Array 1 411032-411426 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001972.1 Dickeya oryzae strain CSL RW192 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 411032 29 100.0 32 ............................. AAAAATACGCTGGTTAACGCAATTATTCGATT 411093 29 100.0 32 ............................. CAACACCGGCGACCGCTCAGCTGCAAGCAACA 411154 29 100.0 32 ............................. TATGGGATTTAACTGCTAATGAGTCTTATGGA 411215 29 100.0 32 ............................. CAAATCTGACAGCGAACTTTGCTGATAAGAGA 411276 29 100.0 32 ............................. CAAAAGGCCACATCATGATGACACCTGAAACC 411337 29 100.0 32 ............................. TAACCGGCTGGCGCGTGATATCGAGCCTGAGG 411398 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCTGCTGGCGAGATTGAGCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGACACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACAGAAAACGTGCCGCCACGCCTGCGTGGTCGGCTGGCGGTTTGGCTGCTGGAGGTGCGTGCTGGCGTCTATGTGGGTGATACCTCGCGTAGGGTACGGGAAATGATCTGGCAGCAGGTGGTGGAACTGGCCGAACAGGGCAATGTAGTGATGGCCTGGGCCACCAACACCGAGTCCGGTTTTGAGTTCCAGACCTTCGGCGAAAACCGGCGGATGCCGGTGGACCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCCGTTGAAAATCAGTGAGTTAGTGCTCTTTAACAACCGGGAAAAATCGGTAGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATAATTTTAGA # Right flank : CTTCGTACGCCTTGAGTATTTCATCGAGTCTGCGTGTTCCCCGCGCCAGCGGGGGATAAACCGCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAACCGGAGAGAGTGCTTTCCGCTGTCTGAGGGGTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAATAACATCGAGCATACTTCTGGCTCGGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCAGCGATATCAAGTAGCGCCGCCAGGCTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGACGTGAATGATTACGTTGTTGGGTGGTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCGCAGGTTGATCCTCATGGCAGTTCGCCCGCGCCAGCGGGGATAAACCGTCCACCTATGCGCGCCTATGCGCCTACGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 411633-412140 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001972.1 Dickeya oryzae strain CSL RW192 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 411633 29 100.0 32 ............................. GGAATAACATCGAGCATACTTCTGGCTCGGCT 411694 29 100.0 32 ............................. TTCAGCGATATCAAGTAGCGCCGCCAGGCTTG 411755 29 100.0 32 ............................. GGACGTGAATGATTACGTTGTTGGGTGGTTTG 411816 29 100.0 22 ............................. GGGCGCAGGTTGATCCTCATGG Deletion [411867] 411867 29 93.1 32 CA........................... TCCACCTATGCGCGCCTATGCGCCTACGAATG G [411873] 411929 29 100.0 32 ............................. GGTGATGCCCGCCCGGTGTTGATGGACGAAGC 411990 29 100.0 32 ............................. AGCCGAGGGTTTCCTTACCGACCGCAATTAAA 412051 29 100.0 32 ............................. TGGTCACGTTCAGGTTGGTGAGAATTGATGCT 412112 29 89.7 0 .........................GG.A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCGCTCAGCTGCAAGCAACAGTGTTCCCCGCGCCAGCGGGGATAAACCGTATGGGATTTAACTGCTAATGAGTCTTATGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAATCTGACAGCGAACTTTGCTGATAAGAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAGGCCACATCATGATGACACCTGAAACCGTGTTCCCCGCGCCAGCGGGGATAAACCGTAACCGGCTGGCGCGTGATATCGAGCCTGAGGGTGTTCCCCGCGCCAGCGGGGATAAACCCTTCGTACGCCTTGAGTATTTCATCGAGTCTGCGTGTTCCCCGCGCCAGCGGGGGATAAACCGCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAACCGGAGAGAGTGCTTTCCGCTGTCTGAGGGGTGAT # Right flank : AGAAATAAATCGGGCACGCGGTGTGATTACGCGTGCCCGATGTTGGACCGTCAGACAGGGTTAAAACGACTGCCAGTCGTCTGCGCTGGCTGATGTTTTGGCGGCGGGTTTTTTGAGCGCCAGTGTTTTCGCTGCCGGTGCCGATGAAGGGGAAATCATCGGTCGGTTGCCCGCCAGATTGTAAGACCCGCCTCTTGCCTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGCTCAGCCTGCTGTTGCAGGGATTGCGTGGCGTTGTAGCCTTCTCTGACCAGCGAAGCATTTTGCAGCGTGGTTTGTTCCATTTTATTAATCGCCTGGTTGACCTGCTCGATACCCAGTGACTGCTCCTGACTGGCGACGCTGATTTCGCCGACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGCCGGTTCCCGGCGTCCACAGTTTCTACCGAATGACCGATCAGTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 700436-701014 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001972.1 Dickeya oryzae strain CSL RW192 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 700436 29 100.0 32 ............................. ATGAGCATATTTGGTATTTCACTGACGCTGGA 700497 29 100.0 32 ............................. AGCTGGCGACGTGGTTATCCAGTCATCCGCAG 700558 29 100.0 33 ............................. GATTATTTCAGTTGATGCCGGGAACGGCGCGTG 700620 29 100.0 32 ............................. CATCATTGGGATATATTGATTATTTGCCGTCC 700681 29 100.0 32 ............................. CATATAACCAAGCCACAAACGCCAATGCTGAA 700742 29 100.0 32 ............................. TTGCGTCAATGGATCGCTTGACTGATGTAGTC 700803 29 100.0 32 ............................. CGCTCGATGCCGCGTGTCACGCGAATCGAACT 700864 29 100.0 32 ............................. TTTTAACCGCACTAAAAGACGGCGACATCCCG 700925 29 100.0 32 ............................. CGCTCGATGCTGTTATGGACTGGTTTAGTGAA 700986 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAAAGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGTACCAGCCTTTCTTTTTGCAGTTTGGTCAGTTGCTTGATGCGGTATTCCCATTTCAGCGCCGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCTTTTCCGCGCAGTGATCGCGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGTCGACATCGGTAGTAATGCCGGTATAAAGCCACCCGCTGCCAGTACGCAGCAGATAGACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACGGCATTCATCGGTGGACGTGGGTGAGGGAAATTGCGACCTTTATTTATCAATGAGTTAGCGCTCTTTAACAACGTGAAAAAGTTGGTGGAATTTTTCAGGCTTTAAAAGTCATTAGAAAACAAGTATATACTTTTAGA # Right flank : GCAACACTGGCGACTACTCAGCAGCAAGCAACAGTGTTCCCCGCGCCAGCGGGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCGCCCTTGAACACGGCTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTTTATCTCTGGTTACAACGCGGCAAGCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTCATCGGCGTGGTTTCCTGCACTAGGCCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGGTGCAATTAAACATCACTCAGATTGTTCCGTGTTCCCCGCGCCAGCGGGGATAAACCGACATCGAAAAACCCCTGGGTACGGTCGTTGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGATGGAAGACTATCAGGGCGGCGGAATGCCCGGGTGTTCCCCGCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 701194-701772 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001972.1 Dickeya oryzae strain CSL RW192 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 701194 29 100.0 32 ............................. GTTTTATCTCTGGTTACAACGCGGCAAGCGAC 701255 29 100.0 32 ............................. TTTCATCGGCGTGGTTTCCTGCACTAGGCCCT 701316 29 100.0 33 ............................. CGGGGTGCAATTAAACATCACTCAGATTGTTCC 701378 29 100.0 32 ............................. ACATCGAAAAACCCCTGGGTACGGTCGTTGCA 701439 29 100.0 32 ............................. ATGGAAGACTATCAGGGCGGCGGAATGCCCGG 701500 29 100.0 32 ............................. CACAGATGCTACAGGCGATTGAGTACATCCAT 701561 29 100.0 32 ............................. TACGGCGTCACGATCCCCCGCAACGCCAAAAC 701622 29 100.0 32 ............................. TGCTCTGCTGGGTTTGGATGTATGTTCCGACA 701683 29 100.0 32 ............................. GTCGTCGTGGACGATAATTGGGTCGCTGTCGA 701744 29 89.7 0 .........................G.GT | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGCATATAACCAAGCCACAAACGCCAATGCTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCGTCAATGGATCGCTTGACTGATGTAGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCTCGATGCCGCGTGTCACGCGAATCGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTAACCGCACTAAAAGACGGCGACATCCCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCTCGATGCTGTTATGGACTGGTTTAGTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAACACTGGCGACTACTCAGCAGCAAGCAACAGTGTTCCCCGCGCCAGCGGGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCGCCCTTGAACACGGCTAAA # Right flank : TTAACGTAATAGCGCGGCACAATCCGTCGCGGTGTCTTGGACTTTATTGTGATAATATTCACATCTATCGTGGATTTTGTGTGTGTAATTTCTTTTTTATGTGAATAAAAACACAAAATGGGTTGTCATCTCCGGGTGAAATAGCGGTATTCGCCGGGGATATGAGCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACCACCCTGAATGACGACGACACCGATGAAAAGGTGACGGCACTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCTGCTATCTGTATCTACCCGCGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGCACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGTAACGACGACATTGATATCGCGCTGGCGGAAACCAATGCGGCTATCGCCTACGGTGCCGACGAGGTGGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3799043-3800151 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001972.1 Dickeya oryzae strain CSL RW192 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3799043 28 96.4 32 ...........C................ AACGCCCACAGGAACGCGAATTGCGTCACGAC 3799103 28 96.4 32 ...........C................ TGAGAGCCAGCGGCTGCAACCGATGGCTTTTT 3799163 28 96.4 32 ...........C................ AGCAACACCGGCAAATACTCCGCCGCCAGCAA 3799223 28 96.4 31 ...........C................ CGCGCAAGCGGGCTTTTTGCTTCACAACACA 3799282 28 100.0 32 ............................ CAATCGGGAGGAATACTATGCAAGAGCAAAAT 3799342 28 100.0 32 ............................ GAACATGTACATGGTATTATCGACATGCAACT 3799402 28 100.0 32 ............................ TGGCACATGCGCTTTGAGCTTGTCGAAAATCG 3799462 28 100.0 32 ............................ AGCTCGATGATCATCACGCGCGAAAACAACGC 3799522 28 100.0 32 ............................ ACAATAGCGATGCTTTTGTCGCCGGCAGTTGT 3799582 28 100.0 32 ............................ GCTTGCTCGTCAACAAGGTCATTGTCACTCGC 3799642 28 100.0 32 ............................ TGAATGTCCAATTAGTGTTTTTGGATGCGATA 3799702 28 100.0 32 ............................ TGCGCAGCCGCCTGCAATTCCGGTACCGTCCA 3799762 28 100.0 32 ............................ CTATCCTGCACCTCATGAGGGTCGCCTTTGAC 3799822 28 100.0 32 ............................ GTGCTGGAGAAATACATGCGCCATCTGGGCAT 3799882 28 100.0 32 ............................ TGCTGGTACAAACCCCATTTGATCACAAGCAG 3799942 28 100.0 32 ............................ GGCAGGCTGGTGATATCACTACCAATCATCCC 3800002 28 100.0 32 ............................ CATGCACCTGGGGTGCTCCGTGGGGTTCCGAC 3800062 28 100.0 32 ............................ GCATTGTTGGATTCATATTAACCAAATCTATT 3800122 28 82.1 0 .............C.........G.TGG | GG [3800143] ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.3 32 GTGAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATGATATTGACACCACCAAGTCTGGTGAACTGCCGCATAGGCAGCTTAGAAAATTCTCATCGCGCAAGTGGACATTAAGAGTCTGTGAACTGCCGCATAGGCAGCTTAGAAATACCATTTCCACCATCTGTGAATACTTACTGGGTGAACTGCCGCATAGGCAGCTTAGAAATCTATCTGCTGACGACGTGCCAGCATGTGGGCGTGAACTGCCGCATAGGCAGCTTAGAAAAATTACGCCTCGCTGGCGTTTTATTCGGCGACGTGAACTGCCGCATAGGCAGCTTAGAAAGTAAGGTCGGCGACAATGGAATCAAGCCTAATGTGAACTGCCGCATAGGCAGCTTAGAAAGGACAACATACCGCAAAACGCTTCAAACGTTTGTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCGCTATAC # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAGGCGACACGGTCTATCGCGCACGAAACCACCCACCGCCCCCGCATACATTCGACAAACACATTCGCCAGCAGCACCCCGGCTGTTTACCAACAGCCCAAAAACGTTACTCCACCGTCAACACCGCTACCGCCTTTTTACGCTGTTTGATGGCATAACCTGCCCCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGAATGTTGGTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 3806566-3805217 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001972.1 Dickeya oryzae strain CSL RW192 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================== ================== 3806565 28 100.0 32 ............................ AATTGAGGTTTTACCCGAATATGTGCCTTATC 3806505 28 100.0 32 ............................ ATGCATTGCGTGTGAGCCCCAGAAATTCGGCC 3806445 28 100.0 32 ............................ CAAAGCGTGGCAGCAGCCATAGGACTTAAGTC 3806385 28 100.0 32 ............................ GAACAAAGGCCCGCTGGCTGGCAGGCACCTAA 3806325 28 100.0 32 ............................ GCCAGCAAACCCAACGACGACCAGCCCGTTAT 3806265 28 100.0 32 ............................ AGCGAACAAACCAACAAGCAATGCTCTGACTT 3806205 28 100.0 32 ............................ TGGCTGGATGAGGTCAGCGCGGTAAGCGGCAT 3806145 28 100.0 32 ............................ TACCTCGCCCCAAACTTTCGAAACCCGGACAT 3806085 28 100.0 32 ............................ AGCGGGCGGGGCGATATCGCCATCTGACCGGT 3806025 28 100.0 32 ............................ CATTAGCTCAGGAGCTAGCGAGAATGAAAAGT 3805965 28 100.0 32 ............................ CGACGGTCCTAGTTACAATGTGCTGGCGCTGG 3805905 28 89.3 91 .........................NNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 3805786 28 75.0 33 NNNNNN.......T.............. ACATACCAATACAGGCAGACTGGCTTTTATGGT 3805725 28 96.4 32 .............T.............. TGGAGCGCGTCGCTGATGGGCGAATCACGCTC 3805665 28 89.3 32 ...........TGT.............. GATTGTTAATCGGTCCACGTAAATTCGTGTGT 3805605 28 100.0 32 ............................ AGCCACCCCGGCGAACGGGAGCGACAAGCAGC 3805545 28 89.3 32 ...........AGT.............. ATGATGAATGGCATCATTCAGAAGGAAAATGG 3805485 28 92.9 32 .........T...T.............. GCTAGTTGCAATTACGACCGCTTGTACATTTT 3805425 28 96.4 32 .............T.............. ACCGGAAATTAGTTCAATTTCGATCGCGTCCA 3805365 28 89.3 32 ...........AGT.............. AGGACGCGGAATAACATTCACTCGACAGGCCG 3805305 28 100.0 32 ............................ ATGAGCGGGTTGTGGTTTCTGAGCATGAGCGC 3805245 27 85.7 0 ...........T...........-..CG | GG [3805222] ========== ====== ====== ====== ============================ =========================================================================================== ================== 22 28 95.6 35 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGATGTATTAACGGTGCCAACTGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAACGCTGAGCGCCTGCGCCGCCGGGCGGTGAGCAAAGGCCGAATGACTGCGGATGAAGCCGCCGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATTTGCCGCTGCGTAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCTGCAGGACAAACCGGTCGCCGGTACCTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTCCCGGTAAAACGGCTATTTTTCTTTAACAATTAGGCGATAAGTGATTATTCGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAGGTGACACGGTTTATCCCGCACGAAACCACCCACCGCCCCCACATACATTCGACAAACACATTCGCCAGCAGCACCTCGGCTGTTGCCAACAGCCCATCCCCGGCGGGCATAGCCGTTTCCTGCAAGGAAAAAAATCCCCCAACCGTTACCAGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGCAGCGACGCGCTGTACGTTATGATGGTTTAACCCGGCGATGCAAACACGGCCGCTGGCGAT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 7 3815590-3816157 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001972.1 Dickeya oryzae strain CSL RW192 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3815590 28 100.0 32 ............................ TCTCCCCCGTATGAAAAAAAACCAGACTGGAA 3815650 28 100.0 32 ............................ ACATTGCAGCCGGATTCAAAGGCCTATTGCCT 3815710 28 100.0 32 ............................ TGATTAATCGAATAGAGCCAATATTAGCTCAA 3815770 28 100.0 32 ............................ TGGGTAAAGCTGACAGAGCAGGCAGAACGCAC 3815830 28 100.0 32 ............................ TGAGTTCACAAGATGCACCGAAGCCCTCAACA 3815890 28 100.0 32 ............................ CTACCCCGTCGCTCGTATCCCACGAAACATTG 3815950 28 100.0 32 ............................ AATAACCAGTTGATCCTGTGTCGGGGCGGTGT 3816010 28 100.0 33 ............................ AACATCCACAGCCTTTGTTGGCAACGGCTTCAA 3816071 28 89.3 31 ..........AAG............... CCGACAACAAAACCGGCTTTGCTTACCCGGC 3816130 28 92.9 0 ...........AG............... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GTGACCGAAGTACCGGTGCCAAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAACGACTGATTCCCTTCTTCGGTGACATATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGACTGAATACGTTATCCATAAAACCGTTTCTCTGTGGTAGTGATAAAACAACCCCATCCGCGTAATAAAACGCAGACTAATAATTCATTGAAAAACACGTAATACACTGGAAAGTAACGAGAATCAGCCTAGCACAACCCAAACCAGAAAATGAATGACGCCAGAAACACTTTTCCCGCTTTAATACCCTTTTTTTCAGCCGTCTTTTTCAGTATTGAAAAATCAATAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACAGGCTACA # Right flank : AAAAGTTCGTGGCGAAGATTTGGCAAGTTGTACGTTCACTGCCGCACAGGTAGCGGTTGACGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACAGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTTCACGCTTTCAGGCACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTCACTCTACCGATAATCCTCACTATCTAACGCCCGGATCTAACGCCCGGGAAAGGGCAACCTGTCAAAACGACGCCCAATCACTATTGCTACCCGCCGCCGCCGTGGCCCGCTTTTCCGGCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 8 4688813-4689695 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001972.1 Dickeya oryzae strain CSL RW192 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4688813 29 100.0 32 ............................. TGACGACCAGAAATTGCCTTTTCCATCAGGGC 4688874 29 100.0 32 ............................. AAACGTCAGAGCTAGAGCGGCTCAAGAGAAAA 4688935 29 100.0 32 ............................. TAAGCACCCCAATAGCACCCCGCATTATTCAT 4688996 29 100.0 32 ............................. GGGCGAATGCAACGTGAGTTGAAATGCGGGAG 4689057 29 100.0 32 ............................. GTTATCACGTAGGCCTTCACGGAGGGTGTATC 4689118 29 100.0 32 ............................. GATTTACCGCATCAGCGATTCGGTTTGGCCCG 4689179 29 100.0 32 ............................. TTATCTCAAACAAGCCTGACGGCTCACCAACC 4689240 29 100.0 32 ............................. TTTACTGAAATTGGTCGTCACGCATGGGAAGT 4689301 29 100.0 32 ............................. GCTTATATCATGCAGCATCTGAACATCACCAT 4689362 29 100.0 32 ............................. CAATTCTGCTGAATGGAAACGTGCGGCTGGAT 4689423 29 100.0 32 ............................. CGGGTTGACGTGGATGCATCGCGCCCAATACT 4689484 29 100.0 32 ............................. CTGGGCTGTGTGCACGAACCCCCCGTTCAGCC 4689545 29 100.0 32 ............................. CACACGTGATGAACGACTTGCCGATACCACGG 4689606 29 100.0 32 ............................. AACATTCCTCACTTCTGGCGTGACCTTGAAAT 4689667 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCAGAATGGGGACATAAATCCAATGGCTGCTGTTGGTATGTATTTCCTGATGGTAGCAATATGTATGCGTATTTTGATGCTCCACTGATTAAAGAGCATCATAGGATATATAACGTAATGCCTTTTATTTCATACGAGGTCTTGAGCTAACTTGTCTTTTTAACTCTTCAATCTTTATCTGTGCTTCTTCCAATGAGTTGCAAACAGTAATAACTCGTTGATTAACGGTATCGAAAATCAGGTGCATTTCTAATTCAATAGTAGCCTCTTCATTGCCATCAAATCTATATGATAGATTGGTTTTATGCGGGGCAATGACATATCTTTCATCCACAATTTGGCCTCATACTATGTGTTATTTAGACGATGACGGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCAAGACCGTCCCATGCCG # Right flank : GTCGCGAGCAATTGCAGCGCCAGTTGTTTACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTAATTTGACAACCGCTTTAAAAATAACCGGATAGCGCCCAGCTTAAGCATACTCAGGTAGTTTCTGGCTGTTTTTTCCGAGCGGGTTGCAATTCGGCGATGTTCCTTCAGCCGGGCAAAACAGCGTTCAACGACATTACGTTTTTTGTACTTCTGGATATCAAGTTTTCGACGCCTATCCCGGCTGGCTTTTTCATTCGACTTGAATGGAATTACAGCTTTTATTCCTTTTATTTTCAAATAATAACGTAGTGAATGGCTTGAGTACCCTTTATCAGCCAGCACCGCGCCCGGACGCGATTTCAGGTGCCCGCTTTTTCTGATAATCCCAATCCGGTTAAGCAAGGTTTCCGCATATCGGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 4690888-4691515 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001972.1 Dickeya oryzae strain CSL RW192 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4690888 28 100.0 32 ............................ TAACTCGGTGTGAACAACGGTAGGCTCGTAAT 4690948 28 100.0 32 ............................ CAACCAACTCGCCGCAGTCGAAATAAGCCAAA 4691008 28 100.0 32 ............................ ATCAAACCGTCGGGGATCGGCGTGCGCTCAAT 4691068 28 100.0 32 ............................ TAATGGCTACGATGATTTGTTGGCATTTGGCC 4691128 28 100.0 32 ............................ TTGACGATGATAACAAAGCACAGCCTGCATAT 4691188 28 100.0 32 ............................ ATCTTCGTCCGCTTTGAGTCCACGTCCCAGCC 4691248 28 100.0 32 ............................ ATCACTCAACAGCGCAAAGACGATATCCGCAG 4691308 28 100.0 32 ............................ ACAAAAGAGTACCGGCTGAACAGCGTTGACCC 4691368 28 100.0 32 ............................ CCTGACTGGCCGTGCTCCGGGCGGCATTCTCT 4691428 28 100.0 32 ............................ CTATCGACGCCGCCGAAAAAGCTCAGGCTAAT 4691488 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCAGTCAAGGAGTTCCTTTTCATCCAATATCTGAAGTAATTTATTGAAAATACAGTTTATTACCCCAGATTTAGACCATCGATTAAACCGGTTGTAAATCGTTTTCCAGTTACCATAGCGCTCAGGCAGATCCCGCCAGGGAGCACCTGAACACAGCACCCAGAAAATACCATTCATCACCTGCCGGTGCTCAAGATAGGGGCGGCCAGCTCTGGAAGCTTCTCGTTCAGGCGGTAGCAGAGGATAAACCAGCGTCCATGCATCATCGGGGAAATCGTAACGGGCCACGCAAAAGCCTTCTTCCGGTCCAATATATGCTGGATTGTACAAAAAATAATTACGGGACACAGCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGCAGCTTAGAAAAACTTCTTCATAAGATATTCGATCATTTCCG # Right flank : AGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAAATATCCTCCGGCATAGCCGGAGGTTTTTCATATGCGCCTATAAGGCTCTGTTACCAGCCGCGCCCTAACAGGCGCATCGCAATCTGACATTTGCATCCAAATCCGTTACTTACGGCCCGTAAACGGGCTACCTGGATACGGGATTGATAACTGCTCGCCCAGTTTATCCTGCTCCAGTTGGTGCTTTATGTAGTCCCGGATCTTCGATGTATTTTTACCCACCGTATCTACATAATACCCTCGGCACCAAAACTCCCTGTTCCTATATTTGAATTTCAGATCACCAAATTGTTCATAGAGCATCAGGCTACTTTTGCCTTTCAGATACCCCATGAAGCTCGATACACTCATCTTCGGCGGGATCTCCACAAGCATATGTATGTGATCAGCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //