Array 1 1120931-1117812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQFA01000004.1 Leptolyngbya sp. KIOST-1 LS_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================== ================== 1120930 34 100.0 37 .................................. AATCAACTTTCGATACACCGGGGAATCCCATTTCTTC 1120859 34 100.0 42 .................................. AAACGATGGATTTTCGAGTGTTGCACCGCCCTGGGTACGAGG 1120783 34 100.0 37 .................................. CTTTACCCGATGGTCGCACATAAACTCGTGCAGGCCA 1120712 34 100.0 31 .................................. CCAACATTCCTCGACTGAGGCCGATTAGATT 1120647 34 100.0 41 .................................. ATGTCGAGCATTTAAATCAGGCGCTATGGTCGGAATTGCCA 1120572 34 100.0 41 .................................. AACTCGTCAAGGTCCAGGTTGGGGTTGCTGCCCAATGGTTC 1120497 34 100.0 34 .................................. GTGGGGTACTGCTGTCGGTCTTGAAAGATGCTGG 1120429 34 100.0 38 .................................. ATGCTGCGGTGCTTTGATAGGTGAATTACCAAGCGAAG 1120357 34 100.0 34 .................................. GCGTCGGATCGAGCAACATCACCTGGCCCCACCT 1120289 34 100.0 38 .................................. ATGGTGAAAAGTATGAAACTCTGAGAGACAATGTTTGT 1120217 34 100.0 38 .................................. TGCTGATAGCGTGACCTAAACCTGTAAGATCCATTAAT 1120145 34 100.0 34 .................................. AAGCGAGCGCGAAACGTCCGCCCAAAGTCACTCA 1120077 34 100.0 41 .................................. CAGGTCGTTCAGCATAGCGGTCAGATCTTCCATAGATGCCT 1120002 34 100.0 38 .................................. CACGTAAGTTTTGCCTTTTGAAGATTGATAAGTACATT 1119930 34 100.0 36 .................................. CTCGAAAGAGTCTATCTATTGTTGGTAAATGTGTAG 1119860 34 100.0 38 .................................. TCTAAGGCTGCGCGGTTTAGTCATGGCTTCAGTGAAGG 1119788 34 100.0 34 .................................. TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1119720 34 97.1 34 .......G.......................... TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1119652 34 97.1 34 .......G.......................... TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1119584 34 97.1 34 .......G.......................... TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1119516 34 97.1 34 .......G.......................... TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1119448 34 97.1 34 .......G.......................... TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1119380 34 97.1 34 .......G.......................... TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1119312 34 97.1 34 .......G.......................... TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1119244 34 97.1 34 .......G.......................... TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1119176 34 97.1 34 .......G.......................... TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1119108 34 97.1 34 .......G.......................... TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1119040 34 97.1 34 .......G.......................... TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1118972 34 97.1 34 .......G.......................... TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1118904 34 97.1 34 .......G.......................... TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1118836 34 97.1 34 .......G.......................... TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1118768 34 100.0 36 .................................. CCAATGGGACTGAACCCAGCATCAGGGATTACACTG 1118698 34 100.0 36 .................................. ATTAATTTACCTTTTAATTAATAGGACGGTTTTTGA 1118628 34 100.0 36 .................................. AACAGAACCCCCACGCCGCAGCAGTCGCCCCCGAGG 1118558 34 100.0 34 .................................. TCCTGGGCTAGGGCGCTGATGATGCCTTTCCTCG 1118490 34 97.1 35 .......G.......................... ATTAATTCGTCTTTGGTGGCATTAGTAAACGCCAA 1118421 34 97.1 38 ...C.............................. TCGAACACCTGACCTCGCTTGGGGATACCGCCCTTGGG 1118349 34 100.0 40 .................................. CAATCTCAGGAACAATGCTTGAAGGCGGCAAAAGCCCCAT 1118275 34 100.0 36 .................................. CACAGCGATGGGCGATGGATGGCAAGGCGTTCGCTC 1118205 34 100.0 36 .................................. ATAAGTAAAAACGGATGCACCCATCAATTATATTTA 1118135 34 100.0 39 .................................. GTTTCAGTTCGAGGAATGCAAACCGAAACCGTAACAGAA 1118062 33 97.1 41 .................-................ GATCCAATAGTTAGTATTAACGTGGGCAGATTCATCCCTAG 1117988 34 100.0 38 .................................. ACGCCTACGACGGCATCAAGGACGAACTAGGGGTACGA 1117916 34 100.0 37 .................................. GAGACTTGCTCCTTCAGATCCCCTAACCATTCGCTAA 1117845 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ========================================== ================== 45 34 98.9 36 CTTTCAAACCACTTCCCCGCAAGGGGACGGAAAC # Left flank : GTCTACGACATTCCCGACAATCGCCGTCGCTACCGGCTCTCTAAGCTGCTGGAGGGTCACGGGCGGCGGGTGCAGGAGAGTGTGTTTGAGTGCTTTTTGAGTCAGGCGGAGATGGAGCGGCTGTATCAGCAGATGGCGGGGCGGCTCAACCATGCGGAAGACAATGTGAGAATCTATTGGATTCCGCCGAAGGCGGTGGCGAAGACGAAGACGATCGGTAGCGCCAGGCCGGAGCCGCCGCCGTCGTCGTACATTTTTTAACCAAGGCTCGACAGCGGCCGAGCTTGTGGTTACAGTGTGGGATAACTCCACGCAGGTGGGCCGCACCTTGAAAACTACATAGTTTCGTTTACTTCCGTGGATAGCTTGGCCTGCAAGGGTTACAAGCTGTTCTTTTGATCAATTTTTGTGGTTTGTGGGGTAAGATTAGGACAAGGTTTGCCCCTCCGTGGTTTTACCCCTCTAAAACCCGCTCTGAATAATGTTTTCAGAACAGGTGA # Right flank : CTCAAGCAAGGATGAAGGCAGAAGGATGAAGGATGAAAAGGTTGTCTGTGGGTAGTCTGGTGGGTCGCTTCCCCACCCAAGCCTTTTACCGATGCCAGGTATTTTGATGACAGGTGTTCATCCTTCTGCCCCACATCGCTTCTCCTCACCCGTAGCCAATGTCCCCTTCATCCTTCTGCCTTCCTACTTCGTCCTTCCTCCAGGGCACTCTAACAGAGACCACACTGCCCAAAATCTATGCCCAGCGACCTCAAGGAAAGAACCAAAGCTTTTGCCCTGCGAATCATACGACTGTATTCCGCCCTGCCAAACACCACGGTGGCCCAGGTGCTTGGCAAACAAATCTTGCGTAGCGGCACCTCAGTGGGTGCCCACTACCGAGAAGCCCATCGCGCCAGATCATCCGCCGAGTTTATTAGCAAGCTTAATGGTGGACTGCAAGAGCTGGAAGAAACTGCCTACTGGCTAGAACTATTAGCCGAATCCGAAACGATTGAAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAACCACTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : CTTTCAAGCCACTTCCCCGCAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 1125379-1124497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQFA01000004.1 Leptolyngbya sp. KIOST-1 LS_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 1125378 35 100.0 34 ................................... AAGGACACCCGACCGTTGCTAAAATTCCCTACTC 1125309 35 100.0 34 ................................... TAGAGTCCTCGGCCGGGGCCGAGGAACGTTACCA 1125240 35 100.0 37 ................................... GTTGAGGAGCCACTGCCTCGACGGGATCAGACCCAAC 1125168 35 100.0 37 ................................... GTGATGATAACAGACCCAGAAGACATGTTGCCAATGA 1125096 35 100.0 38 ................................... ATATAGTGGATTGGGTGATATACTCCCGGTAGGTGGGT 1125023 35 100.0 36 ................................... CCGACAGATACAGCCACAGGCTTTTAGAGAAATCAT 1124952 35 100.0 34 ................................... CGCACGAATATCAGCAAGCTGACCTTCACGGCCG 1124883 35 100.0 32 ................................... CCCATGCGGTCACAAGCATCCCGTAATGCTGC 1124816 35 100.0 34 ................................... CATCACGGTTCCCGCCGGGAGCGCCTCGGAAAAG 1124747 35 100.0 37 ................................... GTTTCAGTTTGAAATCTGGACTCCTTTGCTTTTAGCT 1124675 35 100.0 37 ................................... CTAGATGGCTTCTAGCTCATGCTCATGCATAGAGAAA 1124603 35 97.1 37 ..........................A........ TAGTCAAGGGTTATGCAGCCCGGGCTCGGGGGGTCTT 1124531 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 13 35 99.8 36 GTTCAAATCTCATTACCCCGCAAGGGGACGGAAAC # Left flank : CTTGTAGGTTGGTAAGGATGACTTCGAGGTCAAGGGTGGTGTTCCATGTGAGGCATTGGGCGATCGCCCCTGCAACCTGTTGACGCAAATCGTTCATACCAAGCCAAAACCTTCTCGCGTGTGCTGGTTACAGCCCTTGGGCTGCTTAGCTCCCTCGACGTTAACCTCGACCTACGAGAAAACCCAGAGGATGTTAACTTCTCTTTACGTCTTCGCCAACCCCAATTACGGAAATTATGGAGAAATTTCTGATTTTTCTTGGCAAATCGCTATAAGGTTGAGTAGTATGGCCTCAACAACACCCCTTCCTGAGGGGGGCTGCCGAACCTCGAAAACCGCATTATCTCGTTGACCTCCTCAGATGCCTTTCCGTATAAGGGTTTCAGCCCTTTCTGAGGGTGGGTTATTGACAGCAATTCTCAAGTATTTGCCCTCTTGGTTGACCCCCTCAGATTTGGGGTGTTGAAAGCCTTGCCCTGCAAGGGTTCTAGATCGAGGGG # Right flank : CTCAAGCAAGGATGAAGGCAGAAGGAGGAAGGATGAAAGGGGTGCCTGTAAGTAACCAGATGAGGCGCTTTGCTATCAAAGCCTTTTGCTGATTCTCGATGTCTCGATTTCAGGTCTTCTGCCTTCTGCCTTCTCCCTTTCCCCCAGGCACTACAATAGCCACAGAGACACTATCCACCTCAAAGCCCATGGCCACCATTACCATCGACGTGCCGGATGAGTTGTCAGAGCAGTTGCAGCAATTGGGCGATCGCCTGCCTCAGCTCTTGCAGCAGTGCTTGCAGCAGCCCCCTTTACCTGCCAGGGTTTATCGCTATGTGCTGAGCTTTTTGGCCAGCCAGCCTACGCCAGCCGATATCGCCAACTTTAGGCCCACAGAAGACATGCAGGCTCGGTTGAAAGAGCTAGTCATGAAGGCCAAAGAGGGCGATTTGTCTGCCTCAGAAGCCGAAGAGTTAGCTGAGTATGAACGTATCGAGCATGTCATGGTGATGATTAAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATCTCATTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 1147460-1145781 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQFA01000004.1 Leptolyngbya sp. KIOST-1 LS_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 1147459 35 100.0 38 ................................... CCTCAGTCTCAACCTCGTTCTCTGCGAGCTCCTCTGAG 1147386 35 100.0 40 ................................... GCTCTGCAGTTCCTCAAAAGAGGATACTTCACCGTCGAAT 1147311 35 100.0 35 ................................... AGGTTCCGATGGTCGGGCAGTAGCCCGGACCACCT 1147241 35 100.0 34 ................................... CAGCTAATCTCATGTCGCATCATCCATGTGTCTC 1147172 35 100.0 34 ................................... TTGTTGGCGAGCTTCTTGCAGTTCTTGACGTGCT 1147103 35 100.0 34 ................................... TTCCAGGAGCGTTTGAAACTGGGCCTGACCTTTT 1147034 35 100.0 35 ................................... TAATTGGCTGACCGTTGAAGGTATACCGAATTGTG 1146964 35 100.0 34 ................................... CCGTTGGGGCAGGGGACGCTTTGGTCTTTGTCCC 1146895 35 100.0 35 ................................... CATCACAGCTGATGTGAATTCACCAACATTTGTGT 1146825 35 100.0 36 ................................... TGGTATTGAGCTCCCTGATAACGCTTATTTAAAAGC 1146754 35 100.0 39 ................................... TTCATACTGCTCGTTTCCGATAACCACTGTGTTATATTG 1146680 35 100.0 37 ................................... GAGGAGGTTACATCAAAATTTACGGGGATTTCATCTT 1146608 35 100.0 37 ................................... AGGGTCCAAACCTTATTGTAATTCCGGATATACTCCA 1146536 35 100.0 40 ................................... ATTTTCAAGCCTGTCACGTGCGCGTGGTCTGACCCGTAGG 1146461 35 100.0 34 ................................... GCAAAGCCCGAGATATTGCCGAAAGTAGACCCAG 1146392 35 100.0 34 ................................... CCCTGGGTTGGGTACCGGGTATGCCCAAGGGCAA 1146323 35 100.0 37 ................................... CCTCCTCTGCTGCAGGCCACCCACACGAATAGCACTC 1146251 35 100.0 35 ................................... ACAGAAACAAGGCCAAACACAGTAGTCGTGGTAGT 1146181 35 100.0 35 ................................... GAGCAGGAGTAGGCTCGGGAGCGTTGGTTACTGCG 1146111 35 100.0 38 ................................... GTACAACATGACGTCGTTCCAGCTCATACCTTCTGAAG 1146038 35 100.0 40 ................................... AATGTAAATTTTGCGACCACTGTGTTGTTGGTCGATGAAG 1145963 35 100.0 37 ................................... ACGCCAAACAGCAGGATGGTAGCGGCGAGGGTCGAAG 1145891 35 100.0 41 ................................... CTTGCCAAAAAAGCCAAAGTTTAGGCCAGTCTGATTGGCGC 1145815 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 24 35 100.0 37 GTTCAAATCTCATTACCCCGCAAGGGGACGGAAAC # Left flank : ACACTGGGTCACGATTCCGCCGCTGCGAGAGGCCAGCATCCGCAAGGGCAAACTCAAGAAAAAGCTTAGCTGCTGCACCCTGATCGTCATCATTGCCGATTACATGAGCCACCCTCTAACCCGCGCCATTTATAGCCTGCAAGCCTCAGGAGCGCTTAACGGAGAGGTCGTGTTGCTGAACTGCCACGGCAAAAGCGGTGTTCTCCGCGACATTTTGATGCACGTCAATCGTCAAAATATTGAGAAATGATTGGTTTCTGTTGGCAATGGCAAATTATTTGGCTAATATCGCTGTATAGCTGACTCTTTCGTTAGGGTCTGCCGAACCTTGAAAACCGCATTATTTCGTTGACCCCCGCGAATCACTTACCCTGTAAGGCTTTCAGCCTATTTCTCAGGGTGTCTGTTGACAGCAATTCGCAATAATTTCACCTTCCGTTAGACCCCCACGAAAATGGCTATCTAGAACCCTTGTCCCGTAAGGGTTCTAGAGGCCGGGG # Right flank : GGAACTAAAAAAAACGAAGAGGGAAAAACGAAAAGAGAAAACCCTCTGTCAACTTCAAGCATGTTGGCCAAACCTTTTCGTTATTCGTTCTTCCTTTTTCTCTCTTTCTCCCCTCTGGGTACTCTAGGCAAGCTGAACTACCTGTTAGAAATGCCCGTTAGCCAAAATCCTCAACCGGAAGACTTGCGGCAGCGAACGAAGACATTTGCCCTACGGATCATCAAGCTTTATGGCTCATTGCCGAAAAGCACCGAGGCTCAGATTTTGGGTAAACAGCTTCTACGGAGTGGTACCTCCGTAGGGGCACATTACCGAGAAGCTGTGCGATCGCGCTCCAAAGCTGAGTACATCAGCAAAGTAGGTGGCGGACTCCAAGAGCTAGAAGAGTCTGTGTACTGGCTAGAACTGCTTGCCGATGCTAATCTCGTAGCACCTCAGAAGTTGACTAGCTTAACAGATGAGGCCAACGAACTAATCGCTATTTTCGTCACTCTCTCCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATCTCATTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA //