Array 1 156988-155366 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYU01000003.1 Bartonella apis strain PEB0122 NODE_3_len_513774_cov_100_305_ID_5.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 156987 36 88.9 28 A.G.............................G..T ATTGCCTGTTAATTTATTGACACTTTTA C,C [156979,156981] 156921 36 83.3 30 .....................T.........GTGTT CAGGCTGCAATATTGGCTTTATTGACCATG 156855 36 75.0 30 C....A..C...T.A.G....A...G...A...... GAGCAAAGCGCGAGGAAAAGCAAAACGAAA G,T [156828,156831] 156787 36 100.0 30 .................................... CAAGCGGGCTTTTTTATTGGAATGTGTTAT 156721 36 100.0 31 .................................... CACAACCGGTAACGATCAAACAAGAGAACAT 156654 36 100.0 30 .................................... CAGCGAGATGAAAATCCGCCAGCGGGTTAA 156588 36 100.0 29 .................................... ACACCTGAAGGTGCTTTTCGCGGCAACAT 156523 36 100.0 30 .................................... CTTCATTCTTGCGTATGATGTAATGAATAA 156457 36 100.0 30 .................................... GGTCTTCCGGATGAATGCACCGCCGAAGCT 156391 36 100.0 29 .................................... CCTTCGATAAAAACCTTCGCGCCTTTCTT 156326 36 100.0 30 .................................... CGGTTAGGCTTGTGGCATTTGGTGAAGACT 156260 36 100.0 30 .................................... ACAAGCCAGAAGTGAGTACGATTTAACAGG 156194 36 100.0 29 .................................... TCTTTTAAAAACCTTGTCCAGTTGTCCAG 156129 36 100.0 29 .................................... TCTTTTAAAAACCTTGTCCAGTTGTCCAG 156064 36 100.0 31 .................................... AAAATGGGTATCCAAGGAACTGGAGATGTTT 155997 36 100.0 30 .................................... ACGCGAATAATCAACCTCGCCCATTGGCAT 155931 36 100.0 30 .................................... CCCCGTTGAGATCGGTGACGTTACAGATGA 155865 36 100.0 30 .................................... ATTTCTCGACATGCAAAAGCCGCCAAGCTA 155799 36 100.0 30 .................................... GGCGGGGAAAGACGATGCGCTGCTTTTGCA 155733 36 100.0 30 .................................... GCTGACGCGAGCGGATGGCCGCGCCACTTT 155667 36 100.0 30 .................................... TGACGCGGGGAACGAATAGCTTGACTTCCT 155601 36 100.0 30 .................................... TCGCCGGAAGTTCAAGACCTAGCGAAACAA 155535 36 100.0 31 .................................... AGGTCGTTTTGACGACGGCGCATCTAAATCA 155468 36 100.0 31 .................................... ATGTGATTGAGGCGGTATTCTTTACCGTTTT 155401 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 97.9 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : ACAAATGTAGACACACTACGCCTTTGGCCGATTTATGCAGAAGTTTTCTTCACTTGTCAATCGACCAGCTTTAAAAAACCGGAAAGCTTTTTGTGAATTAGCCGGCAATCATGGCGAAAAACCGGATGCACTTGACAACAAACATTTTTTGTCGGGTAAACAGCAATAGGCCTGAACAACTCTGATGCTTTTTAAAAAATCGCGCCCGTGGCCCCGCGCAAAAATGAACAAAACAAAGTTGAAAGGGTGAACGGAATTTTCCAAAAATTAAAAAAAGGGGCTTGTGTCAAAGCTAATTGCCAGCTATTTAGCCGCTAACGCGCTCGGATATTTGTTTATCAAATAAAGTTCGCCTTTTATGGAGAGGTGGCTGAGTGGTTGAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCCCTCTCCGCCATCGTTTTCCTTTTCTTTGAAACGACTTCTTTAGTTATGCGCCCGCTTGGA # Right flank : TGATGTCCACTTAACCCTTTGTTTTATAAGGATTAAGTGGATATTTTTTTAAAAAAAATGTTGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCTTGATCGGAAAATCTTACAATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTTCCTCGTTCAGGCAATGAGGATTCGATCTTCCTGACATAAGATTCGAATTGTTCTTTTCCGTTACAGAAACGCAGATAGTTCGAGAACTCGCTCATCTCAAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTGTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTTATCTTCTCCCCATGCCTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAATTGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 160277-159778 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYU01000003.1 Bartonella apis strain PEB0122 NODE_3_len_513774_cov_100_305_ID_5.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 160276 36 91.7 30 ..C..AA............................. ACATGTCTCGGGTGACAAGCGCGCGCGTCA 160210 36 100.0 30 .................................... TATTTGCGGTCGAATAGAAGCAGACACAAG 160144 36 100.0 30 .................................... AACGGGGCGCAAATTATATAACGCACAAGT 160078 36 97.2 30 ............................A....... TCTTGATGATACTGACCGGCGAGGCTGGTG 160012 36 100.0 31 .................................... CTAAACATTTTTTCAACACTTCGGGCAGCGA 159945 36 100.0 30 .................................... TCGTCGCAAGCCATATAAGCCACCGTGTCA 159879 36 100.0 30 .................................... CATGATGAATGCGGTGAGTGGAAGCCCACG 159813 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 98.6 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : ACGTGCTTCCAAGCTTTTCCGTAAAAATCCAACCATTTTCAAATGGCTTGCCAATTCAGAAAGGTGGTTAGTCTCTCACCGCTTGAAACACCTTCTAAATTAGCATTTGCTAACAACTAATAACCTATAATCAGTCCTTATCGTCTCTGCTGTCCCGGAAGTCACTCACATGCCCCATGAAATCGGGAGATTGACGATGATGAGCGAGCATCAAGGCAAAAAACGTATAATCGACATTCGATAGAGAAGAAACCTGCCGCAAGCCATTACAATTCACAACGTATAAAACGCACAAATCACGGTAAAGATAAGCAAAAGAAGTATATCACAGAATGGGAATTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCGTTCCTTACTCGGCGCACACCCAATATAACAAAACGAGAGAAACAAATCAACGAATAACGTAATTAACAAAGTAAATATCAAGTATAACAAGGTTTTAGCGGCTTTCC # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAATTTTCGATTTTTTTTGACGTATCTTCCAAGCTTTTCCTGAAAATCTAATCATATTTTCACATAAGCACACGATCAATTTGCTTATCCTTTAAGGCAAAAAAATATCGAAATTTCATCGTTCGGGCAACGTAGTTGCGATCTTACCAACACAGGATCAGCCGGCATGGCCGGGCTTTTTTTAGAAAGACCTCAAGCAATTTAGTGAACCGCTGTTTCGATTTTTTAAGAAAGCTTTCCGTTGTTAAAATGCTGGTGAATGCGCCGTGCTACCTAACAAGCAGCCCGCTTTGATAAAGCAGACTTTAAGACAGCATGATAAACCTTAAGACAGCGAGTTAAACCGGTTTGTCGCATCCGGTTTGCTTTCGTCAATTTTTAAGAGTGGCTAAAACCGAACGAGCCTGGCCCACT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 161179-160877 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYU01000003.1 Bartonella apis strain PEB0122 NODE_3_len_513774_cov_100_305_ID_5.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 161178 36 100.0 30 .................................... CCTGCTTATTCAAAGCAAAAGCCAAAGCGA 161112 36 100.0 31 .................................... TAAGCATCAATAACCGCCGCCGGTATGTCTT 161045 36 100.0 30 .................................... CATCATTGATATTGCTTGTAGTCATCGGGG 160979 36 100.0 31 .................................... GACACCGGATATGCTCACGATTATGATTTTG 160912 36 97.2 0 .....T.............................. | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 99.4 31 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TGACCGCATTTTCTAATCTGTTACAACCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACTTGTCGTCCACGTTTTCTCTAAAAATCTAACAATATTTTCACATAAGCAAAATCTAACAATATTTTCACATAAGCACATGAACAATTTGCTTGTCCCACCCTTGAAAAAATATCGAACTTTCATCATTCGGTATAACGACTTTACAGCAAATTTACATCAAACATTGCCGGAAAATTTGAGAAAGCAAAAAAGGAAAAACGGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGTAATTGAAAAATAAAATCAACAAACAGCATCATGAAGGAAGTAAAGATTTAGTATAACGACGTTTTACCAACGTTCT # Right flank : CGATGTGCGCTTAACCCTTTGTTTTATAAGGTTTAAGTGGATTTTTTTAAAAAAAGCCGTTTTTCATTAAACTAACACCGGTAATTTTCGATTTTTTTTGACGTGCTTCCAAGCTTTTCCGTAAAAATCCAACCATTTTCAAATGGCTTGCCAATTCAGAAAGGTGGTTAGTCTCTCACCGCTTGAAACACCTTCTAAATTAGCATTTGCTAACAACTAATAACCTATAATCAGTCCTTATCGTCTCTGCTGTCCCGGAAGTCACTCACATGCCCCATGAAATCGGGAGATTGACGATGATGAGCGAGCATCAAGGCAAAAAACGTATAATCGACATTCGATAGAGAAGAAACCTGCCGCAAGCCATTACAATTCACAACGTATAAAACGCACAAATCACGGTAAAGATAAGCAAAAGAAGTATATCACAGAATGGGAATTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCGTTCCTTA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 4 163010-161652 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYU01000003.1 Bartonella apis strain PEB0122 NODE_3_len_513774_cov_100_305_ID_5.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 163009 36 91.7 30 C.A................................T TTATGTTGTCGTTTATGAGAACATTTTAAT 162943 36 100.0 30 .................................... CGCGCCTTGAACACTTAGCGTGGGACGGTT 162877 36 97.2 30 .............G...................... GGACTTGTTTGGTGGTGAACAAGCCAAGGA 162811 36 100.0 30 .................................... TACGCCTATCTTTAATTACCCATGCCATTA 162745 36 100.0 30 .................................... TGACGCACGGGCGGGTATTGAGTCCTATAC 162679 36 100.0 30 .................................... AATTCACTACATCTATCTATCTCCATTCTT 162613 36 100.0 31 .................................... TGCCGACATAATGCTGTTCTGGATTATCAAT 162546 36 100.0 31 .................................... AGACGAAGATCGCGAAGGTGAAGACGCGTTT 162479 36 100.0 30 .................................... CCTTCTGCAATCTGCTGGAGCCATCATAAT 162413 36 100.0 30 .................................... TCAAATGCTTTTTGATCGGGTTTAATGACG 162347 36 100.0 30 .................................... AAATGTGCTAGTTTATAAATGTAAACACGT 162281 36 100.0 30 .................................... TATAGTTTAACCAGATCAAGGCCGTTTACG 162215 36 100.0 30 .................................... CAATGCAACGAAAAACCGTGCTTCAAGATC 162149 36 100.0 30 .................................... CGTTATCGAAGTCTTCAAAGGTTATTCGGT 162083 36 100.0 30 .................................... ACGAATAAAAAAGACAATCGCTGCTTGGCA 162017 36 100.0 30 .................................... TATAGGTAGAAAAGTACGTAACCTTGTCTT 161951 36 100.0 30 .................................... ATAAGCTTGAATGTGGTAACGATCAGTTTT 161885 36 100.0 30 .................................... CTTTTTCGTTTTTGTGTTGAAAATGAAATT 161819 36 100.0 30 .................................... AATTCTCGCAATTGATAATCAAGCCGGTAA 161753 36 100.0 30 .................................... CCTGTCATGAGGGTCGACACGAAAACGATA 161687 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.5 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGTGCCAAGGAAGTTTATGCCCGTTTCGGCTTTCGCAAAGTGTTGATGGCGGGGTCTCTCGTCTCGGCAATGTTTACCGCTTCCAATGGCCTGTTTTACCCCACCACACCCTATTTGTTGATGATTATCGTGCTCCTGTCCGGCGGCTTTTTGCGCTCGCTTTTCTTTTCCGGTGTCAATGCCCTTGCCTTTTCCGATATTGCCAAAGAAGACATTAGTCAGGCAACGCCGATTGCCGCCGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCCGGCGCGGTTCTGGAAATTGCCAGCTCCTTTCACAACAATATATTGAAACTTGAAGATTTTCATACGGGCTTTTTCGTCGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCCCGTGATGCAGGCCATGCTTTGAACGAAAAAAGCAAACAATCCGCGGCACAACACTGATGAAACCAAAACATATTCG # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACTTGTCGTCCACGTTTTCTCTAAAAATCTAACAATATTTTCACATAAGCAAAATCTAACAATATTTTCACATAAGCACATGAACAATTTGCTTGTCCCACCCTTGAAAAAATATCGAACTTTCATCATTCGGTATAACGACTTTACAGCAAATTTACATCAAACATTGCCGGAAAATTTGAGAAAGCAAAAAAGGAAAAACGGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGTAATTGAAAAATAAAATCAACAAACAGCATCATGAAGGAAGTAAAGATTTAGTATAACGACGTTTTACCAACGTTCTGTTGCGGCTTGACCGCATTTTCTAATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //