Array 1 180543-182035 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOP01000004.1 Salmonella enterica strain BCW_1542 NODE_4_length_209650_cov_3.46802, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180543 29 100.0 32 ............................. CAACGCCCTGACATTCTCACGCCCGCGCGAAA 180604 29 100.0 32 ............................. GGACTTCCCACTCAAAAACAATTCCTACGTTA 180665 29 100.0 32 ............................. TTAGCGGGTTAGGGTATCTCACAGGGAGAATG 180726 29 100.0 32 ............................. AGCAGTGGAAAGTTGAGGGATTTCAGCCCTAT 180787 29 100.0 32 ............................. CATTCAACCAGTTTGGTGGAGCGTTGAAGTTG 180848 29 100.0 32 ............................. AGTGCATCGAGGCGACCAGCGCGGTGCTGACA 180909 29 100.0 32 ............................. CGGGCCGCACTGGCGGCCCATAGGTATTACGC 180970 29 100.0 32 ............................. TGATTTTATAAAATTCTGTAAACGCAGTTGGC 181031 29 100.0 32 ............................. GCGACCTAAGCCGCGCTCAGTTGCTTAGCCAT 181092 29 100.0 32 ............................. CGGTCGCCATTTGTGGGCAAGATTTTGCGGTA 181153 29 100.0 32 ............................. GGCAAAAATCCTATTTTGGAATTGCCAACAGG 181214 29 100.0 32 ............................. CTACGGCGAAAATCGCCCATTAAACCACGACC 181275 29 100.0 32 ............................. GATGTAGCTGAACTTCTGGAGGTGCTGAAATC 181336 29 100.0 32 ............................. CATCCAATGTCCAGACACCCCAAATCACTGTA 181397 29 100.0 32 ............................. GTGGTGAGAGATTGTCGTCTGATGTTGTGGCT 181458 29 100.0 32 ............................. CGCCCGAAATTGCCGGATAATGCTTCATGTGA 181519 29 96.6 32 ............................A GTAACGCGCCTTACTTCTGAACGTGATAAATA 181580 29 100.0 32 ............................. CCACCCACCAGCCCAGCGCCAAAACCGCCACC 181641 29 100.0 32 ............................. GAATGCTTAAAACGCCGGATGATTTAACCGGA 181702 29 100.0 32 ............................. AACAACCAGTAACAGCAGTACAGAGAACGCCC 181763 29 100.0 32 ............................. AAACTATTTCTGGAATGCAGGAAAAAGACCCG 181824 29 100.0 32 ............................. AGACAGAAAAGACCCAAGAAAAAAACATGGAA 181885 29 100.0 32 ............................. GATCTGTCCGGTATGGTTATTGTCTGCGGATA 181946 29 93.1 32 ................T...........A GAATGGCGCTAGTTCGTCATATCAATGTGAAT 182007 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCACCGGAGTAGCTGACAATGAGTATGTTAGTTGTTGTTACAGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGGTATGGCAGCAGATCTCTATTCTGGCAGAGGGAGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGGTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGACTTTGGTATGCTAAAAAAAGCCTTTTAATTCAGTTGTGTATATTTAGA # Right flank : TTTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCACCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //