Array 1 1695392-1696677 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SEZX01000001.1 Staphylococcus pseudintermedius strain 53_58 Scaffold_1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1695392	    36	  97.2	    30	............................G.......	AGCACCTACGCGTGATGTGACTTTTCCGTA	
   1695458	    36	  97.2	    29	............................G.......	GATAACTTGTTAAAGACAGTGCTTGACGC 	
   1695523	    36	  97.2	    29	............................G.......	CAAGCGAACGCTTTACAGTGAGCGCGTTC 	
   1695588	    36	  97.2	    30	............................G.......	GTAGTACATGTGTTGCCCAATTAGTAAGTT	
   1695654	    36	  97.2	    30	............................G.......	ACAAGAAAGCACAGATTATCAACTTATTGC	
   1695720	    36	  97.2	    29	............................G.......	GAAAAACCGGACTTGCACTTAATACGATG 	
   1695785	    36	  97.2	    29	............................G.......	CAGAATCGAAAAGGCAAAATGTTAGCGAA 	
   1695850	    36	  97.2	    30	............................G.......	GGTATCCAATATTTGCGCCTACAACATTAT	
   1695916	    36	  97.2	    30	............................G.......	GGTATCCAATATTTGCGCCTACAACATTAT	
   1695982	    36	 100.0	    30	....................................	CTTAAACGCTGCTCTCCAGCTCCCCATAAT	
   1696048	    36	 100.0	    30	....................................	CAAACAATCCCTCATGCTACATGGCTCATT	
   1696114	    36	 100.0	    30	....................................	CGCTGAGTTGAAAGCAACGTTAGAAAATGC	
   1696180	    36	 100.0	    30	....................................	TGTAAAATCTTCTTTAATTCCTTTGGTAAT	
   1696246	    36	 100.0	    30	....................................	ATTTATGCCGCTGTTTCAATGGGTGTCTGA	
   1696312	    36	 100.0	    30	....................................	ACAATACTTGATGCAGGCAATAACAAGCTG	
   1696378	    36	 100.0	    29	....................................	GCTAAAAGTCAATGTTACTTCATTCCTTA 	
   1696443	    36	 100.0	    30	....................................	AATGCACGTGCTGTTATGGTGAAAGGCTAT	
   1696509	    36	  97.2	    30	...........T........................	CGAAAGTAAAGATAGTATGCAAGGTGCAAG	
   1696575	    36	 100.0	    30	....................................	GTTATGATGTTTGGCGATATGGGTCGTCGT	
   1696641	    36	  86.1	     0	..........................AC.TC.T...	|                             	C [1696674]
==========	======	======	======	====================================	==============================	==================
        20	    36	  97.9	    30	GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGTTATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAATATAAAGAAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGC

# Questionable array : NO	 Score: 5.85
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC
# Alternate repeat :   GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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