Array 1 230262-231386 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLU01000023.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA32 strain SGSC 2212 SEEHRA32_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 230262 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 230323 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 230384 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 230445 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 230506 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 230567 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 230628 29 100.0 31 ............................. AAAAACAGAAGAACGGCAAGCGGCACCTCAA 230688 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 230749 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 230810 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 230871 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 230932 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 230993 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 231054 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 231115 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 231176 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 231237 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 231298 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 231359 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 247645-249308 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMLU01000023.1 Salmonella enterica subsp. enterica serovar Heidelberg str. SARA32 strain SGSC 2212 SEEHRA32_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 247645 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 247706 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 247767 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 247828 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 247895 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 247956 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 248017 29 96.6 32 .............T............... GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 248078 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 248139 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 248200 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 248261 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 248322 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 248383 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 248444 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 248505 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 248566 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 248627 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 248688 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 248749 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 248852 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 248913 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 248974 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 249035 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 249096 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 249157 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 249218 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 249279 29 96.6 0 A............................ | A [249305] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.4 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //