Array 1 152840-153052 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPAX01000001.1 Selenomonas ruminantium strain GACV-9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 152840 29 100.0 33 ............................. CGAGCCATCATATTCGCGATTTTCGTATTGAGA 152902 29 100.0 32 ............................. TGAGGAGGCAGCATATGGCAGAGAAAGCGAGA 152963 29 100.0 32 ............................. GACGGATGAACTTGCATGAGGTAGTCGCAGGT 153024 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 4 29 99.2 33 GTATGCCCCACGCATGTGGGGATGAACCG # Left flank : CTGCTACGGGGATGCTGTTTATCCCTTGCAGGGGCGGAATCAGCCACCATCCAGACGAATATGCGGAAATGAATGACATCGTAACGGCGGCAGAGCTATTGGAACAGGCATTGTGGCTTACGGCAAATGGATAAGTGGATATGCAGGAGAAGCAAAAACTGTCAATGTATATCTACAATAAGGCAACTGCGTTAGAAGAGTATCAGTTTATCAAGAATAAATACGTCGTATTATTCTTGGTATGGGATATGGAAGTTCAGCGGTGGTTGGAATCTGACTTGTCAATTTGACATGTCAGGGAGAAGGGACTGATCGGTTGATTTGATGACTGCAGAATATACGGAGACGTAAGTAGTCAAAGATAGTATGACATAGAGCGAATAGATGTAGCATAACATAATTGCTCATTGACTTTTTTGTGTAGTGTGAATATGATTGAGATAGACACATAACAAGGTGTTTTGGAGTGCGAATGACGTAATTAAGCCATTTCTGCTAGT # Right flank : TGAACACACAGAGGGCAGAAAGGCAGATTGCATAAGGGAAACAGGGCTTTCTAAGCATACTGTTTATCGTTGGTGGGACGCTTGATTTTCGTTCAGGGCTGGGCACGTGTAATGTATCAATAGAGTTCCTTTTACCTTTTAGAAAATCAAGAGGGAGCCGGTGATCCGCTTGCGCGGAACCACGACTCCCTCTTTGAGCACACAGGCTATGCTTTTTTCGTTGTAGGCTTCTTAGACTTCGTAGGAGCGGTCTTAGGAGCGGCTTTTGGGGCTTCTGCATGGATTTGGTCTAATAGGGCTTTCAACGCGCTCTCGTGGCGTTTCTCGGCTCTCTCAGCGGCTTCCTCGGCTTTAGCTGCCAGTTCGGCTCGGAGTGCTTCTCTTTCATCAGCGGCCTTTTCTCGCGCTTCCAGTAGCTCTGTTTTGTGGCGAAGCTCGGCTTCTTTGGCCTCGGCTTGCAATTTTTCTATGGTTTTCGTGGCTTTGGCGGCTTCTTCCTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATGCCCCACGCATGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155326-155598 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPAX01000001.1 Selenomonas ruminantium strain GACV-9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155326 29 100.0 32 ............................. GGTGCAATATTCGGCGCGCAACTTGTTGCGGT 155387 29 100.0 32 ............................. GCGAAACAGTCGGGGAAATTTCCGTAGGGATT 155448 29 100.0 32 ............................. TAGGAATATACTTGGTCATTCGGTTGGAAGTT 155509 29 96.6 32 ............T................ CTCTGCGCCTTGGTTGACAATTGTTTGTTGGA 155570 29 69.0 0 .......T..T.TGC..A.....T.T.T. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.1 32 GTATGCCCCACGCATGTGGGGATGAACCG # Left flank : CAATTAGCCTATTATAAAGTTGAAATTTCTTCATTGAAAAGGGAAATGCAAGACGATGAAGTTCATAGGGAAAAGTTGGTGGCTAAGTCAAATCAGGAAAAGGCAGATGCAGCTGTAATTAATGCAAAAAAAGAACAGAACAAAGAAGATAAAATTGTAATGGATAATAGTGAGCTAATACAACAAGAAAATAGTATTACAAGTGATACTATATCTTATTTGAAAACTAACTATCCTCAAAAAGAAAAAAATGATAATAGTATTGGAAGAGTTAAAGAATCGTAGCAGGAAGAAAGCTGCTATATGTATTACCTATCTACGCAGATATTCCATAGTAAAAAAATATTCAGCATAAAATATGTGGGGGAGTACATCTTCCCCACATATTTTATGCTGAATATCTAAATCAGTGTAATGAACTTATTCTTATTAGCAATTCATGGTTTCATGGCTTTTGTGAAATACTTTCCGCGCTCGTCTTGTTGACGAAGAAATTCTTC # Right flank : GGATAGCTGGATGTAATCAAAGAAGCTGAGGAGAAACGTAAGCAAAAAAATAGCCCCCCAAAAGGGGCAGAAGTCAGGAAGTGTGTAAATGCCTGTAAAAACGCAATAACAATTTTATCAAAAGCTTAAGGAGCTCAACGGCTAAAACACTTATGAAGCAAAAGACAAGCAGCCCGAAGAAAGCAAGCCCCAGGCCGAAAATAGCTAAAGCCATACTTAAGCACCTCCGTAAAAGCTAGTATATCTTTAGTATACCAGTAGAGAGAAAATTTTTGTGGCTGTAGGAAAACTTTTTGCGATATCATTTGTTTTTTATGCAGTCATAGGGGGAGGTTTTTGCCGTCATTAAAATCATTTGCGATAAAAGATGAAAACTTTAATATTATTATACGATTTGTAACGTCTGCGGATAAAGATGGATTAACTAACTCGATAATTACATTCATGAGGATAAGTGACAAGAAGGTCGGGAAGGTTATCCGAAATGACAAGTCAAGTTG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATGCCCCACGCATGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //