-.....A..A..G.......C...... AGCGATTCCTAGTCGGATGCCCACCAGGCAGGTGGGTAGCGGTCACCTCCCAGGCTGCCGTGGGTCGCAACTGCAAGGGACAAGCAGCCAAGGTGCTCGCCGCGCTCG 2275030 36 66.7 37 .......CAC..CT...A...C.T.A..G..A.C.. GTCGAGAGCGGGGACCTGGTCGTGAAGTTCGCCCTCG 2275103 36 77.8 33 .......CAC......T....G..AG.A........ GGATCGGGTCGAAAGACCGGCCACTCGCACCGG 2275172 35 80.6 36 .......CT...C....A-..G........T..... TTCGCCATCGGGCTGATCACCCGCCCGCTTGGCAAG 2275243 36 69.4 37 ....AC.C.CTT......A.AG...A.........T GTCCCTCGCGTGCACACCGCCCAGGGCACGGTGCGGG 2275316 36 88.9 39 .......C.C........A......G.......... AGCGACAACATGCTGTCACCTGAGGGGCGCACGATCATG 2275391 36 83.3 0 .......C.....T.....T.G...G.........G | ========== ====== ====== ====== ==================================== ============================================================================================================ ================== 43 36 81.9 40 TGGCGGTTGTCCTCCGGGGCGACCGTGGATCGCAAC # Left flank : TCCGTCGGTGACCAGAAGAAGCACGCCGGAAAGGCCCGCGGCCCCATGCAGCTCACCTTCTCCCGCTCCATCGACCCCATCACCCCCCTCGAGGCCGGCATCACCCGCGTCGCCCCGAACAAGCCCGAAGACCTCGCCAACGGCAAGGTCACCGAAATGGGCAACAAACACTACGTCCCCTACGGCCTCTACCGCGGCCACGGCTTCTACTCCGGAGCCCTCGGCACCAAGGCACACGTCACCTCGGAAGACCTGGCCGCCTACTGGCAAGCCATGACCATGATGTTCGACCACGACCGAGCCGCCTCCCGAGGCGAAATGGCCATCCGCGGCCTGTACATCTTCTCCCACGACAACTCGTACGGGCGGGCACCCGCCCACAAACTCTTCGACCGGATCCGCATCAAGCCACTGGGCCACAGCGAAGCACGATCCTGGGACGACTACGCCGACCAGATCGACATCGACGAAGACACCATGTCCGAAGGCGTGGCCCTCAC # Right flank : GAGTCCAGGCCCAGGCCGGAGAACGCTGCCGCCCAAGTGGCGGTCCCCCCGGGGGCCGGGGATCGTAATAAGGGCATCTGGTGGATCGTTGGCCGGTTGGCAGCCGCCCTCCGCCGCCGCTGGGGACAGCCCAACCCAGCGGCTGAAGATTGCAATGCCGTGCTCGGTGGACGAGAATACGTAGGACACATGGCAGTGGCGGTTGCCCCTGAGCCGGCCGAAGATCACAACCCTTGCATTGCCGAGTACTGGTTCGGCGCTGGCCTGGTGGCGGTCGCTCTCGGGGCGGGCAGGGGATCGCACCGCCTGATGCTGTCTCCTCCATAGCTGCGCTCGCGTGCGCGTGGGGTCGCCTGTCAGCGTGCGAGCCGAAGTGGCTCTGGCAAGATTTTCGTAGCCGGAGATCATCTCGGTGACACGGTGGGCCGGTCCGCATAGCGGGCAGCCTGTGGCTGTGCTCTGTTGAACTGGCAAGCCTGTTACCGCAGTTGGTCAATGTG # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.10, 5:-1.5, 6:0.25, 7:-0.25, 8:1, 9:0.05, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCGGTTGTCCTCCGGGGCGACCGTGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [49-74] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //