Array 1 231975-238542 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUXT01000005.1 Moraxella canis strain CCUG 8415A 8415T_ctg_0000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 231975 28 100.0 32 ............................ AAAATTGCGACTGCAGGCCGCGGTGGCATTGC 232035 28 100.0 32 ............................ ATCACGCACCATACGCGCATAATCAAGCTTTT 232095 28 100.0 32 ............................ TAAAAAAAATCCCGAAGGGCGCACTTAGGAGT 232155 28 100.0 32 ............................ CACATTTCCATGTGATGTTACTTGTGCCTGCT 232215 28 100.0 32 ............................ TTTGGAGCGTTGTACTGCTTTAACTGAACAAT 232275 28 100.0 32 ............................ AATTTATCTTTTGTGAGCCAAAGACCGTCCTT 232335 28 100.0 32 ............................ TTGAAAAAAGGCACAGCAACAACCTCACCATC 232395 28 100.0 32 ............................ CTGAGCGCTCGGCGAGCCGATTCACTTCTTTC 232455 28 100.0 32 ............................ CTTTGTTTTACCAATTCAACATACTTTGGATA 232515 28 100.0 32 ............................ ATTAGTAACCATTGATGAGATGATGACATTAA 232575 28 100.0 32 ............................ ATTGGCGCTTGAAGTATGTTCTAAAGCATGTA 232635 28 100.0 32 ............................ TAGTTTGTGAGAAATGAACACAAGCAAGATTA 232695 28 100.0 32 ............................ CTTTTTTGTGTGTAAACAAATTATATTATTGC 232755 28 100.0 32 ............................ ACACACGCACATCATTTCAATAGATTTTATAA 232815 28 100.0 32 ............................ TTGCATTTATCAAAGGTTATACTGCTGTTAAA 232875 28 100.0 32 ............................ GTAACCTTGACGCTCTAATCCATGAGCATGAT 232935 28 100.0 32 ............................ TTGGGTTGATGTCAGTGTGACTGCGCCATTGT 232995 28 100.0 32 ............................ GTTCAGCTCACAATAAGATTGGAAAAGATTTA 233055 28 100.0 32 ............................ GTAACCTTGACGCTCTAATCCATGAGCATGAT 233115 28 100.0 32 ............................ TTGGGTTGATGTCAGTGTGACTGCGCCATTGT 233175 28 100.0 32 ............................ GTTCAGCTCACAATAAGATCGGAAAAGATTTA 233235 28 100.0 32 ............................ TTCAGCAACATCATATTCAGCACTACGGCGAT 233295 28 100.0 32 ............................ TACAACCCCAATCACCATCACAAGGACAAAAT 233355 28 100.0 32 ............................ TTTTGGCGATACGCCAAGCGATACGCCCAAAT 233415 28 100.0 32 ............................ TAGCACCCAGCAACAGATAACAGACATTCGCA 233475 28 100.0 32 ............................ AAAGGCGCTTTGCATAGCTTGTATATATTCGT 233535 28 100.0 32 ............................ AAAGGCGATACCCAACTGACCATCTAAGCCAA 233595 28 100.0 32 ............................ ATGCGTGATGAATTGGGTACTAGGTCACAGGT 233655 28 100.0 32 ............................ TTGCACCTTGATATTAATGGCTGCGTTAAAAT 233715 28 100.0 32 ............................ TCATGGAGGGGAATAAACAATTTGCCATCATA 233775 28 100.0 32 ............................ GTAACAGGTGCGCCATGACCAAATTTTTAAGA 233835 28 100.0 32 ............................ GCCTTTTTCACGCAGTTACAATCCAGCAATAA 233895 28 100.0 32 ............................ AGCATCGAGCCAAAATTATAGTTATAATTAAC 233955 28 100.0 32 ............................ CAAGATTATTGATTGCCGCTTGCTGCATGGTT 234015 28 100.0 32 ............................ TGAAGCATTGGTCAATTCGCAGGCAGGCTACA 234075 28 100.0 32 ............................ TCAAACAAACCCAAATAACCCAATGTTATTGT 234135 28 100.0 32 ............................ TAACTCAGCTCAAAGCGTCACTCAGAGCGCGT 234195 28 100.0 32 ............................ CATAGCATTACCATCAGCAATGGCGCAATTCG 234255 28 100.0 32 ............................ GAGCGTATCAGGGTAGCACTAGCTATAGCGAG 234315 28 100.0 32 ............................ AATGCGTGATCGCATGCTCGTACTCATCGCCC 234375 28 100.0 32 ............................ AGTTAAACCATCATAAGTGATTACTTTCTGAT 234435 28 100.0 32 ............................ ATCTCGATAATCTTTGCCTTGGCGTTGCTGAT 234495 28 100.0 32 ............................ TATGTTTTTGGTTTCTCGACAATTCCAATTCT 234555 28 100.0 32 ............................ ACCATCGCCTCCCAAAACTCACATGCCGTCAT 234615 28 100.0 32 ............................ AGATACTCGCCCGTGTAAGGTCTAATACTCAT 234675 28 100.0 32 ............................ AAGTCGTGCTTAAGCTCAATATAGACTGCCCG 234735 28 100.0 32 ............................ TAAGGGCGCTAAAGACGCTCTGGCGCTGATTA 234795 28 100.0 32 ............................ TGCCTTTTTGCTTTAACAGCATCTCGCCATGA 234855 28 100.0 32 ............................ AAGAGAAATTTTTTGAAAGATTTAGTGAGATT 234915 28 100.0 32 ............................ ACGCTCACGATAGGTAGCTGTACAGTTAGAGA 234975 28 100.0 32 ............................ AGATTTTTTGGGGGTGCTTGACCCAAAAGATG 235035 28 100.0 32 ............................ AAAGTGTTGCAGTTTGCCCGTCTCTACTCGCA 235095 28 100.0 32 ............................ AGTAATAAATATTGCTGCTGCCGATCTTGCGG 235155 28 100.0 32 ............................ TGTGGGTCAAATAGATTAGCTCTGCGCGCTAT 235215 28 100.0 33 ............................ ATCGCTAAATTTTTGTGCTGTTGGCGGTCTTGT 235276 28 100.0 32 ............................ TTGATCTCGGTCATCCATCTTTCAATGCCGTT 235336 28 100.0 32 ............................ AATAAAGCTTCTTGCGTTGTGCTTGTTGAAAT 235396 28 100.0 32 ............................ ATCCCTGCGGATTTTGGCTGTGTGGCTGTGCC 235456 28 100.0 32 ............................ ATCACGGGCTTTGGAAATGGTTCGCCATGCGG 235516 28 100.0 32 ............................ ATGGGAACCATTTGGCTTCTTTTTGCAGTTTT 235576 28 100.0 32 ............................ GCTGTCAATCGTGTTCATGATTTTGATCATAG 235636 28 100.0 32 ............................ AATGAACCTTATTATTATGAGATTGGCGCAAG 235696 28 100.0 32 ............................ ATTGATGACAATGTCAGGCTCTTGCACGCACA 235756 28 100.0 32 ............................ TTGTTTGATTGCTATAATAGATTTGCTTGTTA 235816 28 100.0 32 ............................ AGAATTAAAAAAAGCCGGCGTGTGTAGCAGCT 235876 28 100.0 32 ............................ ATGACATTAAAAAAGGGGCATGAAGCCCCTGT 235936 28 100.0 32 ............................ TCCTCTACACCTAACAGGCGCGCTTGCTCGCC 235996 28 100.0 32 ............................ AGCTCTAGCGTAATAAGTTACCCAATTTGACT 236056 28 100.0 32 ............................ ATCGGCTGCTACTAATGTCGTAGATTTCTTCG 236116 28 100.0 32 ............................ TTGCCAAAAGTCGCCTATGGCAAATGGACGGT 236176 28 100.0 32 ............................ GCTGTGCGCGGCAAAGCGTCACAAGGCTTTCG 236236 28 100.0 32 ............................ TTGCTCTTCAACAAATGCAACCAATTCATCAA 236296 28 100.0 32 ............................ AATATTACACGAGCTTTTTTGTTTTTGCAAGA 236356 28 100.0 32 ............................ AACTATCCCTGAAATACACCACCAAAAATCCC 236416 28 100.0 32 ............................ TGTAAGGTTCACCAACTATCCCTGAAATACAC 236476 28 100.0 32 ............................ TAACAAAGTCGCAGACGGTGTATATCAAGCCA 236536 28 100.0 32 ............................ AGACGCAGCAAATGCGGTGAGTATGTGACAGT 236596 28 100.0 32 ............................ ACTATGCCATACGCATGACATACGATAGCCTC 236656 28 100.0 32 ............................ GTTTTTTCATGCCGCAACTGGCATGGGATAAC 236716 28 100.0 32 ............................ ATATTGTATGGTCGAGAGACGAAAAAGCCCGC 236776 28 100.0 32 ............................ GCTTTGGTGCGTGCAATTTTCTTACCAGCTCT 236836 28 100.0 32 ............................ AAACAGCGCATTTGCGCCTTATTGATGTCAGT 236896 28 100.0 32 ............................ TAATATGTTTAGGGTGCATTAGTTTTTCAATT 236956 28 100.0 32 ............................ ATAGTTTTTTGCTGATTTGTCCAAGGCATCAG 237016 28 100.0 32 ............................ TTTTATCGCCATGCTTAGGGCGGATGAGCCAA 237076 28 100.0 32 ............................ AGCTCTAGCGTAATAATTTACCCAATTTGACT 237136 28 100.0 32 ............................ TTTGGTGCCTTGAATGGCATCGTAAACATTGA 237196 28 100.0 32 ............................ ATTCTCGTTGTGTTCCGCAATCGTCGTGTACT 237256 28 100.0 32 ............................ TTGGGCAGCATTGGGAATATCGCGAGCAACTT 237316 28 100.0 32 ............................ AAAAATACGAACAGTTACGCCAAGAGTATCCC 237376 28 100.0 32 ............................ ATGAAAGCATATCTAGTATTTGTTACATTAGG 237436 28 100.0 32 ............................ TCGCTTTCGAGGGCGATATTGGCGGAATAGGC 237496 28 100.0 32 ............................ TCTTGTATAGCCTCAATCAATCTGTAGAGACT 237556 28 100.0 32 ............................ GATTTGTTCAGGCGTATTGCCTGAAGGTCAGC 237616 28 100.0 32 ............................ TCGTTAATCTCCGCCACAATGTCAGCATCAAT 237676 28 100.0 33 ............................ ATTATAACAGGCTTCATCAGAATGGGGGAACGA 237737 28 100.0 32 ............................ TATAAAAATTTACTTATTGCTAATGCCCGCTT 237797 28 100.0 32 ............................ AACCGCTTAGGTTAGCAAAACTGGGGGAGTTG 237857 28 100.0 32 ............................ CCGTCAATCTTTGCTCCGTCCTTACTGTAAAT 237917 28 100.0 30 ............................ AAAAAGCCCTAGAATTGATGGTGTCGAATC 237975 28 100.0 32 ............................ ATCCGTCAATTTTTTTCTATCAGATCTATCAA 238035 28 100.0 32 ............................ TAAGCTGCTTTGCTGCCTCAACCCTGCCATGA 238095 28 100.0 33 ............................ ACACAGGTGGCAGCATGAACGATCGCGATTATA 238156 28 100.0 32 ............................ ATGTTTTGTCTCCTTAAGTTAATCCGTGATTG 238216 28 100.0 32 ............................ CTGAAGGCATGGTTGGTATTGTGCTGCAAACG 238276 28 100.0 32 ............................ AAGATGAGATGGCGCAGCTTGAGGATGAATAT 238336 28 100.0 33 ............................ ATAATGAATTTGACAGTAACGGGGATGTCATCT 238397 28 100.0 32 ............................ ATGAGATGATCACAAATCAGCTCACAGGCGCA 238457 28 100.0 32 ............................ AAATTGTGTCTTTGTTATTGATGGTGGGCGAC 238517 26 92.9 0 ..........................-- | ========== ====== ====== ====== ============================ ================================= ================== 110 28 99.9 32 CTTCACGACCGCATAGGTCGCTTAGAAA # Left flank : TCGCATGGCGGCTTGGGTGATGGATGTCCCTGTGCCAAGCAAGATGACTGTGGTATTGGCGATGGGGATATTATAATAGTGGTTTTCGTATTTGGTTTCGGTGAGATACAGGATGCGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATACGTTGGCGCGCTTGGAGTGCAAAATTGCCTTAAGATCCGTGGGTTTGAGCGTATCCATGACGTCAATTTCCTTAATGATGAATTTAATTTAATCACACCCATTATAGCCTGTCAAGCGATGATGCGACCAAATTATAAGCTTATATTATCCATCTGCCATATCAGTTATGCTATACTAAATTTGACATCAGATGATGATGGGTGTAAAAAACCTTTATTTTTTTAACTATTTAAAAACTTAATAAAATCAATAAGTTATAACTAGTCAACTTTTGATTGGATAAAAAGGGTCAATCCATCATAAATGGCTGTTATTTCTTAATTTTTTCGGTTATAATTACT # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCATAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 30103-29400 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUXT01000008.1 Moraxella canis strain CCUG 8415A 8415T_ctg_0000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 30102 32 81.2 36 T...TG.T.T.........T............ GCCGGTCGCACAGCTAAATTTGTCAAAGCAATGGCT 30034 32 100.0 35 ................................ TTGATGAGTTTATCTCAAAGTCGCAAAAAACGGAT 29967 32 100.0 34 ................................ ATGCGATCAGCTGTCGATTTGTCAGCTTCAGTTA 29901 32 100.0 35 ................................ TCTTGATGATTCAAGAGCTGCTGTAACTCGCTCTC 29834 32 100.0 36 ................................ GCAAGGCTGGCACAAAACCCTATCGAACGTCGTGGT 29766 32 100.0 34 ................................ TAGCCCAAATGATTTATATGAGATAACTAAAGAC 29700 32 96.9 34 ............................T... TATCTTAAGAAAAACACAGTTTTCATTAAACGAT 29634 32 100.0 38 ................................ GCCCAAATGTCGGCATCAAAGCTAAGATTGCAACAGCA 29564 32 100.0 34 ................................ TAACTTAAGCTCAAGCTATGAAACGCTTGACGAA 29498 32 100.0 35 ................................ TAGACTAAAACGACGAGCATTGGAGCGTAAAAATG 29431 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 11 32 98.0 35 GTTTCAACACACGCTCCCGCGAAGGGAGCGAC # Left flank : ACCAAAATCAGCAAGCCGAACAAAGAGATGCTTGGAATGGTATAAATGATGTTGCTCATCTGAATGACAAACGGTGCTAGCTTCCTATTTTCGGTGATCAGCACACCAAGCCCGACCCCGATCACGATCGCAAAGCCTGCTGCAATACCACAGATCATCAAATGCTCAGCAAAAAGTCGCATAAAAAACGCAGAGCGAGTGGTCAGCAGCTGCAAGGATTCCTGAATGATAGTCACGCCATATCCTTTGATTTTTTTATAAATTTATTTAAGTGAGTATAAATACTTACCACTTCATTTTATATGACCAAGGCGCATATTACAATGTTAAGCTTTGTAAAGATTGTAATAGTGGGTAAATAAAAGATGGGTTCCATCTGCTATTAAAATACTCGGGGGTATTTTGAGATTAGAAAAATTACGCATATCACACAAAGTCATTTAGTGACTTATGGTCAATTATATTTTATTTTTTTGTATATTCCATCAAAGATATTTATG # Right flank : TTTTTACTTACGCCGTTAAAGAGCTGTTTTTAATCGTTTCAACACACGCTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCGCGAAGGGAGCGACCCAGTGAGGGTAAGCTGACATTTGCTGAGCTTTGTGTTTCAACACACGCTCCCGCGAAGGGAGCGACGCTTTGGTAACTTCATCTTTGCCCTAATCTTGACGGTTTCAACACACGCTCCCGCGAAGGGAGCGACACGGTGCGTGGTGATAGCATGATGCCCAGATTTCATGTTTCAACACACGCTCCCGCGAAGGGAGCGACGCCAGCTTTTGGTGCTTTTCGTCGCCCAAAATCCGTTTCAACACACGCTCCCGCGAAGGGAGCGACACGGTGCGTGGTGATAGCATGATGCCCAGATTTCATGTTTCAACACACGCTCCCGCGAAGGGAGCGACGCTTTGGTAACTTCATCTTTGCCCTAATCTTGACGGTTTCAACACACGCTCCCGCGAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACACGCTCCCGCGAAGGGAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA //