Array 1 244499-246989 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCLC010000222.1 Vibrio parahaemolyticus strain Vb0568 K-12_1c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 244499 28 100.0 32 ............................ AGTATGGTGATAGCCCTGCCGCTTGGCTTGAA 244559 28 100.0 33 ............................ CATCACCAGAAAGTGACAACGAAACAGGCTCAC 244620 28 100.0 32 ............................ TTTAACGGCAAATTGTTGCTGTTTTAGGTCAT 244680 28 100.0 32 ............................ TAGTGTAGCCTTAGCATCGGCTATCTTCTTAG 244740 28 100.0 32 ............................ AATAGGGGAATGCAGCGGTTTTTTTTATTTTC 244800 28 100.0 32 ............................ AGAGAGCGCTTAAATGAAATGTCGGACATTAG 244860 28 100.0 32 ............................ AATTAAACCAATGCTTGCAGGTGTATAACGAT 244920 28 100.0 32 ............................ GCGATGTGATGCCAGCACCGATAAGTCAGTGA 244980 28 100.0 32 ............................ CCAAAATCGATCCGGTTGAGGAAAGAAAATTT 245040 28 100.0 33 ............................ CATCCAATCCGTATTTTTTGCGTAACATTTCTA 245101 28 100.0 32 ............................ AAATGCAAGGCGTAGCAGACGTTCGTACTTAG 245161 28 100.0 33 ............................ CCAAAGTAGTTTGGTCAGTGCCATCTACGTCAT 245222 28 100.0 32 ............................ GTTTTTGACTTTCATTCCGGGTGGCTCTGATA 245282 28 100.0 32 ............................ GCGTCATACAGCTCTAAAGTAACTTCCTGTTC 245342 28 100.0 32 ............................ TGCTATTTCCGGTAATCATCCTCCTGTTCCTC 245402 28 100.0 32 ............................ AAACGTTAACGGTTGCTTTTACAGTCCAGGCA 245462 28 100.0 32 ............................ TAACATATCGAGCGAAATGTCCAGATCGGTTG 245522 28 100.0 32 ............................ AATCTTCACCATAAATATGACGATGCGGAACA 245582 28 100.0 32 ............................ GTTTAAGCGCAATTCTGCGGTGCAAACTGAGC 245642 28 100.0 31 ............................ AGATGTTAGCTAATGAATGGCGTAAATATAT 245701 28 100.0 32 ............................ GGTGTTAAATCGGATGCTGGCGAACTTGAAAA 245761 28 100.0 33 ............................ AGAAACTAAATATTGAACAAATTTTTGCTCTGT 245822 28 100.0 32 ............................ TAACATTCGCCTCTTATCATGGACTTAGATCT 245882 28 100.0 32 ............................ ATGACAACGTGAGCGCTTTCAAATAGCTTTCT 245942 28 100.0 32 ............................ TCAAAAGGGTGAACCCGTTTCACTGTCACTTT 246002 28 100.0 32 ............................ TATACGGGCGGCGGTGTAAATACTGGCGTTTC 246062 28 100.0 32 ............................ TTGAAAGGTTGCTGGAACGATTTCCTCTGAAT 246122 28 100.0 32 ............................ GTTGAGGCCGTAAGTTCTCTTAATTCCTCCTT 246182 28 100.0 32 ............................ ATTGATAAAGATGGCAAAAAGCGCACTAAAAC 246242 28 100.0 32 ............................ AAAGCGAGAACGGCGGGAAAAGAAAAGGAGAA 246302 28 100.0 32 ............................ CATCATCAATGGTGGGTCTAGCTTGTCGCGTT 246362 28 100.0 32 ............................ AAGAGGGTATCAACGTAATTGATTACGGCGCT 246422 28 100.0 32 ............................ ATAGCCGAGGAAATCATAAACGGGCTAGGTTC 246482 28 100.0 32 ............................ TACCGGAGATGGACAAACTTTCCGACGCTTCC 246542 28 100.0 32 ............................ ATCAGTAAAAAGGCTCATATCCCCTCCTTTGC 246602 28 100.0 32 ............................ GTGATCAAAAGAACCGCCGCCAAGCCAATTTA 246662 28 100.0 32 ............................ AAATACACGACAAAAAAACGTATGGCTACCTG 246722 28 100.0 32 ............................ ACTTGCTCGTTCAAAATATGGAGAAATATTTG 246782 28 100.0 32 ............................ AAATCGCATAAGCGGAGTATTCCGCTCTGCCA 246842 28 100.0 32 ............................ TGTCGGATGACAAAAGAGATTTACAGCGCTGC 246902 28 100.0 32 ............................ ACCAGCATATTCGCTCAAATCTGGTATTTGCC 246962 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 42 28 100.0 32 GTTAACTGCCACACAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTTAAATCACCTGAGAGAATTGAACGCGATATGCAGAAAAAAGCTGAGCTTTGGGCGGCTGAATCTGGCAGGTCTCTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAGACCAAACAACGTTCACCCGATAAGAGCAGTAGATTCCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCAGTTTGATTGTTATGGACTGAATGCCAAACTTAATCAACAAGGCAGTCTGGGAACTGTCCCACAATTTTAACCAACAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGTTATAAAATACATAGAGTTACAATAGATAGAATTTGGCAAGGTAAAAACATGATTTTTATCCTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTATG # Right flank : AGATCACAGTTTCATCAGCGAGTAGAAGAGCAGCAATTGGAGCTGGATTAAACAAAGGTCCCTTTTAAAGAGCTCACACAAATTCACCTTCTTTAGAAGGTGGTTATATACATAATACATGAGTCTGAATTTATGGTAAGTTTAACTCGCTTAGATCTGTTACAAATAGTAAAGTGTTAATTACTCGTAATGTTGACTCGTCTGGTTTCATAGCATAAGCGCGTTTGTATGATGTTGCGGCTAAGTAGGTTTTGCCCTCAACTTCAGCGATTTTGCCAGCGATGATGTTACTGAACCAAGACTCTCGTATGTTTACAGCTTTTGCTAATAGAGTCTTAGTGTTGCTCAAGTCATCTCTATCGAAGGAACAGACCGCAAGAGCTTCGTAATATATAGGAGCATGGAGCTCATCTCTTATACTCAACAAACTATCATACATCTCCTTTAGCTCGTTGTCTGGAATTGCGAACGGCTGGATTGAGTTAAGAATTTTAGCGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //